Wall clock time and date at job start Wed Apr 1 2020 02:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36770 * 125.80026 * 2 1 4 4 C 1.47259 * 126.94400 * 359.97438 * 3 2 1 5 5 O 1.21626 * 120.00137 * 359.71442 * 4 3 2 6 6 N 1.34779 * 120.00190 * 179.71091 * 4 3 2 7 7 C 1.53292 * 125.08980 * 180.77489 * 6 4 3 8 8 C 1.49342 * 100.38646 * 202.85497 * 7 6 4 9 9 H 1.09004 * 105.23078 * 64.72604 * 8 7 6 10 10 C 1.57074 * 102.66833 * 317.28835 * 8 7 6 11 11 H 1.09006 * 109.07460 * 291.91069 * 10 8 7 12 12 C 1.49135 * 125.88129 * 359.97438 * 6 4 3 13 13 C 1.51966 * 104.61695 * 174.51794 * 10 8 7 14 14 H 1.09000 * 114.18515 * 207.75810 * 13 10 8 15 15 C 1.56079 * 103.10104 * 83.50540 * 13 10 8 16 16 C 1.53898 * 106.97727 * 322.24369 * 15 13 10 17 17 C 1.49094 * 130.13305 * 192.00511 * 8 7 6 18 18 H 1.09000 * 113.01305 * 330.45442 * 17 8 7 19 19 C 1.56858 * 104.05735 * 207.15757 * 17 8 7 20 20 N 1.49074 * 103.45575 * 322.98769 * 19 17 8 21 21 C 1.36939 * 122.59640 * 144.07823 * 20 19 17 22 22 H 1.07991 * 120.00504 * 199.85935 * 21 20 19 23 23 C 1.38816 * 119.99460 * 19.85917 * 21 20 19 24 24 N 1.31619 * 120.00305 * 26.06810 * 23 21 20 25 25 Si 1.86801 * 119.99692 * 206.06636 * 23 21 20 26 26 H 1.48500 * 109.46904 * 180.02562 * 25 23 21 27 27 H 1.48496 * 109.47074 * 59.99983 * 25 23 21 28 28 H 1.48501 * 109.47002 * 300.00122 * 25 23 21 29 29 C 1.46685 * 106.11392 * 179.72239 * 3 2 1 30 30 C 1.34481 * 106.33608 * 0.23675 * 29 3 2 31 31 N 1.34659 * 125.80292 * 180.12956 * 2 1 3 32 32 C 1.46499 * 124.85143 * 0.02562 * 31 2 1 33 33 H 1.09002 * 109.47231 * 90.00119 * 1 2 3 34 34 H 1.09000 * 109.47118 * 210.00275 * 1 2 3 35 35 H 1.08996 * 109.47202 * 330.00421 * 1 2 3 36 36 H 1.09000 * 112.21380 * 85.11131 * 7 6 4 37 37 H 1.08989 * 111.24547 * 320.19980 * 7 6 4 38 38 H 1.08998 * 110.29364 * 67.65227 * 12 6 4 39 39 H 1.09005 * 110.29304 * 305.52878 * 12 6 4 40 40 H 1.09005 * 109.95042 * 81.60861 * 15 13 10 41 41 H 1.09004 * 109.95240 * 202.78751 * 15 13 10 42 42 H 1.09003 * 109.53982 * 86.12110 * 16 15 13 43 43 H 1.08995 * 109.54408 * 206.37854 * 16 15 13 44 44 H 1.09000 * 110.74146 * 204.47879 * 19 17 8 45 45 H 1.09004 * 110.58962 * 81.41402 * 19 17 8 46 46 H 0.96999 * 119.99754 * 6.02015 * 24 23 21 47 47 H 1.08007 * 126.83380 * 180.22337 * 29 3 2 48 48 H 1.08006 * 125.57975 * 179.97438 * 30 29 3 49 49 H 1.09004 * 109.46825 * 270.28524 * 32 31 2 50 50 H 1.09005 * 109.47070 * 30.28106 * 32 31 2 51 51 H 1.09000 * 109.47157 * 150.29016 * 32 31 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3070 1.1093 0.0000 4 6 1.8702 2.5156 -0.0005 5 8 0.6839 2.7839 -0.0063 6 7 2.7849 3.5054 0.0054 7 6 2.4618 5.0038 0.0226 8 6 3.7256 5.5583 -0.5482 9 1 3.7685 5.1802 -1.5697 10 6 4.8322 4.7190 0.1853 11 1 4.8409 4.9871 1.2418 12 6 4.2656 3.3273 0.0134 13 6 6.1357 5.1512 -0.4655 14 1 6.9166 4.3910 -0.4491 15 6 6.5023 6.4557 0.3091 16 6 5.1848 7.2048 0.5766 17 6 4.2180 6.9644 -0.6065 18 1 3.4119 7.6966 -0.6526 19 6 5.1510 6.9894 -1.8672 20 7 5.8170 5.6561 -1.8323 21 6 6.1182 4.9520 -2.9675 22 1 6.2956 3.8882 -2.9120 23 6 6.1955 5.6058 -4.1896 24 7 6.4926 6.8873 -4.2329 25 14 5.8778 4.6667 -5.7729 26 1 6.0217 5.5855 -6.9306 27 1 4.5014 4.1097 -5.7503 28 1 6.8583 3.5583 -5.8962 29 6 3.6881 0.6152 0.0068 30 6 3.6096 -0.7274 0.0050 31 7 2.2947 -1.0921 -0.0025 32 6 1.8094 -2.4744 -0.0061 33 1 -0.3634 0.0000 -1.0277 34 1 -0.3633 -0.8900 0.5139 35 1 -0.3633 0.8900 0.5137 36 1 2.2957 5.3780 1.0328 37 1 1.6126 5.2321 -0.6213 38 1 4.5997 2.8971 -0.9307 39 1 4.5654 2.6915 0.8465 40 1 6.9855 6.2043 1.2533 41 1 7.1666 7.0732 -0.2956 42 1 4.7343 6.8328 1.4968 43 1 5.3850 8.2718 0.6727 44 1 5.8881 7.7883 -1.7861 45 1 4.5622 7.0999 -2.7778 46 1 6.7429 7.3547 -3.4206 47 1 4.5890 1.2110 0.0120 48 1 4.4498 -1.4060 0.0084 49 1 1.6839 -2.8181 1.0207 50 1 0.8519 -2.5219 -0.5248 51 1 2.5314 -3.1116 -0.5168 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087388301.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:55 Heat of formation + Delta-G solvation = 89.006535 kcal Electronic energy + Delta-G solvation = -31880.554705 eV Core-core repulsion = 27976.023590 eV Total energy + Delta-G solvation = -3904.531115 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.39182 -40.77671 -38.37396 -35.74963 -33.45095 -32.91674 -31.59287 -31.21645 -30.16876 -29.61689 -27.81258 -26.43685 -26.34471 -25.10296 -23.99353 -21.75542 -21.60947 -20.90884 -20.24515 -19.91388 -18.29664 -17.69865 -16.96235 -16.90827 -15.95029 -15.73552 -15.58035 -15.07533 -14.75389 -14.52176 -14.24629 -13.68845 -13.57772 -13.28779 -13.17816 -13.10966 -12.91422 -12.77772 -12.67843 -12.53784 -12.33779 -12.14350 -12.07373 -11.59369 -11.54842 -11.30965 -11.09557 -11.03933 -10.95300 -10.69297 -10.48276 -10.35711 -10.03244 -9.90168 -9.64088 -9.45436 -9.19304 -8.93883 -8.59077 -8.36721 -8.34429 -8.01120 -6.91494 -6.04012 -3.11470 1.86570 2.48796 2.71494 3.30144 3.51528 3.57392 3.73420 3.85227 4.50214 4.56694 4.69536 4.73033 4.84000 4.90651 4.91416 5.07301 5.16247 5.20422 5.30615 5.35985 5.41699 5.52814 5.56613 5.62110 5.64109 5.65639 5.73449 5.84236 5.90638 5.92223 5.97464 5.99869 6.05262 6.17603 6.23510 6.24339 6.31550 6.35181 6.42445 6.47565 6.60703 6.74189 6.79271 6.82327 6.93662 6.99549 7.07723 7.15160 7.21437 7.26936 7.87972 7.97925 8.53689 8.64186 9.05739 9.84575 10.32729 11.27582 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011398 B = 0.003873 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.941710 B = 7227.122965 C = 8401.566082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.097 3.903 3 C -0.227 4.227 4 C 0.604 3.396 5 O -0.566 6.566 6 N -0.618 5.618 7 C 0.142 3.858 8 C -0.124 4.124 9 H 0.097 0.903 10 C -0.127 4.127 11 H 0.068 0.932 12 C 0.123 3.877 13 C 0.183 3.817 14 H 0.080 0.920 15 C -0.132 4.132 16 C -0.110 4.110 17 C -0.085 4.085 18 H 0.076 0.924 19 C 0.159 3.841 20 N -0.598 5.598 21 C -0.340 4.340 22 H 0.060 0.940 23 C -0.023 4.023 24 N -0.921 5.921 25 Si 1.057 2.943 26 H -0.286 1.286 27 H -0.295 1.295 28 H -0.294 1.294 29 C -0.170 4.170 30 C -0.025 4.025 31 N -0.448 5.448 32 C 0.069 3.931 33 H 0.075 0.925 34 H 0.058 0.942 35 H 0.100 0.900 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.051 0.949 41 H 0.067 0.933 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.031 0.969 45 H 0.065 0.935 46 H 0.268 0.732 47 H 0.157 0.843 48 H 0.165 0.835 49 H 0.072 0.928 50 H 0.083 0.917 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.475 -13.076 12.330 19.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.019 4.019 3 C -0.236 4.236 4 C 0.396 3.604 5 O -0.447 6.447 6 N -0.352 5.352 7 C 0.022 3.978 8 C -0.144 4.144 9 H 0.115 0.885 10 C -0.149 4.149 11 H 0.086 0.914 12 C 0.002 3.998 13 C 0.075 3.925 14 H 0.098 0.902 15 C -0.171 4.171 16 C -0.147 4.147 17 C -0.105 4.105 18 H 0.094 0.906 19 C 0.035 3.965 20 N -0.322 5.322 21 C -0.468 4.468 22 H 0.078 0.922 23 C -0.225 4.225 24 N -0.562 5.562 25 Si 0.887 3.113 26 H -0.212 1.212 27 H -0.222 1.222 28 H -0.222 1.222 29 C -0.193 4.193 30 C -0.151 4.151 31 N -0.125 5.125 32 C -0.072 4.072 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.119 0.881 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.049 0.951 45 H 0.083 0.917 46 H 0.080 0.920 47 H 0.174 0.826 48 H 0.183 0.817 49 H 0.091 0.909 50 H 0.102 0.898 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.327 -13.241 10.568 18.458 hybrid contribution 0.479 -0.418 1.630 1.750 sum -6.848 -13.660 12.198 19.552 Atomic orbital electron populations 1.20521 0.87289 1.03770 1.03218 1.20254 0.93608 0.85174 1.02858 1.20116 0.93272 0.91872 1.18370 1.16995 0.84431 0.83462 0.75562 1.90683 1.16356 1.84278 1.53393 1.50308 1.06389 1.05811 1.72733 1.21613 0.97609 0.78390 1.00203 1.21136 0.92593 0.96334 1.04297 0.88451 1.22956 0.98643 0.93751 0.99516 0.91424 1.21756 0.79088 0.97710 1.01259 1.21221 0.92217 0.93689 0.85341 0.90244 1.22843 0.96880 0.98255 0.99112 1.22065 0.95837 0.99166 0.97641 1.21617 0.96950 0.94326 0.97603 0.90606 1.22258 0.92509 0.87312 0.94467 1.45525 1.67402 1.18966 1.00339 1.19896 1.48454 0.91748 0.86732 0.92248 1.25616 0.98963 0.97635 1.00273 1.70798 1.43350 1.10693 1.31371 0.83631 0.76271 0.74803 0.76562 1.21186 1.22219 1.22160 1.22638 0.96569 0.93521 1.06596 1.21723 0.85211 0.96351 1.11768 1.43529 1.06091 1.05900 1.57014 1.22048 1.01632 0.80352 1.03210 0.90685 0.92269 0.88125 0.91932 0.90466 0.90619 0.91603 0.93036 0.91453 0.92810 0.92860 0.95091 0.91702 0.92024 0.82605 0.81725 0.90936 0.89810 0.89647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.05 9.26 36.00 0.33 -0.72 16 2 C 0.10 1.34 6.89 -81.88 -0.56 0.78 16 3 C -0.23 -3.68 6.23 -103.35 -0.64 -4.33 16 4 C 0.60 11.24 7.87 -12.59 -0.10 11.14 16 5 O -0.57 -11.57 15.15 5.25 0.08 -11.49 16 6 N -0.62 -10.97 3.50 -170.04 -0.59 -11.56 16 7 C 0.14 2.42 7.08 -1.94 -0.01 2.40 16 8 C -0.12 -2.23 2.27 -92.13 -0.21 -2.43 16 9 H 0.10 2.18 6.09 -51.93 -0.32 1.86 16 10 C -0.13 -2.12 2.35 -89.82 -0.21 -2.33 16 11 H 0.07 1.04 6.31 -51.93 -0.33 0.72 16 12 C 0.12 2.02 4.69 -3.47 -0.02 2.00 16 13 C 0.18 3.44 4.42 -65.34 -0.29 3.15 16 14 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 15 C -0.13 -2.21 5.45 -24.61 -0.13 -2.35 16 16 C -0.11 -1.70 5.30 -25.39 -0.13 -1.83 16 17 C -0.08 -1.49 4.19 -89.57 -0.37 -1.86 16 18 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 19 C 0.16 3.51 3.84 -0.53 0.00 3.51 16 20 N -0.60 -13.79 1.73 -157.90 -0.27 -14.06 16 21 C -0.34 -9.04 9.76 -15.06 -0.15 -9.19 16 22 H 0.06 1.60 7.95 -52.49 -0.42 1.18 16 23 C -0.02 -0.65 4.88 -17.43 -0.09 -0.73 16 24 N -0.92 -27.05 12.61 55.49 0.70 -26.35 16 25 Si 1.06 25.42 29.99 -169.99 -5.10 20.33 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 29 C -0.17 -2.39 9.47 -37.50 -0.35 -2.75 16 30 C -0.03 -0.29 11.34 -16.82 -0.19 -0.48 16 31 N -0.45 -4.99 3.09 -119.88 -0.37 -5.36 16 32 C 0.07 0.44 10.60 59.85 0.63 1.07 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.50 7.59 -51.93 -0.39 0.11 16 35 H 0.10 1.38 6.47 -51.93 -0.34 1.04 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 38 H 0.08 1.38 7.47 -51.93 -0.39 0.99 16 39 H 0.07 0.94 6.46 -51.93 -0.34 0.61 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 1.27 7.32 -51.93 -0.38 0.89 16 42 H 0.05 0.76 6.92 -51.93 -0.36 0.40 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.03 0.71 6.31 -51.93 -0.33 0.39 16 45 H 0.06 1.63 7.21 -51.93 -0.37 1.26 16 46 H 0.27 7.83 6.14 -40.82 -0.25 7.58 16 47 H 0.16 2.10 4.79 -52.48 -0.25 1.85 16 48 H 0.17 1.36 8.06 -52.48 -0.42 0.94 16 49 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 50 H 0.08 0.45 7.51 -51.93 -0.39 0.06 16 51 H 0.08 0.40 8.13 -51.93 -0.42 -0.02 16 LS Contribution 379.15 15.07 5.71 5.71 Total: -1.00 -32.89 379.15 -10.22 -43.10 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -7.87 Total: 4.61 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -2.50 Total: -4.94 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: -0.54 Total: -57.33 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.08 Total: -11.49 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -5.10 Total: 20.33 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.89 -10.22 -43.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087388301.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.109 kcal (2) G-P(sol) polarization free energy of solvation -32.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds