Wall clock time and date at job start Wed Apr 1 2020 02:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.36773 * 125.79581 * 2 1 4 4 C 1.47255 * 126.94366 * 0.03179 * 3 2 1 5 5 O 1.21627 * 120.00564 * 7.11476 * 4 3 2 6 6 N 1.34781 * 119.99772 * 187.11118 * 4 3 2 7 7 C 1.49463 * 125.97456 * 185.22616 * 6 4 3 8 8 C 1.48559 * 103.90748 * 175.57260 * 7 6 4 9 9 H 1.09005 * 104.27562 * 287.56046 * 8 7 6 10 10 C 1.56678 * 103.43040 * 33.59944 * 8 7 6 11 11 H 1.08997 * 114.17542 * 70.45168 * 10 8 7 12 12 C 1.49391 * 125.97230 * 4.92711 * 6 4 3 13 13 C 1.53754 * 101.00872 * 192.14117 * 10 8 7 14 14 H 1.09003 * 113.68693 * 154.46604 * 13 10 8 15 15 C 1.53930 * 108.95685 * 26.13673 * 13 10 8 16 16 C 1.52072 * 109.87755 * 284.44435 * 15 13 10 17 17 C 1.49490 * 130.88326 * 164.10013 * 8 7 6 18 18 H 1.08997 * 114.05596 * 21.00780 * 17 8 7 19 19 C 1.56654 * 108.17218 * 253.95028 * 17 8 7 20 20 N 1.48555 * 105.80283 * 291.64376 * 19 17 8 21 21 C 1.36935 * 123.39010 * 214.53480 * 20 19 17 22 22 H 1.07999 * 119.99778 * 162.96765 * 21 20 19 23 23 C 1.38814 * 120.00064 * 342.96679 * 21 20 19 24 24 N 1.31614 * 120.00175 * 343.86176 * 23 21 20 25 25 Si 1.86797 * 119.99865 * 163.85854 * 23 21 20 26 26 H 1.48503 * 109.47239 * 94.98735 * 25 23 21 27 27 H 1.48503 * 109.47338 * 214.98877 * 25 23 21 28 28 H 1.48506 * 109.47258 * 334.98460 * 25 23 21 29 29 C 1.46687 * 106.11202 * 180.28380 * 3 2 1 30 30 C 1.34490 * 106.33268 * 359.74886 * 29 3 2 31 31 N 1.34654 * 125.80494 * 179.85211 * 2 1 3 32 32 C 1.46502 * 124.84861 * 359.95707 * 31 2 1 33 33 H 1.09001 * 109.47017 * 270.16937 * 1 2 3 34 34 H 1.08997 * 109.47307 * 30.17633 * 1 2 3 35 35 H 1.09001 * 109.46964 * 150.17699 * 1 2 3 36 36 H 1.09003 * 110.53854 * 294.17579 * 7 6 4 37 37 H 1.09001 * 110.53922 * 56.82113 * 7 6 4 38 38 H 1.08999 * 110.75175 * 271.46612 * 12 6 4 39 39 H 1.08993 * 110.75787 * 34.84234 * 12 6 4 40 40 H 1.08998 * 109.55806 * 43.96006 * 15 13 10 41 41 H 1.08997 * 109.56396 * 164.29868 * 15 13 10 42 42 H 1.09006 * 109.34236 * 279.38055 * 16 15 13 43 43 H 1.09003 * 111.22105 * 157.49333 * 16 15 13 44 44 H 1.08998 * 110.05513 * 172.78019 * 19 17 8 45 45 H 1.09002 * 110.75971 * 50.88628 * 19 17 8 46 46 H 0.97004 * 120.00409 * 180.02562 * 24 23 21 47 47 H 1.07996 * 126.83703 * 179.72214 * 29 3 2 48 48 H 1.08002 * 125.57269 * 179.97438 * 30 29 3 49 49 H 1.09000 * 109.47262 * 269.72511 * 32 31 2 50 50 H 1.08998 * 109.47280 * 29.72822 * 32 31 2 51 51 H 1.09006 * 109.46923 * 149.72275 * 32 31 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3071 1.1094 0.0000 4 6 1.8701 2.5156 0.0007 5 8 0.6916 2.7863 0.1317 6 7 2.7762 3.5028 -0.1439 7 6 2.4994 4.9688 -0.0536 8 6 3.8415 5.5939 -0.1763 9 1 4.3269 5.3774 0.7754 10 6 4.6039 4.6308 -1.1489 11 1 4.2502 4.6652 -2.1793 12 6 4.2340 3.3229 -0.4163 13 6 6.0476 5.1353 -0.9897 14 1 6.8021 4.3799 -1.2092 15 6 6.1994 5.7875 0.3963 16 6 5.5400 7.1578 0.3980 17 6 4.2409 7.0032 -0.4747 18 1 3.4614 7.7380 -0.2736 19 6 4.7795 7.0575 -1.9447 20 7 6.0572 6.2998 -1.9357 21 6 7.1350 6.6305 -2.7130 22 1 8.1118 6.2340 -2.4785 23 6 6.9720 7.4752 -3.8024 24 7 5.7683 7.7048 -4.2829 25 14 8.4609 8.2862 -4.5864 26 1 8.9204 7.4693 -5.7383 27 1 8.0930 9.6452 -5.0588 28 1 9.5531 8.3890 -3.5854 29 6 3.6882 0.6153 -0.0070 30 6 3.6096 -0.7273 -0.0049 31 7 2.2948 -1.0921 0.0028 32 6 1.8095 -2.4743 0.0073 33 1 -0.3633 0.0030 1.0277 34 1 -0.3634 0.8884 -0.5165 35 1 -0.3633 -0.8916 -0.5111 36 1 1.8530 5.2871 -0.8716 37 1 2.0472 5.2141 0.9074 38 1 4.7921 3.2280 0.5151 39 1 4.4032 2.4591 -1.0591 40 1 5.7161 5.1635 1.1481 41 1 7.2574 5.8958 0.6348 42 1 6.2145 7.8836 -0.0562 43 1 5.2791 7.4689 1.4096 44 1 4.9601 8.0915 -2.2387 45 1 4.0735 6.5918 -2.6323 46 1 5.6544 8.2948 -5.0444 47 1 4.5889 1.2110 -0.0131 48 1 4.4498 -1.4058 -0.0091 49 1 1.6944 -2.8157 1.0360 50 1 0.8468 -2.5231 -0.5016 51 1 2.5263 -3.1127 -0.5094 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087388302.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:59 Heat of formation + Delta-G solvation = 105.363203 kcal Electronic energy + Delta-G solvation = -31459.120576 eV Core-core repulsion = 27555.298739 eV Total energy + Delta-G solvation = -3903.821837 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.51929 -40.97742 -38.47052 -35.80148 -33.28648 -32.90058 -31.67559 -30.94681 -30.06684 -29.71992 -27.99004 -26.48123 -26.44642 -25.42166 -23.58053 -21.68008 -21.63120 -21.17460 -20.23934 -19.96549 -18.37051 -17.34214 -17.06999 -16.52480 -15.91636 -15.81897 -15.72019 -15.04661 -14.79157 -14.51297 -14.22712 -14.09764 -13.63308 -13.35292 -13.22690 -13.09756 -12.86577 -12.81918 -12.67665 -12.38159 -12.19457 -12.12237 -12.08821 -11.62609 -11.41780 -11.13330 -11.06779 -10.95382 -10.88424 -10.69200 -10.47330 -10.42366 -10.19791 -9.93372 -9.60020 -9.50826 -9.13271 -8.87805 -8.67957 -8.44899 -8.41707 -8.09139 -6.72231 -5.72396 -3.05211 1.78544 2.38546 2.63825 3.29917 3.40298 3.47723 3.49025 3.74297 4.43403 4.48200 4.62719 4.71721 4.76013 4.82377 4.97526 4.98885 5.07296 5.14765 5.26044 5.42407 5.45923 5.54162 5.57943 5.61289 5.63863 5.74425 5.81090 5.83974 5.88496 5.92883 5.97147 6.03233 6.10444 6.14639 6.16929 6.33150 6.36587 6.41302 6.57313 6.59248 6.72880 6.75691 6.82489 6.99495 7.01585 7.05538 7.12626 7.17930 7.45959 7.64897 7.82999 7.89342 8.30742 8.56553 9.20046 9.82650 10.48417 11.38188 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017631 B = 0.002866 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.706450 B = 9766.113895 C =10308.845775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.098 3.902 3 C -0.227 4.227 4 C 0.604 3.396 5 O -0.561 6.561 6 N -0.616 5.616 7 C 0.139 3.861 8 C -0.137 4.137 9 H 0.072 0.928 10 C -0.113 4.113 11 H 0.102 0.898 12 C 0.103 3.897 13 C 0.169 3.831 14 H 0.077 0.923 15 C -0.126 4.126 16 C -0.096 4.096 17 C -0.097 4.097 18 H 0.078 0.922 19 C 0.188 3.812 20 N -0.598 5.598 21 C -0.235 4.235 22 H 0.070 0.930 23 C -0.004 4.004 24 N -0.910 5.910 25 Si 0.901 3.099 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.281 1.281 29 C -0.171 4.171 30 C -0.023 4.023 31 N -0.447 5.447 32 C 0.068 3.932 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.049 0.951 41 H 0.052 0.948 42 H 0.073 0.927 43 H 0.042 0.958 44 H 0.071 0.929 45 H 0.028 0.972 46 H 0.252 0.748 47 H 0.156 0.844 48 H 0.166 0.834 49 H 0.073 0.927 50 H 0.084 0.916 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.355 -17.141 11.039 21.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.018 4.018 3 C -0.237 4.237 4 C 0.396 3.604 5 O -0.442 6.442 6 N -0.350 5.350 7 C 0.018 3.982 8 C -0.156 4.156 9 H 0.090 0.910 10 C -0.133 4.133 11 H 0.121 0.879 12 C -0.019 4.019 13 C 0.062 3.938 14 H 0.095 0.905 15 C -0.166 4.166 16 C -0.134 4.134 17 C -0.117 4.117 18 H 0.097 0.903 19 C 0.064 3.936 20 N -0.323 5.323 21 C -0.364 4.364 22 H 0.088 0.912 23 C -0.201 4.201 24 N -0.556 5.556 25 Si 0.731 3.269 26 H -0.218 1.218 27 H -0.217 1.217 28 H -0.207 1.207 29 C -0.195 4.195 30 C -0.149 4.149 31 N -0.124 5.124 32 C -0.073 4.073 33 H 0.094 0.906 34 H 0.117 0.883 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.091 0.909 43 H 0.061 0.939 44 H 0.089 0.911 45 H 0.046 0.954 46 H 0.062 0.938 47 H 0.174 0.826 48 H 0.183 0.817 49 H 0.092 0.908 50 H 0.103 0.897 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.076 -17.290 10.957 21.658 hybrid contribution 0.971 0.266 -0.533 1.139 sum -6.105 -17.023 10.424 20.874 Atomic orbital electron populations 1.20508 0.87239 1.03717 1.03202 1.20264 0.93650 0.85182 1.02708 1.20091 0.93268 0.91798 1.18530 1.16977 0.84219 0.83427 0.75803 1.90706 1.16690 1.84183 1.52638 1.49434 1.08892 1.05914 1.70740 1.20730 0.97278 0.79052 1.01126 1.21560 0.94785 0.97299 1.01907 0.91032 1.23791 0.98064 0.92122 0.99325 0.87939 1.22860 0.80290 0.99487 0.99263 1.21578 0.92605 0.89762 0.89821 0.90502 1.22175 0.99402 0.96835 0.98139 1.22102 0.96565 0.97739 0.97012 1.22337 0.96000 0.92967 1.00437 0.90324 1.21723 0.86204 0.97329 0.88375 1.45570 1.12934 1.27116 1.46641 1.19107 0.87060 1.25249 1.04988 0.91237 1.24841 0.96308 1.02285 0.96710 1.70000 1.20208 1.39948 1.25490 0.86291 0.82422 0.79033 0.79120 1.21776 1.21741 1.20670 1.22560 0.96435 0.93490 1.06987 1.21736 0.85246 0.96347 1.11582 1.43529 1.06090 1.05955 1.56861 1.22069 1.01663 0.80253 1.03350 0.90611 0.88334 0.92181 0.91754 0.91684 0.91338 0.89871 0.93245 0.92930 0.90872 0.93918 0.91071 0.95358 0.93794 0.82633 0.81669 0.90807 0.89749 0.89658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.95 9.45 36.01 0.34 -0.61 16 2 C 0.10 1.23 6.89 -81.88 -0.56 0.67 16 3 C -0.23 -3.35 6.19 -103.35 -0.64 -3.99 16 4 C 0.60 10.43 7.85 -12.59 -0.10 10.33 16 5 O -0.56 -10.91 15.29 5.25 0.08 -10.83 16 6 N -0.62 -10.09 3.42 -171.85 -0.59 -10.67 16 7 C 0.14 2.29 6.84 -4.56 -0.03 2.25 16 8 C -0.14 -2.26 2.34 -92.54 -0.22 -2.47 16 9 H 0.07 1.14 3.84 -51.93 -0.20 0.94 16 10 C -0.11 -1.97 2.91 -87.51 -0.25 -2.23 16 11 H 0.10 2.15 6.99 -51.93 -0.36 1.78 16 12 C 0.10 1.52 4.59 -1.70 -0.01 1.51 16 13 C 0.17 3.18 4.25 -65.08 -0.28 2.90 16 14 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 15 C -0.13 -2.11 5.44 -26.72 -0.15 -2.25 16 16 C -0.10 -1.68 5.61 -24.89 -0.14 -1.82 16 17 C -0.10 -1.76 4.52 -88.06 -0.40 -2.15 16 18 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 19 C 0.19 4.30 4.10 -0.94 0.00 4.30 16 20 N -0.60 -14.00 2.22 -158.03 -0.35 -14.35 16 21 C -0.23 -6.20 10.05 -15.06 -0.15 -6.35 16 22 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 23 C 0.00 -0.11 5.16 -17.43 -0.09 -0.20 16 24 N -0.91 -26.06 10.99 55.49 0.61 -25.45 16 25 Si 0.90 21.59 29.58 -169.99 -5.03 16.56 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 28 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 29 C -0.17 -2.11 9.27 -37.50 -0.35 -2.46 16 30 C -0.02 -0.24 11.34 -16.82 -0.19 -0.43 16 31 N -0.45 -4.42 3.09 -119.88 -0.37 -4.79 16 32 C 0.07 0.36 10.82 59.85 0.65 1.01 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.10 1.27 6.65 -51.93 -0.35 0.93 16 35 H 0.06 0.46 6.92 -51.93 -0.36 0.10 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.07 0.91 7.26 -51.93 -0.38 0.53 16 39 H 0.08 1.16 5.70 -51.93 -0.30 0.87 16 40 H 0.05 0.73 5.62 -51.93 -0.29 0.44 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.07 1.46 7.66 -51.93 -0.40 1.07 16 43 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 1.84 6.78 -51.93 -0.35 1.49 16 45 H 0.03 0.72 7.14 -51.93 -0.37 0.34 16 46 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 47 H 0.16 1.76 5.18 -52.49 -0.27 1.49 16 48 H 0.17 1.13 8.06 -52.49 -0.42 0.71 16 49 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 50 H 0.08 0.37 6.87 -51.93 -0.36 0.01 16 51 H 0.08 0.31 8.13 -51.93 -0.42 -0.11 16 LS Contribution 377.65 15.07 5.69 5.69 Total: -1.00 -32.29 377.65 -10.28 -42.57 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -7.76 Total: 3.27 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -2.57 Total: -2.00 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: -0.70 Total: -55.26 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.08 Total: -10.83 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.29 -10.28 -42.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087388302.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.933 kcal (2) G-P(sol) polarization free energy of solvation -32.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds