Wall clock time and date at job start Wed Apr 1 2020 03:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38632 * 120.75442 * 2 1 4 4 C 1.38551 * 119.35389 * 179.97438 * 3 2 1 5 5 C 1.50694 * 119.55021 * 179.97438 * 4 3 2 6 6 N 1.31527 * 120.90233 * 0.02562 * 4 3 2 7 7 C 1.32713 * 121.64468 * 359.97438 * 6 4 3 8 8 C 1.48174 * 119.72401 * 179.97438 * 7 6 4 9 9 O 1.21516 * 119.99632 * 180.02562 * 8 7 6 10 10 N 1.34770 * 119.99735 * 0.02562 * 8 7 6 11 11 C 1.46507 * 119.99721 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.46908 * 179.97438 * 11 10 8 13 13 C 1.55096 * 112.14288 * 299.03431 * 12 11 10 14 14 C 1.54266 * 106.60426 * 243.78020 * 13 12 11 15 15 C 1.54686 * 104.11825 * 333.29565 * 14 13 12 16 16 C 1.54573 * 111.31518 * 179.97438 * 12 11 10 17 17 H 1.09001 * 111.92560 * 18.14634 * 16 12 11 18 18 N 1.46895 * 107.37096 * 255.05075 * 16 12 11 19 19 C 1.36936 * 125.25336 * 181.65562 * 18 16 12 20 20 H 1.07997 * 119.99934 * 15.51452 * 19 18 16 21 21 C 1.38807 * 119.99820 * 195.51252 * 19 18 16 22 22 N 1.31617 * 120.00094 * 30.98302 * 21 19 18 23 23 Si 1.86802 * 119.99817 * 211.25009 * 21 19 18 24 24 H 1.48501 * 109.47079 * 179.72830 * 23 21 19 25 25 H 1.48500 * 109.47401 * 299.72794 * 23 21 19 26 26 H 1.48497 * 109.47178 * 59.73119 * 23 21 19 27 27 C 1.46734 * 109.49565 * 1.91943 * 18 16 12 28 28 C 1.53871 * 111.73540 * 63.25751 * 12 11 10 29 29 C 1.38588 * 120.75740 * 180.26968 * 2 1 3 30 30 H 1.08995 * 109.46712 * 90.00452 * 1 2 3 31 31 H 1.08997 * 109.46932 * 209.99857 * 1 2 3 32 32 H 1.08996 * 109.47219 * 330.00157 * 1 2 3 33 33 H 1.07994 * 120.31857 * 359.97185 * 3 2 1 34 34 H 1.08998 * 109.47240 * 270.01915 * 5 4 3 35 35 H 1.09000 * 109.47089 * 30.02364 * 5 4 3 36 36 H 1.09008 * 109.47499 * 150.01838 * 5 4 3 37 37 H 0.97002 * 120.00348 * 359.97438 * 10 8 7 38 38 H 1.08999 * 109.47194 * 59.99897 * 11 10 8 39 39 H 1.09003 * 109.47173 * 299.99820 * 11 10 8 40 40 H 1.08998 * 110.54953 * 124.17571 * 13 12 11 41 41 H 1.08997 * 109.47088 * 2.79355 * 13 12 11 42 42 H 1.08995 * 110.50030 * 214.63405 * 14 13 12 43 43 H 1.09001 * 110.50168 * 91.95353 * 14 13 12 44 44 H 1.09004 * 110.61163 * 278.83407 * 15 14 13 45 45 H 1.08988 * 110.74891 * 155.91046 * 15 14 13 46 46 H 0.97001 * 120.00280 * 5.79266 * 22 21 19 47 47 H 1.08997 * 110.04557 * 100.24840 * 27 18 16 48 48 H 1.09005 * 110.04747 * 221.70655 * 27 18 16 49 49 H 1.08994 * 110.57445 * 212.76279 * 28 12 11 50 50 H 1.09000 * 110.57279 * 335.64691 * 28 12 11 51 51 H 1.07998 * 120.47259 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.1914 0.0000 4 6 3.6010 1.1575 0.0005 5 6 4.3760 2.4499 0.0000 6 7 4.2487 0.0128 0.0005 7 6 3.6083 -1.1496 0.0005 8 6 4.3808 -2.4140 0.0000 9 8 3.7994 -3.4811 -0.0005 10 7 5.7281 -2.3805 0.0000 11 6 6.4919 -3.6307 0.0000 12 6 7.9887 -3.3139 -0.0006 13 6 8.4157 -2.5110 -1.2570 14 6 9.3937 -3.4089 -2.0426 15 6 10.0183 -4.3224 -0.9618 16 6 8.8366 -4.6063 0.0000 17 1 8.2564 -5.4739 -0.3142 18 7 9.3799 -4.7737 1.3544 19 6 10.2115 -5.7860 1.7529 20 1 10.7167 -6.3918 1.0153 21 6 10.4051 -6.0335 3.1050 22 7 9.4376 -5.7905 3.9636 23 14 12.0414 -6.7044 3.7067 24 1 11.9947 -6.8739 5.1813 25 1 12.3038 -8.0179 3.0655 26 1 13.1264 -5.7547 3.3518 27 6 8.8890 -3.6922 2.2161 28 6 8.4134 -2.5663 1.2755 29 6 2.2158 -1.1909 -0.0056 30 1 -0.3632 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6936 2.1366 -0.0005 34 1 4.5630 2.7610 -1.0278 35 1 3.7996 3.2194 0.5134 36 1 5.3262 2.3041 0.5140 37 1 6.1921 -1.5287 0.0000 38 1 6.2428 -4.2087 -0.8900 39 1 6.2428 -4.2087 0.8900 40 1 8.9096 -1.5831 -0.9685 41 1 7.5376 -2.2934 -1.8649 42 1 10.1633 -2.8054 -2.5238 43 1 8.8564 -4.0038 -2.7812 44 1 10.8221 -3.8040 -0.4390 45 1 10.3845 -5.2488 -1.4039 46 1 8.5628 -5.5188 3.6446 47 1 8.0591 -4.0483 2.8265 48 1 9.6940 -3.3287 2.8549 49 1 9.2262 -1.8727 1.0605 50 1 7.5644 -2.0399 1.7115 51 1 1.6960 -2.1376 -0.0105 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094454622.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:36 Heat of formation + Delta-G solvation = 5.303510 kcal Electronic energy + Delta-G solvation = -30445.095612 eV Core-core repulsion = 26536.934861 eV Total energy + Delta-G solvation = -3908.160751 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.94628 -39.82253 -38.68173 -34.99379 -34.54044 -34.05421 -33.06461 -31.80908 -30.23746 -28.39295 -28.19517 -27.73272 -26.49262 -25.31629 -23.77269 -23.55245 -21.57629 -20.73579 -20.16877 -19.76107 -18.58228 -17.72426 -17.40590 -16.78892 -16.25720 -15.60023 -15.45433 -15.03467 -15.00108 -14.50592 -14.31716 -13.80532 -13.72806 -13.64347 -13.54629 -13.28125 -13.22004 -13.16655 -12.94855 -12.86478 -12.55592 -12.35563 -12.12363 -12.01251 -11.57186 -11.40269 -11.17580 -10.68320 -10.61592 -10.45812 -10.39729 -10.26915 -10.11683 -10.00162 -9.89932 -9.86348 -9.78215 -9.67316 -9.49519 -9.29864 -8.87989 -8.28741 -6.86690 -6.03440 -3.05294 0.41584 0.87483 2.63543 3.08975 3.54012 3.58230 3.62824 3.75900 3.82646 4.20186 4.41346 4.63147 4.63933 4.73580 4.84107 4.91467 4.96378 4.97049 5.07414 5.11639 5.22121 5.26159 5.34368 5.37026 5.45452 5.48366 5.52930 5.67247 5.67893 5.74287 5.75574 5.80976 5.89716 5.95200 5.99397 6.07521 6.12483 6.21880 6.30805 6.32656 6.35969 6.39323 6.54691 6.57206 6.69557 6.80774 6.97993 7.11853 7.17919 7.38966 7.68122 7.90734 8.20720 8.57082 9.10490 9.89953 10.44814 11.27828 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016311 B = 0.002562 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.240194 B =10924.548718 C =11354.519697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.046 4.046 3 C -0.156 4.156 4 C 0.130 3.870 5 C -0.104 4.104 6 N -0.463 5.463 7 C 0.093 3.907 8 C 0.566 3.434 9 O -0.535 6.535 10 N -0.701 5.701 11 C 0.140 3.860 12 C -0.081 4.081 13 C -0.109 4.109 14 C -0.123 4.123 15 C -0.127 4.127 16 C 0.171 3.829 17 H 0.046 0.954 18 N -0.593 5.593 19 C -0.336 4.336 20 H 0.065 0.935 21 C -0.025 4.025 22 N -0.913 5.913 23 Si 1.059 2.941 24 H -0.287 1.287 25 H -0.294 1.294 26 H -0.295 1.295 27 C 0.147 3.853 28 C -0.122 4.122 29 C -0.121 4.121 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.138 0.862 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.410 0.590 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.070 0.930 45 H 0.055 0.945 46 H 0.269 0.731 47 H 0.024 0.976 48 H 0.043 0.957 49 H 0.066 0.934 50 H 0.061 0.939 51 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.416 18.044 -11.253 25.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.054 4.054 3 C -0.176 4.176 4 C -0.010 4.010 5 C -0.162 4.162 6 N -0.176 5.176 7 C -0.045 4.045 8 C 0.350 3.650 9 O -0.411 6.411 10 N -0.351 5.351 11 C 0.017 3.983 12 C -0.082 4.082 13 C -0.147 4.147 14 C -0.161 4.161 15 C -0.167 4.167 16 C 0.063 3.937 17 H 0.064 0.936 18 N -0.317 5.317 19 C -0.463 4.463 20 H 0.083 0.917 21 C -0.227 4.227 22 N -0.554 5.554 23 Si 0.889 3.111 24 H -0.212 1.212 25 H -0.221 1.221 26 H -0.223 1.223 27 C 0.021 3.979 28 C -0.161 4.161 29 C -0.142 4.142 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.156 0.844 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.247 0.753 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.089 0.911 45 H 0.073 0.927 46 H 0.080 0.920 47 H 0.042 0.958 48 H 0.062 0.938 49 H 0.085 0.915 50 H 0.080 0.920 51 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -12.959 16.715 -9.833 23.324 hybrid contribution -1.560 0.722 -1.371 2.199 sum -14.519 17.437 -11.205 25.306 Atomic orbital electron populations 1.20839 0.89636 1.03675 1.03134 1.20352 0.97137 0.92509 0.95415 1.22049 0.94783 0.98864 1.01865 1.21295 0.91195 0.93781 0.94750 1.20739 1.00562 0.91530 1.03323 1.67390 1.41061 0.97575 1.11600 1.21180 0.91708 0.92040 0.99557 1.17859 0.82528 0.87282 0.77338 1.90798 1.70033 1.29982 1.50296 1.45897 1.05526 1.10995 1.72704 1.21390 0.89295 0.85044 1.02590 1.22153 0.92789 0.97493 0.95785 1.22422 0.98679 0.98105 0.95474 1.22301 0.98004 0.97918 0.97840 1.22934 0.99341 0.98398 0.96029 1.21548 0.91468 0.92882 0.87797 0.93646 1.44425 1.55580 1.26596 1.05133 1.19668 1.20797 1.12329 0.93523 0.91720 1.25648 1.04085 1.00526 0.92482 1.70784 1.02512 1.44661 1.37418 0.83604 0.75839 0.75633 0.76015 1.21244 1.22106 1.22251 1.21233 0.97173 0.86952 0.92534 1.22578 0.99962 0.98162 0.95374 1.22011 0.93835 0.99604 0.98756 0.90275 0.90618 0.90802 0.84405 0.90193 0.90558 0.90035 0.75324 0.91269 0.90675 0.91589 0.92355 0.92369 0.92313 0.91092 0.92665 0.91953 0.95792 0.93844 0.91538 0.92016 0.83460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 10.06 36.01 0.36 -0.28 16 2 C -0.05 -0.40 5.91 -104.35 -0.62 -1.02 16 3 C -0.16 -1.23 9.45 -39.32 -0.37 -1.61 16 4 C 0.13 1.23 6.78 -82.61 -0.56 0.67 16 5 C -0.10 -0.66 10.17 36.00 0.37 -0.30 16 6 N -0.46 -5.61 9.45 -6.06 -0.06 -5.66 16 7 C 0.09 1.25 6.75 -83.00 -0.56 0.69 16 8 C 0.57 8.91 7.81 -12.18 -0.10 8.81 16 9 O -0.53 -9.95 16.32 5.35 0.09 -9.87 16 10 N -0.70 -10.37 4.68 -61.14 -0.29 -10.66 16 11 C 0.14 2.33 4.50 -4.04 -0.02 2.31 16 12 C -0.08 -1.36 0.55 -152.12 -0.08 -1.44 16 13 C -0.11 -1.52 5.70 -24.96 -0.14 -1.66 16 14 C -0.12 -1.76 6.85 -25.18 -0.17 -1.93 16 15 C -0.13 -2.32 6.21 -24.79 -0.15 -2.48 16 16 C 0.17 3.50 3.55 -65.84 -0.23 3.27 16 17 H 0.05 0.99 7.92 -51.93 -0.41 0.58 16 18 N -0.59 -14.79 2.91 -162.31 -0.47 -15.26 16 19 C -0.34 -9.43 9.65 -15.06 -0.15 -9.58 16 20 H 0.06 1.82 8.00 -52.49 -0.42 1.40 16 21 C -0.03 -0.73 5.07 -17.43 -0.09 -0.82 16 22 N -0.91 -27.97 12.96 55.49 0.72 -27.25 16 23 Si 1.06 25.75 30.02 -169.99 -5.10 20.64 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 C 0.15 3.44 5.43 -3.27 -0.02 3.42 16 28 C -0.12 -2.18 5.86 -25.64 -0.15 -2.33 16 29 C -0.12 -1.38 9.34 -39.05 -0.36 -1.74 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.40 8.10 -51.93 -0.42 -0.02 16 32 H 0.07 0.30 8.10 -51.93 -0.42 -0.12 16 33 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.33 8.08 -51.93 -0.42 -0.09 16 36 H 0.08 0.57 8.14 -51.92 -0.42 0.14 16 37 H 0.41 5.51 7.04 -40.82 -0.29 5.23 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 40 H 0.07 0.87 7.32 -51.93 -0.38 0.49 16 41 H 0.06 0.75 7.52 -51.93 -0.39 0.36 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.07 1.42 8.06 -51.93 -0.42 1.00 16 45 H 0.05 1.01 8.14 -51.94 -0.42 0.59 16 46 H 0.27 8.31 6.10 -40.82 -0.25 8.06 16 47 H 0.02 0.62 6.52 -51.93 -0.34 0.28 16 48 H 0.04 1.11 8.08 -51.93 -0.42 0.69 16 49 H 0.07 1.12 7.41 -51.93 -0.38 0.74 16 50 H 0.06 1.02 7.24 -51.93 -0.38 0.64 16 51 H 0.15 1.64 7.64 -52.49 -0.40 1.24 16 LS Contribution 403.61 15.07 6.08 6.08 Total: -1.00 -33.39 403.61 -10.41 -43.80 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -8.34 Total: 4.21 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: -3.05 Total: -6.03 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: -0.10 Total: -58.84 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.09 Total: -9.87 kcal Atomic # 14 Polarization: 25.75 SS G_CDS: -5.10 Total: 20.64 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.39 -10.41 -43.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094454622.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.103 kcal (2) G-P(sol) polarization free energy of solvation -33.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds