Wall clock time and date at job start Wed Apr 1 2020 02:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39832 * 126.45790 * 2 1 4 4 C 1.35452 * 107.86748 * 180.26111 * 3 2 1 5 5 N 1.35539 * 108.86953 * 359.73320 * 4 3 2 6 6 C 1.46499 * 125.67843 * 179.97438 * 5 4 3 7 7 C 1.37654 * 108.64261 * 0.02562 * 5 4 3 8 8 C 1.46678 * 126.22963 * 179.97438 * 7 5 4 9 9 O 1.21695 * 119.99564 * 94.36669 * 8 7 5 10 10 N 1.34772 * 119.99986 * 274.36150 * 8 7 5 11 11 C 1.48979 * 125.82106 * 185.46562 * 10 8 7 12 12 C 1.52201 * 105.53850 * 186.85595 * 11 10 8 13 13 H 1.08999 * 110.78910 * 85.93839 * 12 11 10 14 14 C 1.56494 * 99.88265 * 329.27798 * 12 11 10 15 15 H 1.08999 * 100.31632 * 299.30149 * 14 12 11 16 16 C 1.47762 * 102.66056 * 44.60349 * 14 12 11 17 17 C 1.48806 * 108.24278 * 190.30689 * 14 12 11 18 18 H 1.09001 * 113.94002 * 208.28300 * 17 14 12 19 19 C 1.56563 * 103.72997 * 83.43994 * 17 14 12 20 20 C 1.53990 * 105.99778 * 324.34651 * 19 17 14 21 21 C 1.52312 * 119.92335 * 216.90195 * 12 11 10 22 22 H 1.09005 * 112.63364 * 315.98089 * 21 12 11 23 23 C 1.56084 * 103.54278 * 192.94410 * 21 12 11 24 24 N 1.48789 * 104.92338 * 319.96636 * 23 21 12 25 25 C 1.36937 * 122.71106 * 147.59547 * 24 23 21 26 26 H 1.08004 * 119.99968 * 326.78837 * 25 24 23 27 27 C 1.38815 * 120.00032 * 147.06309 * 25 24 23 28 28 N 1.31611 * 120.00061 * 160.92549 * 27 25 24 29 29 Si 1.86798 * 119.99773 * 340.91975 * 27 25 24 30 30 H 1.48498 * 109.47155 * 95.53921 * 29 27 25 31 31 H 1.48502 * 109.47136 * 215.53820 * 29 27 25 32 32 H 1.48503 * 109.47339 * 335.53815 * 29 27 25 33 33 H 1.08998 * 109.47503 * 270.18380 * 1 2 3 34 34 H 1.08998 * 109.47097 * 30.19335 * 1 2 3 35 35 H 1.09000 * 109.46908 * 150.18751 * 1 2 3 36 36 H 1.08004 * 126.06859 * 359.97438 * 3 2 1 37 37 H 1.07994 * 125.57048 * 179.71531 * 4 3 2 38 38 H 1.08997 * 109.47336 * 274.65749 * 6 5 4 39 39 H 1.08998 * 109.47246 * 34.66051 * 6 5 4 40 40 H 1.08997 * 109.46781 * 154.65686 * 6 5 4 41 41 H 1.09001 * 110.23302 * 67.83800 * 11 10 8 42 42 H 1.08994 * 110.23086 * 305.87485 * 11 10 8 43 43 H 1.08999 * 111.07210 * 200.37196 * 16 14 12 44 44 H 1.09002 * 110.01906 * 77.36110 * 16 14 12 45 45 H 1.08991 * 110.14136 * 83.46872 * 19 17 14 46 46 H 1.09007 * 110.13944 * 205.22783 * 19 17 14 47 47 H 1.08998 * 109.47127 * 84.66596 * 20 19 17 48 48 H 1.09007 * 109.47219 * 204.66508 * 20 19 17 49 49 H 1.09002 * 110.45433 * 201.08571 * 23 21 12 50 50 H 1.08999 * 110.30430 * 78.77058 * 23 21 12 51 51 H 0.97001 * 120.00121 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6217 0.6928 -0.0059 5 7 3.6284 -0.6625 -0.0036 6 6 4.8225 -1.5111 -0.0088 7 6 2.3262 -1.1089 0.0033 8 6 1.8899 -2.5093 0.0072 9 8 1.6374 -3.0649 1.0600 10 7 1.7685 -3.1805 -1.1552 11 6 1.2299 -4.5605 -1.3129 12 6 1.4618 -4.9243 -2.7725 13 1 2.4613 -5.3350 -2.9147 14 6 1.3507 -3.5057 -3.4238 15 1 0.3295 -3.2434 -3.1473 16 6 2.1518 -2.6659 -2.5094 17 6 1.3012 -3.6742 -4.9015 18 1 1.7014 -2.8260 -5.4570 19 6 -0.2071 -3.9786 -5.1905 20 6 -0.7049 -4.8224 -4.0025 21 6 0.4267 -5.7522 -3.5229 22 1 0.0569 -6.5933 -2.9364 23 6 1.1750 -6.1811 -4.8238 24 7 1.9532 -4.9804 -5.2318 25 6 3.1652 -5.0636 -5.8636 26 1 3.8385 -5.8767 -5.6354 27 6 3.5309 -4.0998 -6.7933 28 7 4.7967 -3.9476 -7.1202 29 14 2.2265 -3.0189 -7.5804 30 1 2.1292 -1.7382 -6.8352 31 1 2.5975 -2.7435 -8.9917 32 1 0.9158 -3.7158 -7.5401 33 1 -0.3634 0.0033 1.0276 34 1 -0.3633 0.8882 -0.5168 35 1 -0.3633 -0.8917 -0.5109 36 1 2.0136 2.1549 -0.0004 37 1 4.4972 1.3252 -0.0117 38 1 5.1613 -1.6554 -1.0347 39 1 5.6116 -1.0316 0.5704 40 1 4.5831 -2.4779 0.4340 41 1 0.1641 -4.5776 -1.0849 42 1 1.7663 -5.2512 -0.6624 43 1 1.8894 -1.6131 -2.6131 44 1 3.2146 -2.8195 -2.6964 45 1 -0.7723 -3.0489 -5.2534 46 1 -0.3051 -4.5423 -6.1184 47 1 -1.0028 -4.1625 -3.1877 48 1 -1.5597 -5.4220 -4.3155 49 1 0.4614 -6.4521 -5.6020 50 1 1.8460 -7.0147 -4.6168 51 1 5.0522 -3.2744 -7.7701 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087353401.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:53 Heat of formation + Delta-G solvation = 94.754724 kcal Electronic energy + Delta-G solvation = -32393.482233 eV Core-core repulsion = 28489.200378 eV Total energy + Delta-G solvation = -3904.281855 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.58086 -41.06624 -38.67701 -36.11901 -33.74269 -33.22922 -31.39205 -31.02704 -30.65928 -29.92000 -28.34816 -27.59584 -25.53751 -25.25620 -24.22054 -21.95066 -21.73395 -20.96370 -20.66882 -20.15788 -18.56390 -17.76022 -17.38151 -16.75183 -16.59945 -15.92322 -15.52883 -15.21607 -14.82723 -14.74236 -14.40114 -13.91360 -13.58665 -13.35850 -13.32612 -13.26128 -13.19948 -12.84242 -12.80804 -12.57975 -12.14399 -12.11950 -12.02992 -12.01778 -11.82706 -11.55322 -11.53153 -11.41565 -11.09930 -11.06741 -10.65937 -10.58614 -10.26045 -10.16762 -10.01477 -9.73963 -9.30178 -9.17141 -8.58934 -8.57783 -8.55926 -8.06070 -6.95587 -6.01051 -3.40285 1.90805 2.30462 2.79755 2.93008 3.21733 3.24782 3.43770 3.45981 4.35267 4.46020 4.55135 4.64695 4.72108 4.95370 4.98825 5.05699 5.10424 5.18821 5.22783 5.29782 5.30529 5.34925 5.39282 5.42337 5.49490 5.66595 5.67389 5.69985 5.73255 5.84852 5.88426 5.94809 5.98757 6.01312 6.04951 6.13720 6.17438 6.22329 6.24239 6.34418 6.37299 6.45850 6.54892 6.62017 6.73023 6.80708 6.86827 6.90375 7.03317 7.21927 7.51542 7.83535 8.13633 8.28404 8.80304 9.63537 10.11418 11.15105 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012029 B = 0.004323 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.119658 B = 6474.952026 C = 7278.616200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.119 4.119 3 C -0.201 4.201 4 C 0.004 3.996 5 N -0.422 5.422 6 C 0.068 3.932 7 C -0.032 4.032 8 C 0.606 3.394 9 O -0.539 6.539 10 N -0.609 5.609 11 C 0.119 3.881 12 C -0.090 4.090 13 H 0.097 0.903 14 C -0.137 4.137 15 H 0.057 0.943 16 C 0.133 3.867 17 C 0.182 3.818 18 H 0.087 0.913 19 C -0.137 4.137 20 C -0.113 4.113 21 C -0.092 4.092 22 H 0.082 0.918 23 C 0.147 3.853 24 N -0.607 5.607 25 C -0.252 4.252 26 H 0.081 0.919 27 C 0.029 3.971 28 N -0.908 5.908 29 Si 0.874 3.126 30 H -0.288 1.288 31 H -0.304 1.304 32 H -0.260 1.260 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.140 0.860 37 H 0.166 0.834 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.056 0.944 46 H 0.077 0.923 47 H 0.058 0.942 48 H 0.058 0.942 49 H 0.030 0.970 50 H 0.054 0.946 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.567 5.686 11.771 14.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.127 4.127 3 C -0.225 4.225 4 C -0.129 4.129 5 N -0.096 5.096 6 C -0.074 4.074 7 C -0.145 4.145 8 C 0.393 3.607 9 O -0.415 6.415 10 N -0.343 5.343 11 C -0.002 4.002 12 C -0.109 4.109 13 H 0.115 0.885 14 C -0.158 4.158 15 H 0.076 0.924 16 C 0.012 3.988 17 C 0.076 3.924 18 H 0.104 0.896 19 C -0.175 4.175 20 C -0.150 4.150 21 C -0.111 4.111 22 H 0.100 0.900 23 C 0.023 3.977 24 N -0.332 5.332 25 C -0.380 4.380 26 H 0.099 0.901 27 C -0.170 4.170 28 N -0.550 5.550 29 Si 0.705 3.295 30 H -0.217 1.217 31 H -0.233 1.233 32 H -0.185 1.185 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.157 0.843 37 H 0.183 0.817 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.091 0.909 45 H 0.074 0.926 46 H 0.096 0.904 47 H 0.077 0.923 48 H 0.076 0.924 49 H 0.048 0.952 50 H 0.073 0.927 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.233 5.197 12.289 14.727 hybrid contribution -0.417 0.859 -0.587 1.121 sum -6.650 6.057 11.702 14.760 Atomic orbital electron populations 1.20162 0.89969 1.02020 1.01722 1.19693 0.95187 0.90935 1.06858 1.20620 0.91695 0.98308 1.11874 1.21835 0.99377 0.82413 1.09286 1.43813 1.05021 1.06326 1.54487 1.22156 0.85807 0.95329 1.04095 1.19961 0.84086 0.93231 1.17260 1.16727 0.77830 0.83687 0.82477 1.90819 1.51498 1.68620 1.30595 1.49762 1.61877 1.16015 1.06690 1.21762 0.98630 0.82135 0.97671 1.22090 1.01361 0.96892 0.90603 0.88512 1.21613 1.00681 0.95631 0.97903 0.92434 1.20791 1.00034 0.97762 0.80241 1.20927 0.91108 0.90408 0.89999 0.89573 1.23158 0.96383 0.99221 0.98759 1.22007 0.97453 0.97856 0.97721 1.22115 0.94566 0.97322 0.97138 0.89951 1.21994 0.93468 0.90085 0.92162 1.45696 1.20484 0.98472 1.68587 1.18763 0.90686 1.12540 1.16034 0.90111 1.25343 0.95713 0.98731 0.97229 1.69814 1.15028 1.35207 1.34995 0.87033 0.83954 0.80149 0.78355 1.21658 1.23283 1.18451 0.91741 0.91507 0.92475 0.84262 0.81666 0.89901 0.89409 0.89884 0.91635 0.91125 0.90523 0.90944 0.92559 0.90402 0.92350 0.92357 0.95186 0.92722 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 10.20 36.00 0.37 -0.63 16 2 C -0.12 -1.68 6.21 -104.16 -0.65 -2.32 16 3 C -0.20 -2.44 10.76 -39.98 -0.43 -2.87 16 4 C 0.00 0.04 11.38 -16.91 -0.19 -0.15 16 5 N -0.42 -5.51 3.16 -120.24 -0.38 -5.89 16 6 C 0.07 0.71 10.98 59.85 0.66 1.37 16 7 C -0.03 -0.49 5.60 -81.98 -0.46 -0.95 16 8 C 0.61 10.18 6.63 -12.86 -0.09 10.09 16 9 O -0.54 -10.54 17.47 5.19 0.09 -10.45 16 10 N -0.61 -9.61 3.41 -173.83 -0.59 -10.20 16 11 C 0.12 1.77 6.50 -3.08 -0.02 1.75 16 12 C -0.09 -1.42 2.43 -89.50 -0.22 -1.63 16 13 H 0.10 1.77 7.47 -51.93 -0.39 1.38 16 14 C -0.14 -2.31 2.69 -93.33 -0.25 -2.56 16 15 H 0.06 0.91 4.42 -51.93 -0.23 0.68 16 16 C 0.13 2.15 6.48 -4.70 -0.03 2.12 16 17 C 0.18 3.55 2.93 -66.29 -0.19 3.35 16 18 H 0.09 1.89 3.80 -51.93 -0.20 1.69 16 19 C -0.14 -2.28 4.89 -24.30 -0.12 -2.40 16 20 C -0.11 -1.58 5.30 -25.64 -0.14 -1.72 16 21 C -0.09 -1.33 3.98 -88.74 -0.35 -1.69 16 22 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 23 C 0.15 2.62 5.76 -1.12 -0.01 2.61 16 24 N -0.61 -13.04 1.84 -159.60 -0.29 -13.33 16 25 C -0.25 -6.59 10.31 -15.06 -0.16 -6.74 16 26 H 0.08 2.30 8.06 -52.48 -0.42 1.88 16 27 C 0.03 0.81 5.41 -17.43 -0.09 0.71 16 28 N -0.91 -26.75 13.97 55.49 0.78 -25.97 16 29 Si 0.87 21.07 24.60 -169.99 -4.18 16.89 16 30 H -0.29 -6.77 6.64 56.52 0.38 -6.40 16 31 H -0.30 -7.64 7.11 56.52 0.40 -7.23 16 32 H -0.26 -5.94 5.51 56.52 0.31 -5.63 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.74 7.96 -51.93 -0.41 0.32 16 36 H 0.14 1.38 8.06 -52.48 -0.42 0.95 16 37 H 0.17 1.33 8.06 -52.49 -0.42 0.91 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.95 7.69 -51.93 -0.40 0.55 16 41 H 0.07 0.93 8.12 -51.93 -0.42 0.50 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.08 1.21 7.76 -51.93 -0.40 0.81 16 44 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 45 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.08 1.41 6.34 -51.93 -0.33 1.09 16 47 H 0.06 0.78 6.58 -51.93 -0.34 0.44 16 48 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 49 H 0.03 0.53 7.36 -51.93 -0.38 0.15 16 50 H 0.05 0.97 8.13 -51.93 -0.42 0.55 16 51 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 383.54 15.07 5.78 5.78 Total: -1.00 -31.65 383.54 -9.42 -41.07 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -8.25 Total: 3.76 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -2.37 Total: -1.65 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: -0.49 Total: -55.39 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.45 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.18 Total: 16.89 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.65 -9.42 -41.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087353401.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.825 kcal (2) G-P(sol) polarization free energy of solvation -31.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds