Wall clock time and date at job start Wed Apr 1 2020 02:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38679 * 120.78542 * 2 1 4 4 C 1.38177 * 119.15859 * 179.97438 * 3 2 1 5 5 N 1.31880 * 120.77029 * 359.97232 * 4 3 2 6 6 C 1.31860 * 121.72361 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.61799 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.47187 * 105.00354 * 7 6 5 9 9 C 1.52998 * 109.47302 * 225.00248 * 7 6 5 10 10 C 1.50705 * 109.47035 * 345.00418 * 7 6 5 11 11 O 1.21280 * 119.99886 * 359.97438 * 10 7 6 12 12 N 1.34777 * 119.99610 * 179.97438 * 10 7 6 13 13 C 1.46501 * 119.99554 * 179.97438 * 12 10 7 14 14 H 1.08998 * 110.56214 * 34.30380 * 13 12 10 15 15 C 1.54849 * 110.62838 * 271.39712 * 13 12 10 16 16 C 1.55844 * 103.44709 * 241.51248 * 15 13 12 17 17 H 1.09004 * 115.56126 * 158.81432 * 16 15 13 18 18 C 1.55846 * 105.06592 * 288.17695 * 16 15 13 19 19 C 1.55154 * 103.50031 * 71.74058 * 18 16 15 20 20 C 1.55838 * 103.41822 * 0.06182 * 19 18 16 21 21 H 1.08999 * 116.12765 * 159.22956 * 20 19 18 22 22 N 1.50232 * 101.05089 * 32.93997 * 16 15 13 23 23 C 1.36938 * 130.84251 * 126.01706 * 22 16 15 24 24 H 1.08000 * 120.00058 * 185.40101 * 23 22 16 25 25 C 1.38810 * 119.99749 * 5.39316 * 23 22 16 26 26 N 1.31623 * 119.99962 * 9.29296 * 25 23 22 27 27 Si 1.86799 * 119.99952 * 189.29312 * 25 23 22 28 28 H 1.48505 * 109.46998 * 94.04908 * 27 25 23 29 29 H 1.48503 * 109.47030 * 214.04596 * 27 25 23 30 30 H 1.48501 * 109.47337 * 334.04644 * 27 25 23 31 31 C 1.38223 * 120.76245 * 0.02562 * 6 5 4 32 32 H 1.09001 * 109.47045 * 90.00369 * 1 2 3 33 33 H 1.09002 * 109.47231 * 210.00275 * 1 2 3 34 34 H 1.08997 * 109.47257 * 330.00722 * 1 2 3 35 35 H 1.07999 * 120.42034 * 0.26373 * 3 2 1 36 36 H 1.08010 * 119.61561 * 179.97438 * 4 3 2 37 37 H 1.09002 * 109.47306 * 59.99741 * 8 7 6 38 38 H 1.08999 * 109.47518 * 180.02562 * 8 7 6 39 39 H 1.08997 * 109.46888 * 300.00142 * 8 7 6 40 40 H 1.09001 * 109.46539 * 59.99994 * 9 7 6 41 41 H 1.09001 * 109.47412 * 179.97438 * 9 7 6 42 42 H 1.08998 * 109.47227 * 300.00287 * 9 7 6 43 43 H 0.97001 * 120.00629 * 359.97438 * 12 10 7 44 44 H 1.08997 * 110.62716 * 0.02562 * 15 13 12 45 45 H 1.09001 * 110.62426 * 123.02052 * 15 13 12 46 46 H 1.09001 * 110.62884 * 190.31742 * 18 16 15 47 47 H 1.09005 * 110.62094 * 313.33500 * 18 16 15 48 48 H 1.09003 * 110.57388 * 241.61189 * 19 18 16 49 49 H 1.09003 * 110.84964 * 118.64247 * 19 18 16 50 50 H 0.97001 * 119.99676 * 180.02562 * 26 25 23 51 51 H 1.08001 * 120.42118 * 179.97438 * 31 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1914 0.0000 4 6 3.5980 1.1522 0.0005 5 7 4.2403 0.0003 0.0016 6 6 3.5983 -1.1515 0.0017 7 6 4.3801 -2.4398 0.0035 8 6 4.3238 -3.0686 1.3972 9 6 3.7739 -3.4057 -1.0165 10 6 5.8145 -2.1576 -0.3627 11 8 6.1670 -1.0221 -0.6021 12 7 6.7054 -3.1670 -0.4242 13 6 8.0996 -2.8927 -0.7807 14 1 8.4104 -1.9228 -0.3923 15 6 8.2921 -2.9526 -2.3160 16 6 9.3161 -4.1116 -2.5079 17 1 9.3306 -4.5673 -3.4980 18 6 10.6730 -3.5423 -1.9946 19 6 10.4808 -3.4797 -0.4563 20 6 9.0342 -4.0214 -0.2502 21 1 8.7996 -4.3969 0.7458 22 7 8.9378 -5.0210 -1.3735 23 6 8.6070 -6.3498 -1.3630 24 1 8.2763 -6.8167 -0.4471 25 6 8.6966 -7.0965 -2.5297 26 7 9.2691 -6.5825 -3.5977 27 14 8.0049 -8.8308 -2.5841 28 1 6.6169 -8.7938 -3.1107 29 1 8.8483 -9.6726 -3.4703 30 1 7.9996 -9.4048 -1.2145 31 6 2.2167 -1.1908 0.0001 32 1 -0.3633 -0.0001 -1.0277 33 1 -0.3634 -0.8900 0.5139 34 1 -0.3633 0.8900 0.5137 35 1 1.6966 2.1378 0.0043 36 1 4.1582 2.0756 0.0001 37 1 3.2864 -3.2727 1.6621 38 1 4.8896 -4.0002 1.3987 39 1 4.7557 -2.3805 2.1239 40 1 3.8141 -2.9577 -2.0094 41 1 4.3396 -4.3374 -1.0156 42 1 2.7365 -3.6098 -0.7517 43 1 6.4235 -4.0751 -0.2324 44 1 7.3501 -3.1861 -2.8122 45 1 8.7008 -2.0134 -2.6887 46 1 11.4930 -4.2124 -2.2530 47 1 10.8486 -2.5453 -2.3988 48 1 10.5601 -2.4519 -0.1019 49 1 11.2053 -4.1165 0.0515 50 1 9.3313 -7.1042 -4.4131 51 1 1.6965 -2.1373 -0.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097324051.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:55 Heat of formation + Delta-G solvation = 49.423747 kcal Electronic energy + Delta-G solvation = -31198.138334 eV Core-core repulsion = 27291.890780 eV Total energy + Delta-G solvation = -3906.247554 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.80500 -39.51706 -38.29730 -35.27554 -34.02630 -33.42279 -32.44764 -30.26740 -29.05779 -28.72871 -28.01550 -27.52937 -27.33082 -24.55586 -24.13602 -22.48710 -22.24335 -20.65726 -19.74971 -19.02250 -18.53149 -17.00184 -16.90753 -16.47495 -15.83133 -15.59135 -15.11149 -14.78826 -14.75857 -14.23909 -14.18032 -13.89691 -13.87634 -13.41875 -13.17326 -12.94504 -12.82760 -12.68584 -12.47670 -12.24224 -12.10076 -11.97055 -11.85343 -11.74408 -11.31900 -11.13612 -11.10698 -11.03726 -10.92065 -10.86357 -10.43050 -10.29956 -10.06830 -9.88535 -9.69547 -9.49533 -9.32698 -9.13527 -8.99382 -8.86115 -8.54295 -8.25324 -6.90725 -5.74964 -3.10430 1.08367 1.27971 3.22245 3.36312 3.41275 3.44154 3.66480 3.83854 4.11306 4.42120 4.50812 4.60922 4.84906 4.95461 5.04791 5.06247 5.12434 5.17612 5.25162 5.26012 5.37313 5.42737 5.51417 5.59096 5.68825 5.71066 5.72720 5.73499 5.77937 5.81945 5.92638 6.02214 6.05433 6.12271 6.15736 6.19034 6.21680 6.25112 6.38169 6.48926 6.56099 6.67071 6.69413 6.83337 6.88605 7.01530 7.26102 7.40228 7.50013 7.81160 8.14321 8.16651 8.22824 8.89761 9.07303 9.71601 10.55126 11.36078 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014883 B = 0.003128 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.928102 B = 8947.990462 C =10106.522086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.051 4.051 3 C -0.183 4.183 4 C 0.097 3.903 5 N -0.427 5.427 6 C 0.148 3.852 7 C -0.035 4.035 8 C -0.135 4.135 9 C -0.140 4.140 10 C 0.514 3.486 11 O -0.504 6.504 12 N -0.711 5.711 13 C 0.135 3.865 14 H 0.077 0.923 15 C -0.144 4.144 16 C 0.158 3.842 17 H 0.144 0.856 18 C -0.134 4.134 19 C -0.127 4.127 20 C 0.124 3.876 21 H 0.087 0.913 22 N -0.590 5.590 23 C -0.214 4.214 24 H 0.077 0.923 25 C -0.010 4.010 26 N -0.916 5.916 27 Si 0.911 3.089 28 H -0.290 1.290 29 H -0.292 1.292 30 H -0.282 1.282 31 C -0.169 4.169 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.129 0.871 36 H 0.152 0.848 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.398 0.602 44 H 0.056 0.944 45 H 0.052 0.948 46 H 0.056 0.944 47 H 0.046 0.954 48 H 0.050 0.950 49 H 0.056 0.944 50 H 0.253 0.747 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.479 11.125 8.177 20.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.059 4.059 3 C -0.203 4.203 4 C -0.060 4.060 5 N -0.135 5.135 6 C 0.009 3.991 7 C -0.039 4.039 8 C -0.193 4.193 9 C -0.198 4.198 10 C 0.298 3.702 11 O -0.377 6.377 12 N -0.362 5.362 13 C 0.028 3.972 14 H 0.095 0.905 15 C -0.184 4.184 16 C 0.051 3.949 17 H 0.161 0.839 18 C -0.174 4.174 19 C -0.167 4.167 20 C 0.016 3.984 21 H 0.105 0.895 22 N -0.311 5.311 23 C -0.342 4.342 24 H 0.095 0.905 25 C -0.206 4.206 26 N -0.563 5.563 27 Si 0.742 3.258 28 H -0.218 1.218 29 H -0.219 1.219 30 H -0.208 1.208 31 C -0.189 4.189 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.147 0.853 36 H 0.169 0.831 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.232 0.768 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.065 0.935 48 H 0.069 0.931 49 H 0.075 0.925 50 H 0.063 0.937 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -13.321 11.655 7.864 19.368 hybrid contribution -1.387 -1.246 -0.034 1.865 sum -14.708 10.409 7.830 19.647 Atomic orbital electron populations 1.20791 0.90476 1.03048 1.02713 1.20227 0.96491 0.92969 0.96222 1.22057 0.95934 0.98358 1.03936 1.22930 0.91350 0.96765 0.94952 1.68085 1.39346 0.97222 1.08878 1.20737 0.90192 0.93120 0.95007 1.19720 0.93506 0.92512 0.98203 1.21839 1.02807 1.00980 0.93628 1.21929 1.01080 0.98678 0.98120 1.19981 0.86413 0.85527 0.78303 1.90751 1.78868 1.20737 1.47331 1.46001 1.09817 1.10094 1.70265 1.22521 0.80207 0.98492 0.95931 0.90509 1.23455 1.01003 0.99170 0.94789 1.23530 0.88741 0.86600 0.95982 0.83912 1.23062 1.00886 0.98723 0.94698 1.22900 0.97675 0.98721 0.97438 1.23247 0.93027 0.89352 0.92808 0.89505 1.46637 1.78608 1.04914 1.00972 1.18988 1.36431 0.83199 0.95551 0.90478 1.24701 1.01312 0.98160 0.96440 1.69623 1.47415 1.36720 1.02591 0.86109 0.78449 0.83988 0.77246 1.21771 1.21884 1.20753 1.21756 0.94659 0.98678 1.03804 0.90715 0.91182 0.91235 0.85326 0.83084 0.91560 0.90927 0.91940 0.91883 0.90579 0.91455 0.76776 0.92497 0.92925 0.92481 0.93510 0.93105 0.92548 0.93656 0.85000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.06 36.01 0.36 -0.40 16 2 C -0.05 -0.52 5.92 -104.32 -0.62 -1.13 16 3 C -0.18 -1.89 9.82 -39.44 -0.39 -2.28 16 4 C 0.10 1.25 11.18 -17.55 -0.20 1.06 16 5 N -0.43 -6.87 7.29 -9.47 -0.07 -6.94 16 6 C 0.15 2.10 5.53 -82.59 -0.46 1.64 16 7 C -0.04 -0.48 0.72 -156.81 -0.11 -0.59 16 8 C -0.13 -1.50 8.30 37.16 0.31 -1.19 16 9 C -0.14 -1.70 7.98 37.16 0.30 -1.40 16 10 C 0.51 8.92 6.45 -10.98 -0.07 8.85 16 11 O -0.50 -10.44 13.70 5.56 0.08 -10.36 16 12 N -0.71 -12.26 4.87 -51.40 -0.25 -12.51 16 13 C 0.13 2.55 2.75 -65.44 -0.18 2.37 16 14 H 0.08 1.49 7.29 -51.93 -0.38 1.12 16 15 C -0.14 -2.98 6.23 -24.24 -0.15 -3.13 16 16 C 0.16 3.62 4.67 -62.80 -0.29 3.33 16 17 H 0.14 3.76 5.73 -51.93 -0.30 3.46 16 18 C -0.13 -2.73 6.45 -24.07 -0.16 -2.89 16 19 C -0.13 -2.37 6.46 -24.08 -0.16 -2.53 16 20 C 0.12 2.43 5.07 -62.55 -0.32 2.11 16 21 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 22 N -0.59 -13.89 2.99 -145.48 -0.44 -14.33 16 23 C -0.21 -5.53 10.56 -15.06 -0.16 -5.69 16 24 H 0.08 1.92 7.85 -52.49 -0.41 1.51 16 25 C -0.01 -0.27 5.47 -17.43 -0.10 -0.36 16 26 N -0.92 -25.70 10.64 55.49 0.59 -25.11 16 27 Si 0.91 21.21 29.56 -169.99 -5.03 16.18 16 28 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 29 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 30 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 31 C -0.17 -1.91 8.79 -39.45 -0.35 -2.25 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.40 8.10 -51.93 -0.42 -0.02 16 34 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16 35 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 36 H 0.15 1.62 8.06 -52.48 -0.42 1.20 16 37 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 38 H 0.07 0.76 7.56 -51.93 -0.39 0.37 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.08 0.93 7.57 -51.93 -0.39 0.54 16 42 H 0.07 0.63 6.70 -51.93 -0.35 0.28 16 43 H 0.40 6.56 7.47 -40.82 -0.31 6.25 16 44 H 0.06 1.26 7.98 -51.93 -0.41 0.84 16 45 H 0.05 1.04 7.82 -51.93 -0.41 0.63 16 46 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 47 H 0.05 0.86 7.82 -51.93 -0.41 0.45 16 48 H 0.05 0.84 7.82 -51.93 -0.41 0.44 16 49 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 50 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 51 H 0.13 1.18 6.73 -52.49 -0.35 0.83 16 LS Contribution 398.69 15.07 6.01 6.01 Total: -1.00 -31.76 398.69 -10.12 -41.88 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -8.29 Total: 9.68 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -2.73 Total: -4.49 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: -0.16 Total: -58.90 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.08 Total: -10.36 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.76 -10.12 -41.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097324051.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.308 kcal (2) G-P(sol) polarization free energy of solvation -31.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds