Wall clock time and date at job start Wed Apr 1 2020 01:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38351 * 119.46223 * 2 1 4 4 C 1.38354 * 119.30519 * 179.97438 * 3 2 1 5 5 C 1.40032 * 118.28986 * 359.97438 * 4 3 2 6 6 C 1.47837 * 120.55925 * 179.97438 * 5 4 3 7 7 O 1.21551 * 119.99567 * 173.77436 * 6 5 4 8 8 N 1.34774 * 120.00349 * 353.49668 * 6 5 4 9 9 C 1.46496 * 120.00099 * 180.27422 * 8 6 5 10 10 C 1.52999 * 109.46970 * 180.02562 * 9 8 6 11 11 C 1.53524 * 111.15736 * 299.11147 * 10 9 8 12 12 C 1.54187 * 106.58746 * 240.87789 * 11 10 9 13 13 C 1.54742 * 104.34931 * 335.43749 * 12 11 10 14 14 C 1.54674 * 111.22744 * 180.02562 * 10 9 8 15 15 H 1.08998 * 112.40118 * 19.48768 * 14 10 9 16 16 N 1.47264 * 106.10048 * 256.40483 * 14 10 9 17 17 C 1.36930 * 126.51929 * 150.10920 * 16 14 10 18 18 H 1.07999 * 120.00307 * 0.02562 * 17 16 14 19 19 C 1.38814 * 119.99685 * 179.97438 * 17 16 14 20 20 N 1.31609 * 120.00293 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99742 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47253 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46797 * 120.00176 * 21 19 17 24 24 H 1.48498 * 109.47391 * 240.00064 * 21 19 17 25 25 C 1.47162 * 106.95840 * 330.07401 * 16 14 10 26 26 C 1.53672 * 111.17496 * 62.60210 * 10 9 8 27 27 C 1.39520 * 118.87526 * 0.27569 * 5 4 3 28 28 C 1.50708 * 119.71112 * 179.72107 * 27 5 4 29 29 N 1.31691 * 120.56906 * 359.45115 * 27 5 4 30 30 H 1.09001 * 109.47175 * 90.00071 * 1 2 3 31 31 H 1.09001 * 109.47329 * 210.00254 * 1 2 3 32 32 H 1.09001 * 109.47003 * 329.99802 * 1 2 3 33 33 H 1.07995 * 120.35045 * 0.02562 * 3 2 1 34 34 H 1.08000 * 120.85996 * 180.02562 * 4 3 2 35 35 H 0.96999 * 119.99902 * 0.27182 * 8 6 5 36 36 H 1.08994 * 109.47198 * 300.00212 * 9 8 6 37 37 H 1.09000 * 109.47035 * 60.00309 * 9 8 6 38 38 H 1.08997 * 110.03883 * 0.99074 * 11 10 9 39 39 H 1.08997 * 110.03833 * 122.44287 * 11 10 9 40 40 H 1.08995 * 110.79952 * 216.49768 * 12 11 10 41 41 H 1.09005 * 110.10346 * 94.02319 * 12 11 10 42 42 H 1.09001 * 110.64482 * 278.61476 * 13 12 11 43 43 H 1.09000 * 110.64798 * 155.53521 * 13 12 11 44 44 H 0.97000 * 120.00235 * 179.97438 * 20 19 17 45 45 H 1.09000 * 110.09368 * 150.06629 * 25 16 14 46 46 H 1.09004 * 110.09205 * 271.59887 * 25 16 14 47 47 H 1.08997 * 110.22963 * 241.05965 * 26 10 9 48 48 H 1.08988 * 110.23131 * 3.01734 * 26 10 9 49 49 H 1.09001 * 109.46711 * 83.42738 * 28 27 5 50 50 H 1.09004 * 109.46889 * 203.42213 * 28 27 5 51 51 H 1.08998 * 109.47331 * 323.42675 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5709 1.2008 0.0005 5 6 4.2312 -0.0341 0.0016 6 6 5.7083 -0.0967 0.0017 7 8 6.2711 -1.1679 0.1168 8 7 6.4307 1.0333 -0.1315 9 6 7.8943 0.9705 -0.1375 10 6 8.4646 2.3809 -0.3001 11 6 8.0137 3.0115 -1.6253 12 6 9.2946 3.3003 -2.4336 13 6 10.4032 3.4302 -1.3619 14 6 10.0111 2.3617 -0.3124 15 1 10.4125 1.3752 -0.5443 16 7 10.4360 2.8396 1.0142 17 6 11.5796 2.4869 1.6795 18 1 12.2735 1.7921 1.2300 19 6 11.8476 3.0233 2.9315 20 7 11.0028 3.8712 3.4787 21 14 13.4074 2.5416 3.8395 22 1 14.1839 1.5814 3.0148 23 1 14.2279 3.7536 4.0913 24 1 13.0508 1.9076 5.1341 25 6 9.3981 3.7689 1.4883 26 6 8.0708 3.2787 0.8832 27 6 3.4715 -1.2043 -0.0038 28 6 4.1627 -2.5435 -0.0091 29 7 2.1558 -1.1487 0.0011 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5139 33 1 1.6444 2.1381 0.0004 34 1 4.1275 2.1264 0.0010 35 1 5.9815 1.8881 -0.2235 36 1 8.2435 0.5440 0.8028 37 1 8.2278 0.3456 -0.9660 38 1 7.3642 2.3223 -2.1650 39 1 7.4891 3.9476 -1.4341 40 1 9.1963 4.2289 -2.9958 41 1 9.5089 2.4692 -3.1056 42 1 10.3947 4.4261 -0.9189 43 1 11.3803 3.2074 -1.7907 44 1 11.1899 4.2457 4.3537 45 1 9.3444 3.7467 2.5767 46 1 9.6160 4.7803 1.1451 47 1 7.4802 4.1255 0.5337 48 1 7.5092 2.7055 1.6207 49 1 4.4332 -2.8167 1.0108 50 1 3.4915 -3.2971 -0.4212 51 1 5.0630 -2.4854 -0.6207 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094585295.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:08 Heat of formation + Delta-G solvation = 16.447396 kcal Electronic energy + Delta-G solvation = -30594.243125 eV Core-core repulsion = 26686.565610 eV Total energy + Delta-G solvation = -3907.677516 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.98972 -39.81310 -38.69822 -35.00282 -34.04524 -33.72783 -33.05447 -31.59721 -30.34371 -29.25436 -28.40712 -27.09516 -26.83962 -24.32803 -23.71564 -23.13664 -22.21227 -20.85174 -20.51089 -19.61070 -18.61542 -17.68106 -17.09221 -16.76039 -15.66511 -15.56185 -15.38223 -15.13716 -14.77408 -14.67619 -14.35278 -13.93170 -13.65168 -13.56486 -13.51583 -13.40388 -13.25782 -12.73288 -12.57090 -12.54622 -12.42212 -12.13206 -12.02482 -11.88478 -11.66010 -11.22297 -11.01510 -10.82535 -10.66249 -10.55390 -10.30334 -10.12467 -10.09615 -10.05178 -10.01605 -9.86805 -9.64746 -9.52311 -9.44673 -9.15412 -8.80539 -8.68266 -6.89224 -5.65297 -3.10295 0.44774 0.94666 2.79677 3.16035 3.38714 3.44799 3.46778 3.59751 3.91570 4.34079 4.45452 4.46503 4.54516 4.74411 4.92604 4.94376 5.05424 5.09522 5.17886 5.22558 5.31991 5.47655 5.52181 5.52957 5.59225 5.64205 5.70503 5.72540 5.72576 5.88168 5.91465 5.94127 6.03760 6.07078 6.07381 6.13030 6.15259 6.29167 6.37426 6.41459 6.44720 6.47689 6.64305 6.66411 6.76555 6.86584 7.05591 7.48282 7.51665 7.62056 7.71046 7.84163 8.22090 8.39800 9.20062 9.81030 10.47489 11.35119 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014731 B = 0.002659 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.359433 B =10528.104320 C =11064.206389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.152 3.848 3 C -0.189 4.189 4 C -0.035 4.035 5 C -0.194 4.194 6 C 0.559 3.441 7 O -0.530 6.530 8 N -0.715 5.715 9 C 0.142 3.858 10 C -0.087 4.087 11 C -0.112 4.112 12 C -0.122 4.122 13 C -0.135 4.135 14 C 0.169 3.831 15 H 0.065 0.935 16 N -0.588 5.588 17 C -0.218 4.218 18 H 0.079 0.921 19 C -0.012 4.012 20 N -0.921 5.921 21 Si 0.914 3.086 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.137 3.863 26 C -0.130 4.130 27 C 0.194 3.806 28 C -0.109 4.109 29 N -0.492 5.492 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.397 0.603 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.069 0.931 43 H 0.055 0.945 44 H 0.251 0.749 45 H 0.121 0.879 46 H 0.006 0.994 47 H 0.053 0.947 48 H 0.055 0.945 49 H 0.084 0.916 50 H 0.067 0.933 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.821 -3.030 -10.347 21.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.014 3.986 3 C -0.209 4.209 4 C -0.061 4.061 5 C -0.199 4.199 6 C 0.345 3.655 7 O -0.408 6.408 8 N -0.366 5.366 9 C 0.019 3.981 10 C -0.089 4.089 11 C -0.149 4.149 12 C -0.160 4.160 13 C -0.175 4.175 14 C 0.059 3.941 15 H 0.083 0.917 16 N -0.308 5.308 17 C -0.346 4.346 18 H 0.097 0.903 19 C -0.207 4.207 20 N -0.570 5.570 21 Si 0.745 3.255 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.012 3.988 26 C -0.169 4.169 27 C 0.056 3.944 28 C -0.166 4.166 29 N -0.203 5.203 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.158 0.842 34 H 0.157 0.843 35 H 0.232 0.768 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.074 0.926 44 H 0.062 0.938 45 H 0.138 0.862 46 H 0.024 0.976 47 H 0.071 0.929 48 H 0.074 0.926 49 H 0.102 0.898 50 H 0.086 0.914 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -18.703 -4.528 -10.006 21.689 hybrid contribution 1.012 1.339 0.421 1.730 sum -17.691 -3.189 -9.585 20.372 Atomic orbital electron populations 1.20781 0.88518 1.03783 1.03338 1.21527 0.97247 0.88307 0.91548 1.21870 0.94489 0.99515 1.04996 1.21783 0.94725 0.97331 0.92290 1.20829 0.94749 0.94856 1.09515 1.17955 0.86067 0.84374 0.77093 1.90738 1.72281 1.28200 1.49600 1.45979 1.08086 1.08960 1.73596 1.21427 0.77271 0.96891 1.02461 1.22029 0.98248 0.93259 0.95361 1.22218 0.97638 0.99751 0.95334 1.22262 0.95736 1.00324 0.97711 1.23025 0.96901 1.01521 0.96091 1.21669 0.89605 0.95566 0.87253 0.91675 1.44574 1.21875 1.49944 1.14457 1.19150 0.95976 1.21249 0.98214 0.90342 1.24765 0.98944 0.99381 0.97611 1.69632 1.35854 1.34250 1.17220 0.86003 0.82295 0.77572 0.79676 1.20505 1.21824 1.21772 1.21861 0.83302 0.90525 1.03147 1.22715 1.00739 0.97431 0.96039 1.21524 0.88454 0.95521 0.88918 1.21059 1.00544 0.90622 1.04398 1.67498 1.09078 1.29061 1.14660 0.90037 0.90206 0.90399 0.84192 0.84320 0.76803 0.90629 0.91683 0.92381 0.92024 0.92562 0.92444 0.91237 0.92627 0.93781 0.86203 0.97633 0.92862 0.92632 0.89787 0.91402 0.87825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.67 10.16 36.00 0.37 -0.31 16 2 C 0.15 1.48 6.78 -82.51 -0.56 0.92 16 3 C -0.19 -1.62 9.72 -39.50 -0.38 -2.01 16 4 C -0.04 -0.34 9.63 -38.87 -0.37 -0.72 16 5 C -0.19 -2.42 5.89 -104.82 -0.62 -3.04 16 6 C 0.56 8.03 7.70 -12.33 -0.09 7.93 16 7 O -0.53 -9.08 13.38 5.32 0.07 -9.01 16 8 N -0.72 -9.41 4.79 -61.26 -0.29 -9.71 16 9 C 0.14 2.22 4.27 -4.04 -0.02 2.20 16 10 C -0.09 -1.39 0.65 -153.01 -0.10 -1.49 16 11 C -0.11 -1.47 5.62 -25.84 -0.15 -1.61 16 12 C -0.12 -1.67 6.83 -25.19 -0.17 -1.85 16 13 C -0.14 -2.36 6.37 -24.85 -0.16 -2.52 16 14 C 0.17 3.27 3.59 -65.67 -0.24 3.03 16 15 H 0.07 1.28 7.95 -51.93 -0.41 0.86 16 16 N -0.59 -14.19 2.98 -161.95 -0.48 -14.67 16 17 C -0.22 -5.86 10.33 -15.06 -0.16 -6.02 16 18 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 19 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 20 N -0.92 -26.25 10.06 55.49 0.56 -25.69 16 21 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 C 0.14 3.16 5.68 -3.22 -0.02 3.14 16 26 C -0.13 -2.29 5.82 -25.92 -0.15 -2.44 16 27 C 0.19 2.51 6.82 -82.17 -0.56 1.95 16 28 C -0.11 -1.34 8.87 36.01 0.32 -1.02 16 29 N -0.49 -6.03 10.17 -5.42 -0.06 -6.08 16 30 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.34 8.07 -51.93 -0.42 -0.08 16 33 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 34 H 0.14 1.03 6.57 -52.49 -0.34 0.68 16 35 H 0.40 4.31 6.01 -40.82 -0.25 4.06 16 36 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.06 0.69 7.47 -51.93 -0.39 0.30 16 39 H 0.06 0.76 7.10 -51.93 -0.37 0.40 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 1.35 7.28 -51.93 -0.38 0.98 16 43 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 45 H 0.12 3.20 5.46 -51.93 -0.28 2.91 16 46 H 0.01 0.14 7.71 -51.93 -0.40 -0.26 16 47 H 0.05 0.81 7.11 -51.93 -0.37 0.44 16 48 H 0.05 0.99 7.62 -51.94 -0.40 0.59 16 49 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 50 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 51 H 0.10 1.38 5.86 -51.93 -0.30 1.08 16 LS Contribution 394.17 15.07 5.94 5.94 Total: -1.00 -31.15 394.17 -10.52 -41.67 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -8.08 Total: 4.91 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -3.15 Total: -4.25 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: -0.27 Total: -56.15 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.07 Total: -9.01 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.15 -10.52 -41.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094585295.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.118 kcal (2) G-P(sol) polarization free energy of solvation -31.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds