Wall clock time and date at job start Wed Apr 1 2020 03:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38632 * 120.75442 * 2 1 4 4 C 1.38551 * 119.35389 * 179.97438 * 3 2 1 5 5 C 1.50694 * 119.55021 * 179.97438 * 4 3 2 6 6 N 1.31527 * 120.90233 * 0.02562 * 4 3 2 7 7 C 1.32713 * 121.64468 * 359.97438 * 6 4 3 8 8 C 1.48174 * 119.72401 * 179.97438 * 7 6 4 9 9 O 1.21516 * 119.99632 * 180.02562 * 8 7 6 10 10 N 1.34770 * 119.99735 * 0.02562 * 8 7 6 11 11 C 1.46507 * 119.99721 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.46908 * 179.97438 * 11 10 8 13 13 C 1.55096 * 112.14288 * 299.03431 * 12 11 10 14 14 C 1.54266 * 106.60426 * 243.78020 * 13 12 11 15 15 C 1.54686 * 104.11825 * 333.29565 * 14 13 12 16 16 C 1.54573 * 111.31518 * 179.97438 * 12 11 10 17 17 H 1.09001 * 111.92560 * 18.14634 * 16 12 11 18 18 N 1.46895 * 107.37096 * 255.05075 * 16 12 11 19 19 C 1.36936 * 125.25336 * 181.65562 * 18 16 12 20 20 H 1.07997 * 119.99934 * 15.51452 * 19 18 16 21 21 C 1.38807 * 119.99820 * 195.51252 * 19 18 16 22 22 N 1.31617 * 120.00094 * 30.98302 * 21 19 18 23 23 Si 1.86802 * 119.99817 * 211.25009 * 21 19 18 24 24 H 1.48501 * 109.47079 * 179.72830 * 23 21 19 25 25 H 1.48500 * 109.47401 * 299.72794 * 23 21 19 26 26 H 1.48497 * 109.47178 * 59.73119 * 23 21 19 27 27 C 1.46734 * 109.49565 * 1.91943 * 18 16 12 28 28 C 1.53871 * 111.73540 * 63.25751 * 12 11 10 29 29 C 1.38588 * 120.75740 * 180.26968 * 2 1 3 30 30 H 1.08995 * 109.46712 * 90.00452 * 1 2 3 31 31 H 1.08997 * 109.46932 * 209.99857 * 1 2 3 32 32 H 1.08996 * 109.47219 * 330.00157 * 1 2 3 33 33 H 1.07994 * 120.31857 * 359.97185 * 3 2 1 34 34 H 1.08998 * 109.47240 * 270.01915 * 5 4 3 35 35 H 1.09000 * 109.47089 * 30.02364 * 5 4 3 36 36 H 1.09008 * 109.47499 * 150.01838 * 5 4 3 37 37 H 0.97002 * 120.00348 * 359.97438 * 10 8 7 38 38 H 1.08999 * 109.47194 * 59.99897 * 11 10 8 39 39 H 1.09003 * 109.47173 * 299.99820 * 11 10 8 40 40 H 1.08998 * 110.54953 * 124.17571 * 13 12 11 41 41 H 1.08997 * 109.47088 * 2.79355 * 13 12 11 42 42 H 1.08995 * 110.50030 * 214.63405 * 14 13 12 43 43 H 1.09001 * 110.50168 * 91.95353 * 14 13 12 44 44 H 1.09004 * 110.61163 * 278.83407 * 15 14 13 45 45 H 1.08988 * 110.74891 * 155.91046 * 15 14 13 46 46 H 0.97001 * 120.00280 * 5.79266 * 22 21 19 47 47 H 1.08997 * 110.04557 * 100.24840 * 27 18 16 48 48 H 1.09005 * 110.04747 * 221.70655 * 27 18 16 49 49 H 1.08994 * 110.57445 * 212.76279 * 28 12 11 50 50 H 1.09000 * 110.57279 * 335.64691 * 28 12 11 51 51 H 1.07998 * 120.47259 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.1914 0.0000 4 6 3.6010 1.1575 0.0005 5 6 4.3760 2.4499 0.0000 6 7 4.2487 0.0128 0.0005 7 6 3.6083 -1.1496 0.0005 8 6 4.3808 -2.4140 0.0000 9 8 3.7994 -3.4811 -0.0005 10 7 5.7281 -2.3805 0.0000 11 6 6.4919 -3.6307 0.0000 12 6 7.9887 -3.3139 -0.0006 13 6 8.4157 -2.5110 -1.2570 14 6 9.3937 -3.4089 -2.0426 15 6 10.0183 -4.3224 -0.9618 16 6 8.8366 -4.6063 0.0000 17 1 8.2564 -5.4739 -0.3142 18 7 9.3799 -4.7737 1.3544 19 6 10.2115 -5.7860 1.7529 20 1 10.7167 -6.3918 1.0153 21 6 10.4051 -6.0335 3.1050 22 7 9.4376 -5.7905 3.9636 23 14 12.0414 -6.7044 3.7067 24 1 11.9947 -6.8739 5.1813 25 1 12.3038 -8.0179 3.0655 26 1 13.1264 -5.7547 3.3518 27 6 8.8890 -3.6922 2.2161 28 6 8.4134 -2.5663 1.2755 29 6 2.2158 -1.1909 -0.0056 30 1 -0.3632 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6936 2.1366 -0.0005 34 1 4.5630 2.7610 -1.0278 35 1 3.7996 3.2194 0.5134 36 1 5.3262 2.3041 0.5140 37 1 6.1921 -1.5287 0.0000 38 1 6.2428 -4.2087 -0.8900 39 1 6.2428 -4.2087 0.8900 40 1 8.9096 -1.5831 -0.9685 41 1 7.5376 -2.2934 -1.8649 42 1 10.1633 -2.8054 -2.5238 43 1 8.8564 -4.0038 -2.7812 44 1 10.8221 -3.8040 -0.4390 45 1 10.3845 -5.2488 -1.4039 46 1 8.5628 -5.5188 3.6446 47 1 8.0591 -4.0483 2.8265 48 1 9.6940 -3.3287 2.8549 49 1 9.2262 -1.8727 1.0605 50 1 7.5644 -2.0399 1.7115 51 1 1.6960 -2.1376 -0.0105 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094454622.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:35 Heat of formation + Delta-G solvation = -15.082194 kcal Electronic energy + Delta-G solvation = -30445.979603 eV Core-core repulsion = 26536.934861 eV Total energy + Delta-G solvation = -3909.044741 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.90018 -41.17536 -39.95591 -36.60843 -35.71143 -35.10539 -33.88510 -33.55709 -31.97071 -29.62513 -29.02248 -28.34640 -28.17892 -26.54771 -25.71931 -24.71085 -22.34126 -22.12988 -21.67613 -21.17923 -19.95466 -19.49227 -18.81553 -17.71162 -17.01932 -16.91572 -16.66492 -16.49252 -16.33438 -15.68424 -15.48514 -15.36007 -15.20234 -15.10691 -14.68347 -14.58917 -14.29663 -14.13832 -13.78799 -13.75195 -13.43210 -13.27621 -13.08636 -13.07843 -12.96886 -12.81497 -12.61783 -12.47559 -12.28302 -11.96744 -11.90304 -11.75691 -11.64322 -11.56663 -11.55289 -11.37998 -11.24156 -10.61631 -10.53702 -10.45269 -10.31204 -9.97078 -8.98801 -8.31303 -5.29698 -0.42975 0.15872 1.55061 1.58964 1.63384 1.82169 1.91577 2.64222 2.74481 2.97274 3.16142 3.33216 3.51018 3.57163 3.61678 3.65368 3.80869 3.96447 4.00908 4.09725 4.22867 4.29124 4.32622 4.34422 4.44318 4.49544 4.52321 4.60446 4.63729 4.68979 4.71675 4.76959 4.83986 4.85317 4.89189 4.97168 4.99472 5.05717 5.07327 5.12017 5.16724 5.25280 5.26577 5.26873 5.31217 5.34133 5.39405 5.55079 5.65384 5.73745 6.29980 6.32069 6.76667 6.93190 7.02312 7.74703 8.32101 8.98366 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016311 B = 0.002562 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.240194 B =10924.548718 C =11354.519697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.046 4.046 3 C -0.141 4.141 4 C 0.119 3.881 5 C -0.102 4.102 6 N -0.480 5.480 7 C 0.066 3.934 8 C 0.563 3.437 9 O -0.575 6.575 10 N -0.690 5.690 11 C 0.151 3.849 12 C -0.068 4.068 13 C -0.099 4.099 14 C -0.111 4.111 15 C -0.120 4.120 16 C 0.155 3.845 17 H 0.026 0.974 18 N -0.611 5.611 19 C -0.338 4.338 20 H 0.060 0.940 21 C -0.083 4.083 22 N -0.944 5.944 23 Si 1.113 2.887 24 H -0.294 1.294 25 H -0.275 1.275 26 H -0.280 1.280 27 C 0.151 3.849 28 C -0.106 4.106 29 C -0.134 4.134 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.178 0.822 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.072 0.928 37 H 0.420 0.580 38 H 0.070 0.930 39 H 0.036 0.964 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.070 0.930 44 H 0.054 0.946 45 H 0.048 0.952 46 H 0.252 0.748 47 H -0.011 1.011 48 H 0.014 0.986 49 H 0.087 0.913 50 H 0.076 0.924 51 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.860 21.737 -13.442 29.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.053 4.053 3 C -0.161 4.161 4 C -0.022 4.022 5 C -0.159 4.159 6 N -0.194 5.194 7 C -0.071 4.071 8 C 0.349 3.651 9 O -0.454 6.454 10 N -0.341 5.341 11 C 0.027 3.973 12 C -0.069 4.069 13 C -0.137 4.137 14 C -0.148 4.148 15 C -0.160 4.160 16 C 0.048 3.952 17 H 0.044 0.956 18 N -0.335 5.335 19 C -0.467 4.467 20 H 0.078 0.922 21 C -0.279 4.279 22 N -0.587 5.587 23 Si 0.937 3.063 24 H -0.220 1.220 25 H -0.201 1.201 26 H -0.206 1.206 27 C 0.026 3.974 28 C -0.144 4.144 29 C -0.156 4.156 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.114 0.886 33 H 0.196 0.804 34 H 0.111 0.889 35 H 0.121 0.879 36 H 0.091 0.909 37 H 0.258 0.742 38 H 0.088 0.912 39 H 0.054 0.946 40 H 0.105 0.895 41 H 0.096 0.904 42 H 0.103 0.897 43 H 0.089 0.911 44 H 0.073 0.927 45 H 0.067 0.933 46 H 0.062 0.938 47 H 0.007 0.993 48 H 0.032 0.968 49 H 0.106 0.894 50 H 0.095 0.905 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -13.395 20.437 -12.074 27.256 hybrid contribution -1.529 -0.395 -0.708 1.730 sum -14.924 20.041 -12.782 28.067 Atomic orbital electron populations 1.20926 0.87217 1.04703 1.04244 1.20729 0.98805 0.91694 0.94119 1.22510 0.94296 1.00108 0.99175 1.21954 0.92474 0.93891 0.93862 1.20844 1.00190 0.90435 1.04399 1.67330 1.41694 0.97868 1.12476 1.20808 0.92074 0.91443 1.02772 1.18357 0.82596 0.88012 0.76138 1.90762 1.70741 1.31777 1.52138 1.45719 1.05377 1.10491 1.72506 1.21093 0.89714 0.85699 1.00808 1.22039 0.91890 0.95834 0.97095 1.22402 0.99556 0.98099 0.93622 1.22262 0.98483 0.97392 0.96695 1.22764 0.97753 0.99017 0.96472 1.21841 0.93075 0.94130 0.86129 0.95631 1.44689 1.55523 1.26296 1.07040 1.19929 1.20638 1.12547 0.93554 0.92173 1.27079 1.06418 1.01227 0.93137 1.70909 1.02424 1.47625 1.37775 0.82888 0.72141 0.76178 0.75065 1.22028 1.20098 1.20614 1.21111 0.94879 0.88403 0.93057 1.22476 1.01018 0.96474 0.94393 1.22093 0.93348 1.00646 0.99484 0.88969 0.90861 0.88554 0.80443 0.88891 0.87947 0.90872 0.74201 0.91167 0.94561 0.89517 0.90428 0.89664 0.91109 0.92700 0.93329 0.93797 0.99303 0.96796 0.89403 0.90547 0.84419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.06 71.24 0.72 -0.22 16 2 C -0.05 -0.69 5.91 -19.69 -0.12 -0.81 16 3 C -0.14 -1.73 9.45 22.44 0.21 -1.52 16 4 C 0.12 1.93 6.78 42.68 0.29 2.21 16 5 C -0.10 -0.93 10.17 71.23 0.72 -0.21 16 6 N -0.48 -11.04 9.45 -173.09 -1.64 -12.67 16 7 C 0.07 1.77 6.75 41.91 0.28 2.05 16 8 C 0.56 18.39 7.81 86.88 0.68 19.07 16 9 O -0.57 -22.74 16.32 -3.76 -0.06 -22.80 16 10 N -0.69 -20.63 4.68 -465.65 -2.18 -22.81 16 11 C 0.15 5.21 4.50 86.38 0.39 5.59 16 12 C -0.07 -2.25 0.55 -50.64 -0.03 -2.27 16 13 C -0.10 -2.46 5.70 31.74 0.18 -2.28 16 14 C -0.11 -2.82 6.85 31.60 0.22 -2.61 16 15 C -0.12 -4.31 6.21 31.85 0.20 -4.11 16 16 C 0.15 6.51 3.55 46.13 0.16 6.67 16 17 H 0.03 1.18 7.92 -2.39 -0.02 1.16 16 18 N -0.61 -31.92 2.91 -667.43 -1.94 -33.86 16 19 C -0.34 -19.75 9.65 84.03 0.81 -18.94 16 20 H 0.06 3.50 8.00 -2.91 -0.02 3.47 16 21 C -0.08 -4.96 5.07 84.86 0.43 -4.53 16 22 N -0.94 -60.95 12.96 21.65 0.28 -60.67 16 23 Si 1.11 53.27 30.02 68.60 2.06 55.33 16 24 H -0.29 -14.34 7.11 99.48 0.71 -13.64 16 25 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 26 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 27 C 0.15 7.50 5.43 86.75 0.47 7.97 16 28 C -0.11 -3.76 5.86 31.30 0.18 -3.58 16 29 C -0.13 -3.05 9.34 22.61 0.21 -2.84 16 30 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.07 0.66 8.10 -2.39 -0.02 0.64 16 32 H 0.10 0.39 8.10 -2.39 -0.02 0.37 16 33 H 0.18 0.74 8.06 -2.91 -0.02 0.72 16 34 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.10 0.41 8.08 -2.39 -0.02 0.39 16 36 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 37 H 0.42 10.86 7.04 -92.71 -0.65 10.20 16 38 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.09 1.88 7.32 -2.39 -0.02 1.86 16 41 H 0.08 1.71 7.52 -2.39 -0.02 1.69 16 42 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.05 2.14 8.06 -2.38 -0.02 2.12 16 45 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.25 16.71 6.10 -92.71 -0.57 16.15 16 47 H -0.01 -0.60 6.52 -2.39 -0.02 -0.61 16 48 H 0.01 0.75 8.08 -2.38 -0.02 0.73 16 49 H 0.09 2.80 7.41 -2.39 -0.02 2.78 16 50 H 0.08 2.51 7.24 -2.39 -0.02 2.49 16 51 H 0.14 3.26 7.64 -2.91 -0.02 3.24 16 Total: -1.00 -79.44 403.61 3.01 -76.43 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: 0.48 Total: 21.42 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: 6.01 Total: -0.36 kcal Atomic # 7 Polarization: -124.54 SS G_CDS: -5.47 Total: -130.02 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.06 Total: -22.80 kcal Atomic # 14 Polarization: 53.27 SS G_CDS: 2.06 Total: 55.33 kcal Total: -79.44 3.01 -76.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094454622.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.347 kcal (2) G-P(sol) polarization free energy of solvation -79.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds