Wall clock time and date at job start Wed Apr 1 2020 01:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38351 * 119.46223 * 2 1 4 4 C 1.38354 * 119.30519 * 179.97438 * 3 2 1 5 5 C 1.40032 * 118.28986 * 359.97438 * 4 3 2 6 6 C 1.47837 * 120.55925 * 179.97438 * 5 4 3 7 7 O 1.21551 * 119.99567 * 173.77436 * 6 5 4 8 8 N 1.34774 * 120.00349 * 353.49668 * 6 5 4 9 9 C 1.46496 * 120.00099 * 180.27422 * 8 6 5 10 10 C 1.52999 * 109.46970 * 180.02562 * 9 8 6 11 11 C 1.53524 * 111.15736 * 299.11147 * 10 9 8 12 12 C 1.54187 * 106.58746 * 240.87789 * 11 10 9 13 13 C 1.54742 * 104.34931 * 335.43749 * 12 11 10 14 14 C 1.54674 * 111.22744 * 180.02562 * 10 9 8 15 15 H 1.08998 * 112.40118 * 19.48768 * 14 10 9 16 16 N 1.47264 * 106.10048 * 256.40483 * 14 10 9 17 17 C 1.36930 * 126.51929 * 150.10920 * 16 14 10 18 18 H 1.07999 * 120.00307 * 0.02562 * 17 16 14 19 19 C 1.38814 * 119.99685 * 179.97438 * 17 16 14 20 20 N 1.31609 * 120.00293 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99742 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47253 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46797 * 120.00176 * 21 19 17 24 24 H 1.48498 * 109.47391 * 240.00064 * 21 19 17 25 25 C 1.47162 * 106.95840 * 330.07401 * 16 14 10 26 26 C 1.53672 * 111.17496 * 62.60210 * 10 9 8 27 27 C 1.39520 * 118.87526 * 0.27569 * 5 4 3 28 28 C 1.50708 * 119.71112 * 179.72107 * 27 5 4 29 29 N 1.31691 * 120.56906 * 359.45115 * 27 5 4 30 30 H 1.09001 * 109.47175 * 90.00071 * 1 2 3 31 31 H 1.09001 * 109.47329 * 210.00254 * 1 2 3 32 32 H 1.09001 * 109.47003 * 329.99802 * 1 2 3 33 33 H 1.07995 * 120.35045 * 0.02562 * 3 2 1 34 34 H 1.08000 * 120.85996 * 180.02562 * 4 3 2 35 35 H 0.96999 * 119.99902 * 0.27182 * 8 6 5 36 36 H 1.08994 * 109.47198 * 300.00212 * 9 8 6 37 37 H 1.09000 * 109.47035 * 60.00309 * 9 8 6 38 38 H 1.08997 * 110.03883 * 0.99074 * 11 10 9 39 39 H 1.08997 * 110.03833 * 122.44287 * 11 10 9 40 40 H 1.08995 * 110.79952 * 216.49768 * 12 11 10 41 41 H 1.09005 * 110.10346 * 94.02319 * 12 11 10 42 42 H 1.09001 * 110.64482 * 278.61476 * 13 12 11 43 43 H 1.09000 * 110.64798 * 155.53521 * 13 12 11 44 44 H 0.97000 * 120.00235 * 179.97438 * 20 19 17 45 45 H 1.09000 * 110.09368 * 150.06629 * 25 16 14 46 46 H 1.09004 * 110.09205 * 271.59887 * 25 16 14 47 47 H 1.08997 * 110.22963 * 241.05965 * 26 10 9 48 48 H 1.08988 * 110.23131 * 3.01734 * 26 10 9 49 49 H 1.09001 * 109.46711 * 83.42738 * 28 27 5 50 50 H 1.09004 * 109.46889 * 203.42213 * 28 27 5 51 51 H 1.08998 * 109.47331 * 323.42675 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5709 1.2008 0.0005 5 6 4.2312 -0.0341 0.0016 6 6 5.7083 -0.0967 0.0017 7 8 6.2711 -1.1679 0.1168 8 7 6.4307 1.0333 -0.1315 9 6 7.8943 0.9705 -0.1375 10 6 8.4646 2.3809 -0.3001 11 6 8.0137 3.0115 -1.6253 12 6 9.2946 3.3003 -2.4336 13 6 10.4032 3.4302 -1.3619 14 6 10.0111 2.3617 -0.3124 15 1 10.4125 1.3752 -0.5443 16 7 10.4360 2.8396 1.0142 17 6 11.5796 2.4869 1.6795 18 1 12.2735 1.7921 1.2300 19 6 11.8476 3.0233 2.9315 20 7 11.0028 3.8712 3.4787 21 14 13.4074 2.5416 3.8395 22 1 14.1839 1.5814 3.0148 23 1 14.2279 3.7536 4.0913 24 1 13.0508 1.9076 5.1341 25 6 9.3981 3.7689 1.4883 26 6 8.0708 3.2787 0.8832 27 6 3.4715 -1.2043 -0.0038 28 6 4.1627 -2.5435 -0.0091 29 7 2.1558 -1.1487 0.0011 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5139 33 1 1.6444 2.1381 0.0004 34 1 4.1275 2.1264 0.0010 35 1 5.9815 1.8881 -0.2235 36 1 8.2435 0.5440 0.8028 37 1 8.2278 0.3456 -0.9660 38 1 7.3642 2.3223 -2.1650 39 1 7.4891 3.9476 -1.4341 40 1 9.1963 4.2289 -2.9958 41 1 9.5089 2.4692 -3.1056 42 1 10.3947 4.4261 -0.9189 43 1 11.3803 3.2074 -1.7907 44 1 11.1899 4.2457 4.3537 45 1 9.3444 3.7467 2.5767 46 1 9.6160 4.7803 1.1451 47 1 7.4802 4.1255 0.5337 48 1 7.5092 2.7055 1.6207 49 1 4.4332 -2.8167 1.0108 50 1 3.4915 -3.2971 -0.4212 51 1 5.0630 -2.4854 -0.6207 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094585295.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:07 Heat of formation + Delta-G solvation = -1.790916 kcal Electronic energy + Delta-G solvation = -30595.033998 eV Core-core repulsion = 26686.565610 eV Total energy + Delta-G solvation = -3908.468388 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.92446 -41.09426 -39.85429 -36.41840 -35.52615 -34.52295 -33.93653 -33.31042 -31.89839 -29.98916 -29.74459 -28.45231 -28.08365 -25.71944 -25.37819 -23.91863 -23.09652 -22.14302 -21.91538 -21.01326 -19.87918 -19.08871 -18.57412 -17.77774 -16.95162 -16.63610 -16.51483 -16.32475 -16.11697 -15.79597 -15.50500 -15.31026 -15.12543 -14.91807 -14.42476 -14.31305 -14.20116 -14.07321 -13.89023 -13.58138 -13.36374 -13.26521 -13.07621 -12.88795 -12.86806 -12.85369 -12.79514 -12.50154 -12.14988 -11.98161 -11.83026 -11.59925 -11.57494 -11.42933 -11.33330 -11.05497 -11.00103 -10.90002 -10.70547 -10.43997 -10.18775 -9.76303 -8.85550 -7.72803 -5.18891 -0.38557 0.18937 1.44770 1.45667 1.55230 1.79794 2.05954 2.49227 2.73996 3.17258 3.31306 3.51905 3.62225 3.65846 3.72954 3.75430 3.77400 3.97710 4.05390 4.31713 4.35527 4.41402 4.48545 4.56042 4.56593 4.64254 4.65230 4.65507 4.71603 4.76911 4.79627 4.82638 4.90760 4.96248 4.97702 5.05921 5.09486 5.14212 5.16562 5.18197 5.24941 5.29312 5.40850 5.46299 5.50556 5.52190 5.60355 5.66690 5.70512 5.90276 6.41238 6.48078 6.90897 7.14334 7.15537 7.82613 8.48572 9.25084 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014731 B = 0.002659 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.359433 B =10528.104320 C =11064.206389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.143 3.857 3 C -0.179 4.179 4 C -0.032 4.032 5 C -0.213 4.213 6 C 0.558 3.442 7 O -0.566 6.566 8 N -0.702 5.702 9 C 0.155 3.845 10 C -0.072 4.072 11 C -0.103 4.103 12 C -0.112 4.112 13 C -0.131 4.131 14 C 0.153 3.847 15 H 0.057 0.943 16 N -0.610 5.610 17 C -0.226 4.226 18 H 0.077 0.923 19 C -0.068 4.068 20 N -0.946 5.946 21 Si 0.973 3.027 22 H -0.269 1.269 23 H -0.293 1.293 24 H -0.294 1.294 25 C 0.140 3.860 26 C -0.116 4.116 27 C 0.174 3.826 28 C -0.103 4.103 29 N -0.515 5.515 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.179 0.821 34 H 0.166 0.834 35 H 0.412 0.588 36 H 0.036 0.964 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.045 0.955 43 H 0.050 0.950 44 H 0.245 0.755 45 H 0.082 0.918 46 H -0.015 1.015 47 H 0.087 0.913 48 H 0.051 0.949 49 H 0.073 0.927 50 H 0.076 0.924 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.524 -1.802 -12.439 24.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.005 3.995 3 C -0.198 4.198 4 C -0.058 4.058 5 C -0.218 4.218 6 C 0.346 3.654 7 O -0.447 6.447 8 N -0.354 5.354 9 C 0.031 3.969 10 C -0.074 4.074 11 C -0.141 4.141 12 C -0.150 4.150 13 C -0.171 4.171 14 C 0.046 3.954 15 H 0.075 0.925 16 N -0.331 5.331 17 C -0.355 4.355 18 H 0.095 0.905 19 C -0.260 4.260 20 N -0.597 5.597 21 Si 0.802 3.198 22 H -0.194 1.194 23 H -0.220 1.220 24 H -0.222 1.222 25 C 0.014 3.986 26 C -0.155 4.155 27 C 0.036 3.964 28 C -0.160 4.160 29 N -0.226 5.226 30 H 0.114 0.886 31 H 0.092 0.908 32 H 0.122 0.878 33 H 0.197 0.803 34 H 0.184 0.816 35 H 0.250 0.750 36 H 0.055 0.945 37 H 0.086 0.914 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.055 0.945 45 H 0.100 0.900 46 H 0.003 0.997 47 H 0.106 0.894 48 H 0.070 0.930 49 H 0.092 0.908 50 H 0.095 0.905 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -21.432 -3.290 -12.144 24.852 hybrid contribution 1.799 0.950 1.062 2.295 sum -19.633 -2.339 -11.082 22.666 Atomic orbital electron populations 1.20900 0.86060 1.04774 1.04476 1.22228 0.98963 0.88167 0.90152 1.22301 0.94076 1.00583 1.02886 1.22120 0.95550 0.97050 0.91057 1.20687 0.93241 0.96139 1.11747 1.18316 0.87057 0.83904 0.76161 1.90725 1.73197 1.29602 1.51208 1.45732 1.06820 1.09542 1.73298 1.21101 0.78801 0.96443 1.00573 1.21860 0.95555 0.93260 0.96704 1.22203 0.97824 1.00932 0.93121 1.22224 0.93924 1.02089 0.96718 1.22860 0.98465 0.99111 0.96635 1.21987 0.92117 0.95644 0.85687 0.92525 1.44800 1.21562 1.50318 1.16427 1.19456 0.96977 1.20599 0.98505 0.90485 1.25511 1.01827 1.00087 0.98617 1.69900 1.37207 1.35417 1.17127 0.85073 0.79274 0.77161 0.78257 1.19370 1.21995 1.22173 1.21630 0.85959 0.89809 1.01198 1.22565 0.97841 0.98734 0.96355 1.21558 0.89123 0.95672 0.90069 1.20926 1.00164 0.91441 1.03511 1.67517 1.08671 1.30744 1.15654 0.88645 0.90843 0.87813 0.80326 0.81648 0.75039 0.94518 0.91394 0.89943 0.90034 0.90391 0.91028 0.93599 0.93137 0.94515 0.90026 0.99745 0.89413 0.92999 0.90802 0.90474 0.89325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.16 71.23 0.72 -0.24 16 2 C 0.14 2.38 6.78 42.57 0.29 2.67 16 3 C -0.18 -2.33 9.72 22.32 0.22 -2.12 16 4 C -0.03 -0.51 9.63 22.73 0.22 -0.29 16 5 C -0.21 -5.03 5.89 -19.99 -0.12 -5.15 16 6 C 0.56 15.72 7.70 86.78 0.67 16.39 16 7 O -0.57 -20.00 13.38 -3.88 -0.05 -20.05 16 8 N -0.70 -17.22 4.79 -466.00 -2.23 -19.46 16 9 C 0.15 4.73 4.27 86.38 0.37 5.09 16 10 C -0.07 -2.18 0.65 -51.21 -0.03 -2.21 16 11 C -0.10 -2.28 5.62 31.17 0.18 -2.10 16 12 C -0.11 -2.65 6.83 31.59 0.22 -2.44 16 13 C -0.13 -4.44 6.37 31.81 0.20 -4.24 16 14 C 0.15 5.96 3.59 46.04 0.17 6.12 16 15 H 0.06 2.26 7.95 -2.39 -0.02 2.24 16 16 N -0.61 -30.38 2.98 -666.28 -1.99 -32.36 16 17 C -0.23 -12.61 10.33 84.04 0.87 -11.74 16 18 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 19 C -0.07 -3.89 5.49 84.86 0.47 -3.42 16 20 N -0.95 -56.21 10.06 21.65 0.22 -55.99 16 21 Si 0.97 46.39 29.55 68.60 2.03 48.42 16 22 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 23 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 24 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 25 C 0.14 6.63 5.68 86.55 0.49 7.12 16 26 C -0.12 -3.95 5.82 31.12 0.18 -3.77 16 27 C 0.17 4.43 6.82 42.89 0.29 4.73 16 28 C -0.10 -2.64 8.87 71.24 0.63 -2.00 16 29 N -0.51 -12.00 10.17 -171.06 -1.74 -13.74 16 30 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.10 0.43 8.07 -2.39 -0.02 0.41 16 33 H 0.18 0.92 8.06 -2.91 -0.02 0.90 16 34 H 0.17 1.65 6.57 -2.91 -0.02 1.63 16 35 H 0.41 7.48 6.01 -92.71 -0.56 6.93 16 36 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.07 2.05 8.14 -2.39 -0.02 2.04 16 38 H 0.08 1.51 7.47 -2.39 -0.02 1.49 16 39 H 0.08 1.56 7.10 -2.39 -0.02 1.54 16 40 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 42 H 0.05 1.77 7.28 -2.39 -0.02 1.76 16 43 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.24 14.18 8.31 -92.71 -0.77 13.41 16 45 H 0.08 4.56 5.46 -2.39 -0.01 4.55 16 46 H -0.02 -0.78 7.71 -2.39 -0.02 -0.79 16 47 H 0.09 2.39 7.11 -2.39 -0.02 2.37 16 48 H 0.05 1.80 7.62 -2.39 -0.02 1.78 16 49 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 50 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 51 H 0.09 2.50 5.86 -2.39 -0.01 2.49 16 Total: -1.00 -73.38 394.17 2.64 -70.75 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 0.38 Total: 20.04 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: 6.02 Total: 2.40 kcal Atomic # 7 Polarization: -115.81 SS G_CDS: -5.74 Total: -121.55 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.05 Total: -20.05 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -73.38 2.64 -70.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094585295.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.956 kcal (2) G-P(sol) polarization free energy of solvation -73.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds