Wall clock time and date at job start Wed Apr 1 2020 02:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39829 * 126.46009 * 2 1 4 4 C 1.35457 * 107.86701 * 179.97438 * 3 2 1 5 5 N 1.35534 * 108.86632 * 359.97438 * 4 3 2 6 6 C 1.46506 * 125.67148 * 180.26293 * 5 4 3 7 7 C 1.37650 * 108.64891 * 0.02562 * 5 4 3 8 8 C 1.46679 * 126.23461 * 180.02562 * 7 5 4 9 9 O 1.21699 * 119.99667 * 104.92804 * 8 7 5 10 10 N 1.34773 * 120.00446 * 284.93414 * 8 7 5 11 11 C 1.48147 * 127.83437 * 4.87895 * 10 8 7 12 12 C 1.54365 * 104.61905 * 219.46474 * 11 10 8 13 13 H 1.09000 * 110.91773 * 216.48207 * 12 11 10 14 14 C 1.54166 * 105.04415 * 336.37522 * 12 11 10 15 15 H 1.08996 * 110.87325 * 239.36329 * 14 12 11 16 16 C 1.48152 * 127.83748 * 184.56428 * 10 8 7 17 17 C 1.54333 * 109.03663 * 116.41214 * 14 12 11 18 18 H 1.09002 * 109.98744 * 180.39185 * 17 14 12 19 19 C 1.53078 * 109.46757 * 300.91453 * 17 14 12 20 20 C 1.52921 * 109.99813 * 59.26260 * 19 17 14 21 21 C 1.53205 * 108.99666 * 94.15929 * 12 11 10 22 22 H 1.09000 * 110.51628 * 67.89832 * 21 12 11 23 23 N 1.47652 * 108.06861 * 188.95672 * 21 12 11 24 24 C 1.36937 * 122.04066 * 238.57766 * 23 21 12 25 25 H 1.07997 * 120.00085 * 359.97438 * 24 23 21 26 26 C 1.38816 * 119.99810 * 179.97438 * 24 23 21 27 27 N 1.31613 * 119.99982 * 0.02562 * 26 24 23 28 28 Si 1.86806 * 119.99937 * 179.97438 * 26 24 23 29 29 H 1.48500 * 109.46832 * 90.00088 * 28 26 24 30 30 H 1.48496 * 109.46765 * 209.99902 * 28 26 24 31 31 H 1.48500 * 109.46951 * 330.00290 * 28 26 24 32 32 C 1.47576 * 115.91753 * 58.59940 * 23 21 12 33 33 H 1.08997 * 109.46968 * 275.87397 * 1 2 3 34 34 H 1.09004 * 109.46608 * 35.87550 * 1 2 3 35 35 H 1.08996 * 109.47219 * 155.87208 * 1 2 3 36 36 H 1.07997 * 126.06892 * 359.95859 * 3 2 1 37 37 H 1.07994 * 125.56824 * 179.97438 * 4 3 2 38 38 H 1.09000 * 109.47224 * 265.29154 * 6 5 4 39 39 H 1.08992 * 109.47481 * 25.29999 * 6 5 4 40 40 H 1.08999 * 109.46855 * 145.29924 * 6 5 4 41 41 H 1.08999 * 110.40612 * 338.24895 * 11 10 8 42 42 H 1.09001 * 110.40597 * 100.67839 * 11 10 8 43 43 H 1.09001 * 110.41699 * 259.12670 * 16 10 8 44 44 H 1.09003 * 110.41769 * 21.57747 * 16 10 8 45 45 H 1.09005 * 109.38431 * 179.42046 * 19 17 14 46 46 H 1.08995 * 109.38387 * 299.20530 * 19 17 14 47 47 H 1.09003 * 109.44028 * 240.80813 * 20 19 17 48 48 H 1.08999 * 109.44630 * 120.89967 * 20 19 17 49 49 H 0.97002 * 120.00305 * 180.02562 * 27 26 24 50 50 H 1.08994 * 109.99722 * 119.64354 * 32 23 21 51 51 H 1.09007 * 109.99506 * 240.93319 * 32 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1246 0.0000 4 6 3.6219 0.6927 0.0006 5 7 3.6283 -0.6626 0.0015 6 6 4.8226 -1.5113 0.0078 7 6 2.3262 -1.1090 0.0010 8 6 1.8897 -2.5093 0.0022 9 8 1.4486 -3.0083 1.0208 10 7 1.9772 -3.2435 -1.1247 11 6 2.5723 -2.8486 -2.4226 12 6 1.6223 -3.4435 -3.4839 13 1 2.1799 -3.7958 -4.3517 14 6 0.9119 -4.6134 -2.7743 15 1 1.1009 -5.5538 -3.2918 16 6 1.5058 -4.6307 -1.3444 17 6 -0.5991 -4.3101 -2.6932 18 1 -1.1162 -5.1255 -2.1872 19 6 -0.8170 -3.0057 -1.9222 20 6 -0.0947 -1.8558 -2.6253 21 6 0.5980 -2.3787 -3.8892 22 1 1.0842 -1.5679 -4.4316 23 7 -0.4256 -3.0260 -4.7339 24 6 -0.6828 -2.6081 -6.0123 25 1 -0.1296 -1.7808 -6.4316 26 6 -1.6547 -3.2479 -6.7694 27 7 -2.3292 -4.2559 -6.2582 28 14 -2.0061 -2.6775 -8.5131 29 1 -1.1344 -3.4170 -9.4609 30 1 -3.4301 -2.9401 -8.8422 31 1 -1.7330 -1.2219 -8.6222 32 6 -1.1548 -4.1504 -4.1161 33 1 -0.3633 0.1052 1.0222 34 1 -0.3633 0.8328 -0.6023 35 1 -0.3633 -0.9378 -0.4201 36 1 2.0138 2.1547 -0.0006 37 1 4.4973 1.3250 0.0003 38 1 5.0748 -1.7912 -1.0150 39 1 5.6548 -0.9642 0.4506 40 1 4.6265 -2.4100 0.5925 41 1 2.6074 -1.7627 -2.5099 42 1 3.5714 -3.2717 -2.5270 43 1 2.3402 -5.3297 -1.2852 44 1 0.7380 -4.8913 -0.6159 45 1 -1.8839 -2.7875 -1.8747 46 1 -0.4244 -3.1132 -0.9111 47 1 0.6503 -1.4302 -1.9529 48 1 -0.8171 -1.0869 -2.8991 49 1 -3.0081 -4.7033 -6.7873 50 1 -2.2209 -3.9267 -4.0769 51 1 -0.9865 -5.0630 -4.6880 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087353402.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:57 Heat of formation + Delta-G solvation = 60.808416 kcal Electronic energy + Delta-G solvation = -33119.768399 eV Core-core repulsion = 29214.014521 eV Total energy + Delta-G solvation = -3905.753878 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.61248 -40.56219 -38.27629 -35.67280 -33.81525 -32.99684 -31.72783 -31.11471 -29.84985 -29.62930 -28.38798 -27.25790 -25.43245 -25.11493 -24.01185 -21.96956 -21.65167 -20.84827 -20.59103 -20.15358 -18.58383 -17.57724 -17.08664 -16.63322 -16.42559 -15.81401 -15.28315 -14.89883 -14.75462 -14.63438 -14.16686 -13.89933 -13.49485 -13.31123 -13.26032 -13.07314 -12.89142 -12.66589 -12.41483 -12.24921 -12.03136 -12.01032 -11.97671 -11.84704 -11.49455 -11.38015 -11.26949 -11.19561 -10.92666 -10.82512 -10.55908 -10.42353 -10.14819 -10.01753 -9.76084 -9.61802 -9.24125 -9.18313 -8.55737 -8.54480 -8.45468 -8.04837 -6.80642 -5.62878 -2.99518 1.84922 2.36281 2.84529 2.89542 3.29635 3.40753 3.46590 3.48177 4.49827 4.50965 4.52369 4.84546 4.89047 4.92802 5.06841 5.13494 5.15379 5.31946 5.37454 5.38220 5.45442 5.52288 5.65300 5.67165 5.70199 5.75934 5.80219 5.85026 5.91355 5.98507 6.06600 6.10061 6.16111 6.20429 6.21492 6.30891 6.33672 6.41953 6.50917 6.59071 6.76850 6.84091 6.87580 6.91239 7.01847 7.05418 7.09706 7.19840 7.61642 7.66989 7.74860 7.94673 8.18259 8.35727 9.29470 9.90691 10.45134 11.42119 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016302 B = 0.003880 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.155405 B = 7213.871112 C = 7679.468557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.102 4.102 3 C -0.200 4.200 4 C 0.002 3.998 5 N -0.428 5.428 6 C 0.070 3.930 7 C -0.036 4.036 8 C 0.613 3.387 9 O -0.536 6.536 10 N -0.602 5.602 11 C 0.105 3.895 12 C -0.107 4.107 13 H 0.084 0.916 14 C -0.080 4.080 15 H 0.084 0.916 16 C 0.109 3.891 17 C -0.109 4.109 18 H 0.062 0.938 19 C -0.100 4.100 20 C -0.133 4.133 21 C 0.183 3.817 22 H 0.064 0.936 23 N -0.600 5.600 24 C -0.233 4.233 25 H 0.073 0.927 26 C -0.008 4.008 27 N -0.923 5.923 28 Si 0.907 3.093 29 H -0.291 1.291 30 H -0.292 1.292 31 H -0.283 1.283 32 C 0.204 3.796 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.140 0.860 37 H 0.165 0.835 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.082 0.918 45 H 0.050 0.950 46 H 0.047 0.953 47 H 0.059 0.941 48 H 0.053 0.947 49 H 0.250 0.750 50 H 0.050 0.950 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.878 5.034 11.887 18.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.110 4.110 3 C -0.225 4.225 4 C -0.130 4.130 5 N -0.104 5.104 6 C -0.071 4.071 7 C -0.149 4.149 8 C 0.401 3.599 9 O -0.412 6.412 10 N -0.335 5.335 11 C -0.018 4.018 12 C -0.129 4.129 13 H 0.102 0.898 14 C -0.099 4.099 15 H 0.102 0.898 16 C -0.013 4.013 17 C -0.128 4.128 18 H 0.080 0.920 19 C -0.138 4.138 20 C -0.172 4.172 21 C 0.074 3.926 22 H 0.082 0.918 23 N -0.323 5.323 24 C -0.362 4.362 25 H 0.091 0.909 26 C -0.204 4.204 27 N -0.571 5.571 28 Si 0.738 3.262 29 H -0.218 1.218 30 H -0.218 1.218 31 H -0.208 1.208 32 C 0.080 3.920 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.158 0.842 37 H 0.182 0.818 38 H 0.095 0.905 39 H 0.107 0.893 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.100 0.900 45 H 0.069 0.931 46 H 0.065 0.935 47 H 0.078 0.922 48 H 0.072 0.928 49 H 0.061 0.939 50 H 0.068 0.932 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 13.772 4.486 12.395 19.063 hybrid contribution -0.078 0.302 -1.065 1.110 sum 13.694 4.788 11.330 18.407 Atomic orbital electron populations 1.20432 0.89717 1.03254 1.01773 1.19740 0.95380 0.90732 1.05130 1.20670 0.91701 0.98498 1.11610 1.21810 0.99311 0.82372 1.09541 1.43793 1.04932 1.06248 1.55412 1.22090 0.86038 0.95438 1.03565 1.19991 0.83814 0.93298 1.17791 1.16595 0.78342 0.83123 0.81884 1.90831 1.47053 1.71526 1.31787 1.48948 1.58004 1.15273 1.11274 1.22545 0.96038 1.00821 0.82418 1.22732 0.96573 0.97317 0.96263 0.89790 1.22304 0.96150 0.98497 0.92990 0.89750 1.22574 0.98731 0.81932 0.98095 1.22055 0.93749 0.96662 1.00310 0.91964 1.21372 0.99520 0.95333 0.97560 1.22210 0.99523 0.97648 0.97805 1.20536 0.88923 0.92396 0.90730 0.91811 1.44596 1.40143 1.35980 1.11582 1.19266 1.16009 1.12342 0.88567 0.90885 1.24764 0.98918 0.98327 0.98345 1.70028 1.27080 1.24301 1.35671 0.86194 0.77247 0.77958 0.84808 1.21800 1.21819 1.20845 1.21082 0.94728 0.90607 0.85612 0.91828 0.91434 0.90962 0.84222 0.81785 0.90490 0.89349 0.90191 0.90282 0.91885 0.91630 0.89956 0.93083 0.93471 0.92241 0.92793 0.93949 0.93202 0.93396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.32 9.62 36.01 0.35 -0.98 16 2 C -0.10 -1.45 5.54 -104.16 -0.58 -2.03 16 3 C -0.20 -2.38 10.76 -39.98 -0.43 -2.81 16 4 C 0.00 0.02 11.37 -16.91 -0.19 -0.17 16 5 N -0.43 -4.86 3.16 -120.23 -0.38 -5.24 16 6 C 0.07 0.55 10.89 59.85 0.65 1.20 16 7 C -0.04 -0.52 4.92 -81.98 -0.40 -0.93 16 8 C 0.61 9.77 4.89 -12.85 -0.06 9.71 16 9 O -0.54 -10.29 17.40 5.19 0.09 -10.20 16 10 N -0.60 -8.63 1.72 -170.57 -0.29 -8.92 16 11 C 0.11 1.39 5.67 -2.42 -0.01 1.37 16 12 C -0.11 -1.72 3.33 -89.19 -0.30 -2.02 16 13 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 14 C -0.08 -1.28 3.26 -88.34 -0.29 -1.57 16 15 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 16 C 0.11 1.54 5.83 -2.16 -0.01 1.53 16 17 C -0.11 -2.02 2.75 -89.58 -0.25 -2.27 16 18 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 19 C -0.10 -1.83 4.46 -26.73 -0.12 -1.95 16 20 C -0.13 -2.40 4.15 -26.60 -0.11 -2.51 16 21 C 0.18 3.52 3.03 -67.02 -0.20 3.31 16 22 H 0.06 1.24 7.99 -51.93 -0.42 0.83 16 23 N -0.60 -14.29 2.87 -163.26 -0.47 -14.76 16 24 C -0.23 -6.21 9.99 -15.06 -0.15 -6.36 16 25 H 0.07 1.90 7.79 -52.49 -0.41 1.49 16 26 C -0.01 -0.22 5.47 -17.43 -0.10 -0.31 16 27 N -0.92 -26.35 9.76 55.49 0.54 -25.81 16 28 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 29 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 30 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 31 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 32 C 0.20 4.78 4.37 -3.15 -0.01 4.77 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 1.13 4.58 -51.93 -0.24 0.89 16 36 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 0.45 8.12 -51.93 -0.42 0.03 16 40 H 0.08 0.69 7.93 -51.93 -0.41 0.28 16 41 H 0.08 1.08 6.45 -51.93 -0.33 0.74 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.08 1.26 7.18 -51.93 -0.37 0.89 16 45 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.05 0.85 5.05 -51.93 -0.26 0.59 16 47 H 0.06 0.98 2.34 -51.93 -0.12 0.86 16 48 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 49 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 50 H 0.05 1.34 7.21 -51.93 -0.37 0.97 16 51 H 0.05 1.25 7.24 -51.93 -0.38 0.88 16 LS Contribution 373.81 15.07 5.63 5.63 Total: -1.00 -31.98 373.81 -10.06 -42.04 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -7.95 Total: 2.50 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -2.22 Total: -2.00 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: -0.60 Total: -54.73 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.09 Total: -10.20 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.98 -10.06 -42.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087353402.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.848 kcal (2) G-P(sol) polarization free energy of solvation -31.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds