Wall clock time and date at job start Wed Apr 1 2020 02:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36761 * 125.80352 * 2 1 4 4 C 1.47263 * 126.94008 * 0.02562 * 3 2 1 5 5 O 1.21628 * 120.00454 * 10.86531 * 4 3 2 6 6 N 1.34781 * 119.99755 * 190.86726 * 4 3 2 7 7 C 1.48165 * 127.83735 * 0.06488 * 6 4 3 8 8 C 1.54370 * 104.54804 * 140.37668 * 7 6 4 9 9 H 1.08998 * 110.92383 * 263.65734 * 8 7 6 10 10 C 1.54158 * 105.55038 * 23.86623 * 8 7 6 11 11 H 1.09000 * 110.87750 * 240.12819 * 10 8 7 12 12 C 1.48142 * 127.83266 * 180.10836 * 6 4 3 13 13 C 1.53025 * 109.71710 * 116.79906 * 10 8 7 14 14 H 1.09001 * 109.63954 * 180.50367 * 13 10 8 15 15 C 1.53072 * 109.16692 * 300.62172 * 13 10 8 16 16 C 1.55439 * 110.31423 * 58.69464 * 15 13 10 17 17 C 1.53207 * 109.00173 * 141.33462 * 8 7 6 18 18 H 1.08997 * 110.52199 * 67.98092 * 17 8 7 19 19 N 1.47653 * 108.07990 * 189.05660 * 17 8 7 20 20 C 1.36937 * 122.04201 * 239.16870 * 19 17 8 21 21 H 1.08001 * 119.99418 * 359.97438 * 20 19 17 22 22 C 1.38804 * 120.00145 * 179.97438 * 20 19 17 23 23 N 1.31613 * 120.00210 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99760 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47401 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47220 * 119.99953 * 24 22 20 27 27 H 1.48506 * 109.47020 * 240.00035 * 24 22 20 28 28 C 1.46388 * 116.66025 * 57.90217 * 19 17 8 29 29 C 1.46692 * 106.11701 * 180.27982 * 3 2 1 30 30 C 1.34483 * 106.32904 * 359.56569 * 29 3 2 31 31 N 1.34658 * 125.79826 * 180.02562 * 2 1 3 32 32 C 1.46499 * 124.85414 * 0.02562 * 31 2 1 33 33 H 1.09002 * 109.46542 * 89.99895 * 1 2 3 34 34 H 1.08997 * 109.46954 * 209.99955 * 1 2 3 35 35 H 1.08999 * 109.46753 * 330.00287 * 1 2 3 36 36 H 1.09002 * 110.41730 * 21.61262 * 7 6 4 37 37 H 1.09000 * 110.41674 * 259.14134 * 7 6 4 38 38 H 1.08994 * 110.40252 * 338.20060 * 12 6 4 39 39 H 1.09000 * 110.40045 * 100.50053 * 12 6 4 40 40 H 1.09003 * 109.38150 * 179.44085 * 15 13 10 41 41 H 1.09002 * 109.38197 * 299.11607 * 15 13 10 42 42 H 1.09000 * 110.58133 * 241.83844 * 16 15 13 43 43 H 1.08995 * 109.62300 * 121.11256 * 16 15 13 44 44 H 0.97005 * 120.00129 * 180.02562 * 23 22 20 45 45 H 1.09006 * 110.38036 * 241.50476 * 28 19 17 46 46 H 1.08999 * 109.91655 * 120.02127 * 28 19 17 47 47 H 1.07998 * 126.83266 * 179.73692 * 29 3 2 48 48 H 1.07997 * 125.57015 * 180.14319 * 30 29 3 49 49 H 1.09000 * 109.47211 * 89.99762 * 32 31 2 50 50 H 1.08995 * 109.47351 * 209.99423 * 32 31 2 51 51 H 1.08995 * 109.46919 * 329.99601 * 32 31 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3071 1.1092 0.0000 4 6 1.8703 2.5155 0.0005 5 8 0.7021 2.7895 0.1996 6 7 2.7650 3.4992 -0.2196 7 6 4.2174 3.3651 -0.4802 8 6 4.5160 4.4221 -1.5648 9 1 4.5072 3.9737 -2.5583 10 6 3.4029 5.4799 -1.4286 11 1 2.8287 5.5607 -2.3515 12 6 2.5194 4.9596 -0.2550 13 6 4.0153 6.8261 -1.0356 14 1 3.2263 7.5709 -0.9309 15 6 4.7568 6.6717 0.2946 16 6 5.8670 5.5908 0.1713 17 6 5.8732 5.0691 -1.2706 18 1 6.6788 4.3488 -1.4129 19 7 6.0397 6.2191 -2.1817 20 6 7.0842 6.3021 -3.0634 21 1 7.8183 5.5111 -3.1068 22 6 7.1994 7.4027 -3.9013 23 7 6.3051 8.3668 -3.8480 24 14 8.6239 7.5155 -5.1045 25 1 9.4838 6.3126 -4.9677 26 1 8.0962 7.5923 -6.4905 27 1 9.4243 8.7315 -4.8114 28 6 5.0135 7.2610 -2.1187 29 6 3.6883 0.6150 -0.0069 30 6 3.6096 -0.7275 -0.0006 31 7 2.2947 -1.0922 -0.0005 32 6 1.8094 -2.4744 -0.0016 33 1 -0.3632 0.0000 -1.0277 34 1 -0.3633 -0.8900 0.5138 35 1 -0.3633 0.8900 0.5138 36 1 4.4467 2.3656 -0.8498 37 1 4.7872 3.5771 0.4245 38 1 1.4681 5.1634 -0.4581 39 1 2.8195 5.4184 0.6871 40 1 5.2029 7.6265 0.5730 41 1 4.0526 6.3642 1.0677 42 1 5.6748 4.7643 0.8553 43 1 6.8361 6.0335 0.4011 44 1 6.3854 9.1358 -4.4339 45 1 4.5054 7.3520 -3.0788 46 1 5.4677 8.2136 -1.8460 47 1 4.5890 1.2108 -0.0127 48 1 4.4497 -1.4061 -0.0010 49 1 1.6893 -2.8165 -1.0296 50 1 2.5285 -3.1125 0.5119 51 1 0.8492 -2.5227 0.5118 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087388300.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:50 Heat of formation + Delta-G solvation = 70.743995 kcal Electronic energy + Delta-G solvation = -31543.427121 eV Core-core repulsion = 27638.104083 eV Total energy + Delta-G solvation = -3905.323039 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.50550 -40.48221 -38.35536 -35.62844 -33.35568 -32.85977 -31.69665 -31.63589 -30.03780 -29.81723 -27.81880 -26.53730 -26.42039 -25.28211 -23.89759 -21.99462 -21.60344 -20.89999 -20.73681 -19.95990 -18.43351 -17.39556 -16.95641 -16.39309 -15.86075 -15.83811 -15.65478 -15.13302 -14.81998 -14.64759 -14.11969 -14.04496 -13.70826 -13.35232 -13.30162 -13.12764 -12.88822 -12.77481 -12.51228 -12.30842 -12.24609 -12.08432 -12.02428 -11.76015 -11.61366 -11.41819 -11.12761 -11.01711 -10.83893 -10.54041 -10.47470 -10.34581 -10.09292 -9.84745 -9.59595 -9.50306 -9.25060 -9.09646 -8.71058 -8.43255 -8.41072 -8.10226 -6.80482 -5.61191 -2.99112 1.76016 2.35297 2.61894 3.37723 3.41884 3.47422 3.49629 3.70358 4.41615 4.51496 4.60843 4.73945 4.77870 4.90948 4.97439 5.05193 5.12443 5.22445 5.34257 5.39085 5.44519 5.49528 5.53846 5.61731 5.65421 5.70185 5.76041 5.83693 5.85300 5.90159 5.92645 6.10304 6.17803 6.19219 6.24333 6.29389 6.34110 6.50894 6.56891 6.60912 6.69884 6.77933 6.85398 6.95298 6.98210 7.01351 7.08009 7.10230 7.69684 7.79694 7.94925 7.98918 8.38807 8.54709 9.32151 9.93204 10.44901 11.42291 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017444 B = 0.002944 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.758168 B = 9509.358802 C =10327.154789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.099 3.901 3 C -0.227 4.227 4 C 0.609 3.391 5 O -0.563 6.563 6 N -0.611 5.611 7 C 0.083 3.917 8 C -0.108 4.108 9 H 0.076 0.924 10 C -0.077 4.077 11 H 0.075 0.925 12 C 0.103 3.897 13 C -0.110 4.110 14 H 0.064 0.936 15 C -0.104 4.104 16 C -0.135 4.135 17 C 0.182 3.818 18 H 0.066 0.934 19 N -0.599 5.599 20 C -0.234 4.234 21 H 0.074 0.926 22 C -0.009 4.009 23 N -0.922 5.922 24 Si 0.908 3.092 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 C 0.205 3.795 29 C -0.174 4.174 30 C -0.022 4.022 31 N -0.447 5.447 32 C 0.068 3.932 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.103 0.897 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.056 0.944 41 H 0.048 0.952 42 H 0.055 0.945 43 H 0.059 0.941 44 H 0.249 0.751 45 H 0.046 0.954 46 H 0.053 0.947 47 H 0.159 0.841 48 H 0.166 0.834 49 H 0.074 0.926 50 H 0.085 0.915 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.878 -18.699 9.972 22.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.018 4.018 3 C -0.236 4.236 4 C 0.401 3.599 5 O -0.444 6.444 6 N -0.343 5.343 7 C -0.040 4.040 8 C -0.130 4.130 9 H 0.095 0.905 10 C -0.096 4.096 11 H 0.093 0.907 12 C -0.019 4.019 13 C -0.130 4.130 14 H 0.083 0.917 15 C -0.141 4.141 16 C -0.174 4.174 17 C 0.073 3.927 18 H 0.084 0.916 19 N -0.322 5.322 20 C -0.363 4.363 21 H 0.092 0.908 22 C -0.205 4.205 23 N -0.570 5.570 24 Si 0.739 3.261 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 C 0.081 3.919 29 C -0.197 4.197 30 C -0.148 4.148 31 N -0.124 5.124 32 C -0.073 4.073 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.122 0.878 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.060 0.940 45 H 0.064 0.936 46 H 0.071 0.929 47 H 0.177 0.823 48 H 0.184 0.816 49 H 0.092 0.908 50 H 0.103 0.897 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.604 -18.816 9.969 22.966 hybrid contribution 0.932 0.036 -0.828 1.248 sum -7.671 -18.780 9.141 22.251 Atomic orbital electron populations 1.20581 0.87278 1.04137 1.03217 1.20255 0.93645 0.85152 1.02717 1.20056 0.93263 0.91759 1.18545 1.16907 0.83911 0.83289 0.75788 1.90691 1.17397 1.83933 1.52419 1.48695 1.09230 1.06492 1.69869 1.23311 0.80566 1.00739 0.99341 1.22703 0.97585 0.94590 0.98072 0.90527 1.22169 0.95217 0.95366 0.96893 0.90667 1.22916 1.00366 0.79279 0.99373 1.21812 0.98609 0.95163 0.97391 0.91735 1.21879 0.97017 0.98766 0.96478 1.22623 0.98757 0.97701 0.98322 1.20480 0.93168 0.89702 0.89354 0.91588 1.44329 1.26957 1.19267 1.41629 1.19334 1.01534 1.03581 1.11832 0.90783 1.24787 0.98679 0.97043 0.99955 1.70071 1.35453 1.10242 1.41263 0.86104 0.81717 0.77312 0.80974 1.20631 1.21931 1.21913 1.20910 0.86619 0.90822 0.93587 1.22583 0.96409 0.93473 1.07248 1.21747 0.85266 0.96347 1.11426 1.43538 1.06090 1.05975 1.56814 1.22069 1.01611 0.80226 1.03441 0.90740 0.92098 0.87819 0.89287 0.90238 0.90961 0.90509 0.92545 0.93326 0.92662 0.92224 0.93988 0.93575 0.92897 0.82350 0.81638 0.90751 0.89660 0.89760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.99 9.64 36.01 0.35 -0.64 16 2 C 0.10 1.21 6.89 -81.88 -0.56 0.65 16 3 C -0.23 -3.27 6.20 -103.35 -0.64 -3.91 16 4 C 0.61 10.28 7.89 -12.59 -0.10 10.18 16 5 O -0.56 -10.74 15.08 5.25 0.08 -10.66 16 6 N -0.61 -9.75 3.32 -169.72 -0.56 -10.31 16 7 C 0.08 1.19 5.30 -2.41 -0.01 1.18 16 8 C -0.11 -1.86 3.29 -89.19 -0.29 -2.15 16 9 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 10 C -0.08 -1.35 3.22 -88.49 -0.28 -1.63 16 11 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 12 C 0.10 1.64 6.37 -1.63 -0.01 1.63 16 13 C -0.11 -2.04 2.89 -90.27 -0.26 -2.30 16 14 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 15 C -0.10 -1.75 5.36 -25.40 -0.14 -1.88 16 16 C -0.13 -2.26 5.73 -25.26 -0.14 -2.41 16 17 C 0.18 3.45 3.17 -67.02 -0.21 3.23 16 18 H 0.07 1.23 7.99 -51.93 -0.42 0.81 16 19 N -0.60 -14.31 2.85 -164.21 -0.47 -14.78 16 20 C -0.23 -6.24 9.97 -15.06 -0.15 -6.39 16 21 H 0.07 1.92 7.79 -52.49 -0.41 1.51 16 22 C -0.01 -0.25 5.46 -17.44 -0.10 -0.34 16 23 N -0.92 -26.46 9.66 55.49 0.54 -25.92 16 24 Si 0.91 21.85 29.55 -169.99 -5.02 16.82 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 28 C 0.20 4.85 4.31 -3.80 -0.02 4.83 16 29 C -0.17 -2.09 9.35 -37.50 -0.35 -2.44 16 30 C -0.02 -0.22 11.34 -16.82 -0.19 -0.41 16 31 N -0.45 -4.30 3.09 -119.89 -0.37 -4.67 16 32 C 0.07 0.35 10.82 59.85 0.65 1.00 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.45 6.92 -51.93 -0.36 0.09 16 35 H 0.10 1.31 6.31 -51.93 -0.33 0.98 16 36 H 0.09 1.17 4.39 -51.93 -0.23 0.94 16 37 H 0.08 1.07 5.16 -51.93 -0.27 0.80 16 38 H 0.07 1.20 7.88 -51.93 -0.41 0.79 16 39 H 0.08 1.17 5.35 -51.93 -0.28 0.90 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.05 0.73 5.78 -51.93 -0.30 0.42 16 42 H 0.06 0.79 5.62 -51.93 -0.29 0.50 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 45 H 0.05 1.23 7.23 -51.93 -0.38 0.86 16 46 H 0.05 1.41 7.12 -51.93 -0.37 1.04 16 47 H 0.16 1.73 5.25 -52.49 -0.28 1.45 16 48 H 0.17 1.09 8.06 -52.49 -0.42 0.66 16 49 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 50 H 0.08 0.28 8.13 -51.93 -0.42 -0.14 16 51 H 0.08 0.34 6.88 -51.93 -0.36 -0.02 16 LS Contribution 373.23 15.07 5.62 5.62 Total: -1.00 -32.66 373.23 -10.26 -42.91 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -7.60 Total: 2.77 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -2.47 Total: -1.79 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: -0.86 Total: -55.68 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.08 Total: -10.66 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.66 -10.26 -42.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087388300.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.659 kcal (2) G-P(sol) polarization free energy of solvation -32.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds