Wall clock time and date at job start Wed Apr 1 2020 02:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38674 * 120.78581 * 2 1 4 4 C 1.38189 * 119.15964 * 180.27031 * 3 2 1 5 5 N 1.31888 * 120.76396 * 359.70613 * 4 3 2 6 6 C 1.31854 * 121.72732 * 0.02562 * 5 4 3 7 7 C 1.38228 * 120.76309 * 359.97438 * 6 5 4 8 8 C 1.50699 * 120.41892 * 180.02562 * 7 6 5 9 9 C 1.50706 * 109.46817 * 264.99972 * 8 7 6 10 10 O 1.21274 * 120.00042 * 359.72211 * 9 8 7 11 11 N 1.34777 * 119.99766 * 179.97438 * 9 8 7 12 12 C 1.46496 * 120.00266 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47425 * 180.02562 * 12 11 9 14 14 C 1.53516 * 111.15538 * 299.11334 * 13 12 11 15 15 C 1.54184 * 106.58898 * 240.87917 * 14 13 12 16 16 C 1.54739 * 104.35005 * 335.43384 * 15 14 13 17 17 C 1.54665 * 111.22675 * 180.02562 * 13 12 11 18 18 H 1.09005 * 112.40732 * 19.49139 * 17 13 12 19 19 N 1.47252 * 106.10191 * 256.40386 * 17 13 12 20 20 C 1.36944 * 126.52357 * 150.11390 * 19 17 13 21 21 H 1.08000 * 119.99499 * 359.97438 * 20 19 17 22 22 C 1.38807 * 120.00173 * 180.02562 * 20 19 17 23 23 N 1.31617 * 120.00320 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99822 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46824 * 89.99659 * 24 22 20 26 26 H 1.48498 * 109.46986 * 209.99680 * 24 22 20 27 27 H 1.48493 * 109.46974 * 329.99869 * 24 22 20 28 28 C 1.47157 * 106.96166 * 330.07726 * 19 17 13 29 29 C 1.53672 * 111.17489 * 62.60264 * 13 12 11 30 30 H 1.08992 * 109.47449 * 270.29321 * 1 2 3 31 31 H 1.09006 * 109.47240 * 30.29153 * 1 2 3 32 32 H 1.09005 * 109.46872 * 150.28787 * 1 2 3 33 33 H 1.07995 * 120.42524 * 0.02562 * 3 2 1 34 34 H 1.07999 * 119.61591 * 179.72749 * 4 3 2 35 35 H 1.07994 * 119.61727 * 180.02562 * 6 5 4 36 36 H 1.09000 * 109.47247 * 145.00035 * 8 7 6 37 37 H 1.09001 * 109.47358 * 24.99461 * 8 7 6 38 38 H 0.96999 * 120.00043 * 0.02562 * 11 9 8 39 39 H 1.09004 * 109.47212 * 300.00463 * 12 11 9 40 40 H 1.09000 * 109.46684 * 60.00307 * 12 11 9 41 41 H 1.09004 * 110.04247 * 0.98703 * 14 13 12 42 42 H 1.08998 * 110.03999 * 122.43512 * 14 13 12 43 43 H 1.09001 * 110.79859 * 216.50310 * 15 14 13 44 44 H 1.08999 * 110.10982 * 94.02461 * 15 14 13 45 45 H 1.09000 * 110.64892 * 278.62549 * 16 15 14 46 46 H 1.08992 * 110.65122 * 155.53347 * 16 15 14 47 47 H 0.96997 * 120.00166 * 180.02562 * 23 22 20 48 48 H 1.09000 * 110.09675 * 150.06655 * 28 19 17 49 49 H 1.09004 * 110.09241 * 271.59931 * 28 19 17 50 50 H 1.09001 * 110.22978 * 241.06738 * 29 13 12 51 51 H 1.09004 * 110.22829 * 3.02137 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1521 -0.0057 5 7 4.2403 0.0002 -0.0053 6 6 3.5984 -1.1515 0.0001 7 6 2.2167 -1.1908 0.0059 8 6 1.4909 -2.5115 0.0126 9 6 1.1345 -2.8959 -1.4004 10 8 1.4354 -2.1666 -2.3214 11 7 0.4770 -4.0478 -1.6399 12 6 0.1301 -4.4213 -3.0133 13 6 -0.6067 -5.7622 -3.0066 14 6 0.2745 -6.8756 -2.4229 15 6 0.4530 -7.9257 -3.5377 16 6 -0.7816 -7.7303 -4.4499 17 6 -0.9924 -6.1964 -4.4401 18 1 -0.4039 -5.6848 -5.2017 19 7 -2.4340 -5.9275 -4.5742 20 6 -3.0987 -5.6028 -5.7267 21 1 -2.5575 -5.5228 -6.6578 22 6 -4.4678 -5.3757 -5.6977 23 7 -5.1272 -5.4727 -4.5628 24 14 -5.3743 -4.9321 -7.2697 25 1 -5.8451 -6.1728 -7.9364 26 1 -6.5404 -4.0727 -6.9429 27 1 -4.4581 -4.1985 -8.1793 28 6 -3.0247 -6.0748 -3.2345 29 6 -1.9309 -5.6642 -2.2330 30 1 -0.3634 0.0053 1.0276 31 1 -0.3634 0.8874 -0.5184 32 1 -0.3633 -0.8926 -0.5094 33 1 1.6967 2.1378 0.0004 34 1 4.1582 2.0755 -0.0102 35 1 4.1586 -2.0748 0.0006 36 1 0.5806 -2.4229 0.6056 37 1 2.1340 -3.2774 0.4462 38 1 0.2328 -4.6291 -0.9028 39 1 -0.5136 -3.6556 -3.4465 40 1 1.0401 -4.5093 -3.6067 41 1 1.2387 -6.4682 -2.1190 42 1 -0.2225 -7.3365 -1.5694 43 1 0.4647 -8.9333 -3.1220 44 1 1.3714 -7.7317 -4.0917 45 1 -1.6507 -8.2407 -4.0350 46 1 -0.5730 -8.0831 -5.4598 47 1 -6.0839 -5.3144 -4.5427 48 1 -3.8904 -5.4204 -3.1328 49 1 -3.3173 -7.1113 -3.0662 50 1 -1.9222 -6.3465 -1.3830 51 1 -2.0947 -4.6411 -1.8944 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107440938.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:06 Heat of formation + Delta-G solvation = -8.944722 kcal Electronic energy + Delta-G solvation = -30501.062405 eV Core-core repulsion = 26592.283805 eV Total energy + Delta-G solvation = -3908.778601 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.64168 -41.10055 -39.96731 -36.30876 -35.38081 -35.26497 -33.48050 -33.30666 -31.96067 -30.07036 -29.08840 -28.44486 -28.14012 -25.69606 -25.32274 -23.74860 -22.81060 -22.09407 -21.66924 -20.90264 -19.70260 -18.95780 -18.04696 -17.74512 -17.38131 -17.00668 -16.82466 -16.31865 -16.01754 -15.75067 -15.54285 -15.20208 -15.17821 -14.92602 -14.49332 -14.25346 -14.22771 -14.05467 -13.74396 -13.66643 -13.57016 -13.49587 -13.36330 -12.86788 -12.81905 -12.80814 -12.51129 -12.27442 -12.14016 -12.00249 -11.82981 -11.59462 -11.56372 -11.43809 -11.32770 -11.03584 -10.96154 -10.69329 -10.39925 -10.31522 -10.02856 -9.87667 -8.85400 -7.72759 -5.19050 0.17291 0.34300 1.44769 1.45554 1.54089 1.68985 2.24307 2.49143 2.90346 3.31108 3.51655 3.55619 3.71270 3.74521 3.76462 3.82283 3.94015 3.97874 4.05310 4.12021 4.34833 4.41079 4.48848 4.49915 4.51118 4.57142 4.61369 4.65510 4.67355 4.70698 4.72844 4.82698 4.91646 4.92880 4.98126 5.06605 5.09384 5.17206 5.18831 5.19843 5.28073 5.41822 5.43014 5.48606 5.50257 5.55043 5.60559 5.71744 5.82400 5.90789 6.41615 6.63516 7.05475 7.14485 7.32775 7.82658 8.48610 9.24732 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013240 B = 0.002715 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.275285 B =10310.798069 C =11582.309797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.041 4.041 3 C -0.180 4.180 4 C 0.085 3.915 5 N -0.518 5.518 6 C 0.098 3.902 7 C -0.129 4.129 8 C -0.091 4.091 9 C 0.510 3.490 10 O -0.586 6.586 11 N -0.708 5.708 12 C 0.156 3.844 13 C -0.071 4.071 14 C -0.102 4.102 15 C -0.112 4.112 16 C -0.131 4.131 17 C 0.152 3.848 18 H 0.053 0.947 19 N -0.610 5.610 20 C -0.229 4.229 21 H 0.075 0.925 22 C -0.067 4.067 23 N -0.945 5.945 24 Si 0.973 3.027 25 H -0.288 1.288 26 H -0.294 1.294 27 H -0.274 1.274 28 C 0.139 3.861 29 C -0.114 4.114 30 H 0.101 0.899 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.155 0.845 34 H 0.176 0.824 35 H 0.168 0.832 36 H 0.129 0.871 37 H 0.141 0.859 38 H 0.417 0.583 39 H 0.030 0.970 40 H 0.059 0.941 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.045 0.955 46 H 0.048 0.952 47 H 0.245 0.755 48 H 0.083 0.917 49 H -0.017 1.017 50 H 0.087 0.913 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.097 4.463 16.071 22.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.049 4.049 3 C -0.199 4.199 4 C -0.071 4.071 5 N -0.227 5.227 6 C -0.059 4.059 7 C -0.131 4.131 8 C -0.131 4.131 9 C 0.298 3.702 10 O -0.466 6.466 11 N -0.361 5.361 12 C 0.031 3.969 13 C -0.073 4.073 14 C -0.139 4.139 15 C -0.150 4.150 16 C -0.171 4.171 17 C 0.044 3.956 18 H 0.071 0.929 19 N -0.331 5.331 20 C -0.358 4.358 21 H 0.093 0.907 22 C -0.259 4.259 23 N -0.596 5.596 24 Si 0.802 3.198 25 H -0.215 1.215 26 H -0.220 1.220 27 H -0.199 1.199 28 C 0.013 3.987 29 C -0.153 4.153 30 H 0.119 0.881 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.173 0.827 34 H 0.193 0.807 35 H 0.185 0.815 36 H 0.147 0.853 37 H 0.158 0.842 38 H 0.254 0.746 39 H 0.048 0.952 40 H 0.078 0.922 41 H 0.103 0.897 42 H 0.100 0.900 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.064 0.936 46 H 0.067 0.933 47 H 0.055 0.945 48 H 0.101 0.899 49 H 0.001 0.999 50 H 0.106 0.894 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 15.988 5.048 15.307 22.703 hybrid contribution -2.090 -0.027 -1.178 2.399 sum 13.898 5.021 14.129 20.445 Atomic orbital electron populations 1.20880 0.89425 1.03268 1.03834 1.20516 0.97596 0.92977 0.93765 1.22301 0.95649 0.99395 1.02596 1.23152 0.92432 0.96655 0.94841 1.67671 1.42050 0.99299 1.13723 1.22923 0.91426 0.96766 0.94737 1.20395 0.94981 0.95210 1.02528 1.20667 1.03880 0.95524 0.92982 1.21089 0.76860 0.80345 0.91897 1.90730 1.55392 1.52519 1.47914 1.45863 1.58004 1.22839 1.09371 1.20985 0.97689 0.94780 0.83400 1.21841 0.95146 0.94096 0.96185 1.22192 0.99443 0.94038 0.98255 1.22229 0.96889 0.99437 0.96485 1.22866 0.97990 0.97236 0.99054 1.21993 0.84891 0.94067 0.94623 0.92934 1.44793 1.03192 1.80275 1.04878 1.19406 0.90954 1.38105 0.87330 0.90715 1.25501 0.97184 1.03175 1.00031 1.69892 1.07173 1.57606 1.24883 0.85149 0.78025 0.77442 0.79185 1.21490 1.22002 1.19900 1.21647 0.96927 0.96989 0.83120 1.22550 0.93915 1.00937 0.97900 0.88070 0.90693 0.92373 0.82697 0.80705 0.81503 0.85294 0.84151 0.74601 0.95166 0.92245 0.89650 0.90014 0.90408 0.91153 0.93603 0.93339 0.94457 0.89948 0.99883 0.89427 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.00 9.31 71.24 0.66 -1.34 16 2 C -0.04 -0.82 5.92 -19.67 -0.12 -0.94 16 3 C -0.18 -3.33 9.82 22.36 0.22 -3.11 16 4 C 0.09 1.69 11.18 84.67 0.95 2.64 16 5 N -0.52 -12.35 10.36 -195.84 -2.03 -14.38 16 6 C 0.10 2.10 10.84 84.69 0.92 3.02 16 7 C -0.13 -2.59 4.39 -19.77 -0.09 -2.67 16 8 C -0.09 -1.34 5.18 29.10 0.15 -1.19 16 9 C 0.51 12.21 7.13 87.66 0.62 12.83 16 10 O -0.59 -20.43 16.03 -3.01 -0.05 -20.48 16 11 N -0.71 -15.43 4.84 -463.06 -2.24 -17.67 16 12 C 0.16 4.68 4.27 86.38 0.37 5.05 16 13 C -0.07 -2.13 0.65 -51.21 -0.03 -2.16 16 14 C -0.10 -2.20 5.62 31.17 0.18 -2.03 16 15 C -0.11 -2.69 6.83 31.59 0.22 -2.47 16 16 C -0.13 -4.52 6.37 31.81 0.20 -4.32 16 17 C 0.15 5.96 3.59 46.04 0.17 6.12 16 18 H 0.05 2.14 7.95 -2.38 -0.02 2.13 16 19 N -0.61 -30.49 2.98 -666.32 -1.99 -32.47 16 20 C -0.23 -12.81 10.33 84.03 0.87 -11.94 16 21 H 0.07 4.09 7.83 -2.91 -0.02 4.06 16 22 C -0.07 -3.79 5.49 84.86 0.47 -3.32 16 23 N -0.95 -55.90 10.06 21.65 0.22 -55.68 16 24 Si 0.97 46.26 29.55 68.60 2.03 48.29 16 25 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 26 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 27 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 28 C 0.14 6.56 5.68 86.55 0.49 7.05 16 29 C -0.11 -3.82 5.81 31.12 0.18 -3.64 16 30 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.07 1.24 8.10 -2.38 -0.02 1.22 16 32 H 0.06 1.16 6.35 -2.38 -0.02 1.15 16 33 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 34 H 0.18 2.41 8.06 -2.91 -0.02 2.38 16 35 H 0.17 2.76 8.06 -2.91 -0.02 2.74 16 36 H 0.13 1.33 7.11 -2.39 -0.02 1.31 16 37 H 0.14 1.09 8.06 -2.39 -0.02 1.07 16 38 H 0.42 6.24 7.86 -92.71 -0.73 5.51 16 39 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 40 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.08 1.48 7.47 -2.39 -0.02 1.46 16 42 H 0.08 1.54 7.10 -2.39 -0.02 1.52 16 43 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.05 1.79 7.28 -2.39 -0.02 1.77 16 46 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 48 H 0.08 4.57 5.45 -2.39 -0.01 4.56 16 49 H -0.02 -0.85 7.71 -2.38 -0.02 -0.86 16 50 H 0.09 2.35 7.11 -2.39 -0.02 2.33 16 51 H 0.05 1.83 7.62 -2.38 -0.02 1.81 16 Total: -1.00 -76.82 397.91 2.56 -74.26 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: 0.20 Total: 20.55 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: 6.42 Total: -2.41 kcal Atomic # 7 Polarization: -114.17 SS G_CDS: -6.04 Total: -120.21 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.05 Total: -20.48 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -76.82 2.56 -74.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107440938.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.317 kcal (2) G-P(sol) polarization free energy of solvation -76.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds