Wall clock time and date at job start Wed Apr 1 2020 02:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38232 * 120.42113 * 2 1 4 4 N 1.31847 * 120.76398 * 180.23589 * 3 2 1 5 5 C 1.31893 * 121.72917 * 359.46971 * 4 3 2 6 6 C 1.38178 * 120.76127 * 0.52669 * 5 4 3 7 7 C 1.50702 * 120.41955 * 179.76825 * 6 5 4 8 8 C 1.50700 * 109.46751 * 269.97976 * 7 6 5 9 9 O 1.21280 * 120.00179 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99455 * 179.97438 * 8 7 6 11 11 C 1.46504 * 119.99753 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47182 * 180.02562 * 11 10 8 13 13 C 1.53435 * 111.21662 * 298.98306 * 12 11 10 14 14 C 1.53649 * 107.16161 * 242.09916 * 13 12 11 15 15 C 1.53895 * 105.86749 * 340.00656 * 14 13 12 16 16 C 1.53749 * 105.45683 * 28.27616 * 15 14 13 17 17 H 1.09004 * 110.52013 * 94.80845 * 16 15 14 18 18 N 1.46962 * 110.07160 * 218.82326 * 16 15 14 19 19 C 1.36943 * 126.36586 * 267.86608 * 18 16 15 20 20 H 1.07999 * 119.99453 * 0.02562 * 19 18 16 21 21 C 1.38811 * 120.00069 * 180.02562 * 19 18 16 22 22 N 1.31617 * 119.99988 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99824 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47397 * 90.00032 * 23 21 19 25 25 H 1.48498 * 109.46894 * 210.00284 * 23 21 19 26 26 H 1.48506 * 109.47173 * 329.99888 * 23 21 19 27 27 C 1.47108 * 107.27487 * 87.87011 * 18 16 15 28 28 C 1.53895 * 111.24364 * 61.21417 * 12 11 10 29 29 C 1.38634 * 120.42179 * 179.97438 * 2 1 3 30 30 H 1.08996 * 109.47195 * 90.00533 * 1 2 3 31 31 H 1.09009 * 109.46899 * 210.00384 * 1 2 3 32 32 H 1.08994 * 109.46909 * 330.00123 * 1 2 3 33 33 H 1.08002 * 119.61284 * 359.94846 * 3 2 1 34 34 H 1.07995 * 119.61789 * 180.27374 * 5 4 3 35 35 H 1.08997 * 109.46660 * 29.97500 * 7 6 5 36 36 H 1.08992 * 109.47506 * 149.97814 * 7 6 5 37 37 H 0.96999 * 120.00635 * 0.02562 * 10 8 7 38 38 H 1.09000 * 109.46933 * 300.00315 * 11 10 8 39 39 H 1.08997 * 109.47363 * 59.99954 * 11 10 8 40 40 H 1.08996 * 109.90111 * 1.49298 * 13 12 11 41 41 H 1.09011 * 109.89540 * 122.72062 * 13 12 11 42 42 H 1.09000 * 110.16640 * 99.10284 * 14 13 12 43 43 H 1.08998 * 110.17509 * 220.82587 * 14 13 12 44 44 H 1.09000 * 110.25061 * 147.28057 * 15 14 13 45 45 H 1.09002 * 110.24455 * 269.28354 * 15 14 13 46 46 H 0.96998 * 119.99385 * 179.97438 * 22 21 19 47 47 H 1.09007 * 110.08756 * 148.89972 * 27 18 16 48 48 H 1.08994 * 110.08910 * 270.41720 * 27 18 16 49 49 H 1.09002 * 110.24235 * 243.81072 * 28 12 11 50 50 H 1.09005 * 110.24016 * 5.79842 * 28 12 11 51 51 H 1.07997 * 120.78683 * 0.04405 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.1999 -0.0047 5 6 4.2257 0.0823 0.0009 6 6 3.5949 -1.1471 0.0010 7 6 4.4027 -2.4193 0.0021 8 6 4.6725 -2.8441 -1.4183 9 8 4.2500 -2.1796 -2.3407 10 7 5.3834 -3.9626 -1.6636 11 6 5.6452 -4.3761 -3.0445 12 6 6.4655 -5.6676 -3.0434 13 6 7.8194 -5.4649 -2.3505 14 6 8.9099 -5.7262 -3.4008 15 6 8.2359 -6.5525 -4.5105 16 6 6.7527 -6.1489 -4.4784 17 1 6.5559 -5.3586 -5.2030 18 7 5.9044 -7.3264 -4.7104 19 6 5.4312 -7.7607 -5.9198 20 1 5.6775 -7.2199 -6.8217 21 6 4.6352 -8.8959 -5.9866 22 7 4.3348 -9.5546 -4.8874 23 14 3.9903 -9.4887 -7.6365 24 1 4.9625 -10.4378 -8.2360 25 1 2.6867 -10.1725 -7.4417 26 1 3.8091 -8.3269 -8.5436 27 6 5.6580 -7.9518 -3.4019 28 6 5.7032 -6.8116 -2.3517 29 6 2.2090 -1.1955 0.0005 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6675 2.1277 -0.0008 34 1 5.3047 0.1286 0.0013 35 1 5.3486 -2.2485 0.5162 36 1 3.8461 -3.2027 0.5162 37 1 5.7210 -4.4943 -0.9259 38 1 4.6992 -4.5473 -3.5580 39 1 6.2013 -3.5925 -3.5591 40 1 7.8976 -4.4425 -1.9807 41 1 7.9228 -6.1694 -1.5251 42 1 9.2763 -4.7825 -3.8048 43 1 9.7314 -6.2891 -2.9578 44 1 8.6721 -6.3097 -5.4795 45 1 8.3416 -7.6177 -4.3046 46 1 3.7782 -10.3476 -4.9341 47 1 4.6792 -8.4317 -3.3947 48 1 6.4353 -8.6844 -3.1847 49 1 6.2360 -7.1328 -1.4566 50 1 4.6933 -6.4913 -2.0958 51 1 1.6888 -2.1419 0.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107488681.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:11 Heat of formation + Delta-G solvation = -12.655886 kcal Electronic energy + Delta-G solvation = -30079.554319 eV Core-core repulsion = 26170.614790 eV Total energy + Delta-G solvation = -3908.939529 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.57204 -41.08874 -40.00033 -36.32423 -35.35083 -34.56463 -34.47570 -33.36264 -32.06842 -30.04758 -28.61510 -28.50038 -28.14610 -25.75552 -25.37745 -24.13064 -22.69781 -22.09890 -21.54585 -20.87411 -19.71971 -18.95762 -18.07768 -17.85375 -17.65762 -17.04785 -16.77084 -16.34055 -16.03019 -15.53913 -15.29352 -15.21530 -15.10736 -14.97132 -14.50022 -14.30107 -14.17871 -14.08130 -13.96913 -13.64209 -13.54324 -13.37048 -13.24721 -13.04243 -12.84027 -12.76729 -12.52742 -12.29713 -12.17952 -12.05569 -11.86227 -11.61713 -11.50515 -11.47338 -11.35650 -11.02814 -10.98356 -10.70182 -10.48711 -10.40059 -10.03603 -9.71896 -8.87443 -7.74195 -5.20376 0.14245 0.34703 1.44511 1.45437 1.54029 1.68893 2.23261 2.48574 2.88791 3.30162 3.48811 3.54710 3.71318 3.72595 3.74784 3.85918 3.93445 4.06030 4.09101 4.09497 4.28602 4.33766 4.38796 4.47199 4.48755 4.58305 4.65072 4.67329 4.67491 4.78451 4.81328 4.83062 4.88621 4.92956 4.98558 5.10349 5.17020 5.18858 5.19637 5.26883 5.29315 5.34888 5.41652 5.46387 5.49539 5.55092 5.60513 5.69904 5.81061 5.89369 6.40004 6.63053 7.03127 7.13833 7.32305 7.82235 8.47363 9.23851 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013072 B = 0.002516 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.507105 B =11124.938720 C =12491.688575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.142 4.142 3 C 0.078 3.922 4 N -0.509 5.509 5 C 0.087 3.913 6 C -0.118 4.118 7 C -0.089 4.089 8 C 0.510 3.490 9 O -0.589 6.589 10 N -0.708 5.708 11 C 0.156 3.844 12 C -0.069 4.069 13 C -0.102 4.102 14 C -0.111 4.111 15 C -0.133 4.133 16 C 0.156 3.844 17 H 0.041 0.959 18 N -0.608 5.608 19 C -0.230 4.230 20 H 0.075 0.925 21 C -0.066 4.066 22 N -0.945 5.945 23 Si 0.974 3.026 24 H -0.287 1.287 25 H -0.293 1.293 26 H -0.274 1.274 27 C 0.141 3.859 28 C -0.116 4.116 29 C -0.080 4.080 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.172 0.828 34 H 0.165 0.835 35 H 0.142 0.858 36 H 0.133 0.867 37 H 0.417 0.583 38 H 0.031 0.969 39 H 0.061 0.939 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.050 0.950 45 H 0.040 0.960 46 H 0.246 0.754 47 H 0.081 0.919 48 H -0.018 1.018 49 H 0.091 0.909 50 H 0.054 0.946 51 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.976 15.900 17.080 23.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.143 4.143 3 C -0.078 4.078 4 N -0.217 5.217 5 C -0.070 4.070 6 C -0.120 4.120 7 C -0.128 4.128 8 C 0.297 3.703 9 O -0.469 6.469 10 N -0.360 5.360 11 C 0.031 3.969 12 C -0.071 4.071 13 C -0.140 4.140 14 C -0.149 4.149 15 C -0.173 4.173 16 C 0.048 3.952 17 H 0.060 0.940 18 N -0.330 5.330 19 C -0.359 4.359 20 H 0.093 0.907 21 C -0.259 4.259 22 N -0.595 5.595 23 Si 0.803 3.197 24 H -0.214 1.214 25 H -0.219 1.219 26 H -0.199 1.199 27 C 0.016 3.984 28 C -0.155 4.155 29 C -0.106 4.106 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.189 0.811 34 H 0.182 0.818 35 H 0.160 0.840 36 H 0.151 0.849 37 H 0.255 0.745 38 H 0.049 0.951 39 H 0.079 0.921 40 H 0.104 0.896 41 H 0.101 0.899 42 H 0.090 0.910 43 H 0.093 0.907 44 H 0.069 0.931 45 H 0.059 0.941 46 H 0.056 0.944 47 H 0.099 0.901 48 H 0.000 1.000 49 H 0.109 0.891 50 H 0.073 0.927 51 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.982 17.002 16.301 23.574 hybrid contribution -0.728 -1.905 -1.279 2.407 sum 0.254 15.097 15.022 21.299 Atomic orbital electron populations 1.20773 0.88272 1.04368 1.03076 1.21239 0.99096 0.93726 1.00287 1.23046 0.89792 0.98679 0.96328 1.67644 1.09381 1.31949 1.12738 1.22868 1.00933 0.87344 0.95814 1.20518 0.94675 0.96053 1.00755 1.20666 1.03717 0.95770 0.92683 1.21147 0.76962 0.80007 0.92134 1.90733 1.52678 1.55241 1.48228 1.45853 1.55185 1.26231 1.08754 1.20989 0.97844 0.94812 0.83251 1.21717 0.96287 0.93267 0.95814 1.22130 0.91089 1.02865 0.97896 1.21964 0.97848 0.99724 0.95368 1.22552 0.96534 0.99362 0.98823 1.21453 0.90560 0.88814 0.94382 0.94037 1.44649 1.56898 1.28212 1.03256 1.19398 1.23835 1.07145 0.85550 0.90711 1.25524 1.01474 0.98396 1.00478 1.69922 1.42788 1.20362 1.26468 0.85132 0.77170 0.78004 0.79383 1.21440 1.21947 1.19864 1.21821 1.00532 0.92839 0.83221 1.22853 0.99479 0.95053 0.98120 1.21693 0.93737 0.99189 0.95981 0.90873 0.90351 0.89497 0.81077 0.81778 0.84019 0.84929 0.74524 0.95052 0.92112 0.89613 0.89929 0.90967 0.90712 0.93083 0.94103 0.94417 0.90122 0.99991 0.89105 0.92677 0.83815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 10.04 71.24 0.72 -0.60 16 2 C -0.14 -2.62 5.90 -19.77 -0.12 -2.74 16 3 C 0.08 1.59 10.86 84.69 0.92 2.51 16 4 N -0.51 -12.32 10.36 -195.84 -2.03 -14.35 16 5 C 0.09 1.88 10.86 84.67 0.92 2.80 16 6 C -0.12 -2.31 4.39 -19.77 -0.09 -2.40 16 7 C -0.09 -1.23 5.86 29.10 0.17 -1.06 16 8 C 0.51 12.04 7.82 87.66 0.69 12.72 16 9 O -0.59 -20.51 16.03 -3.03 -0.05 -20.56 16 10 N -0.71 -15.24 4.84 -463.06 -2.24 -17.48 16 11 C 0.16 4.65 4.23 86.38 0.37 5.01 16 12 C -0.07 -2.09 0.72 -51.38 -0.04 -2.13 16 13 C -0.10 -2.25 5.61 30.96 0.17 -2.08 16 14 C -0.11 -2.71 6.80 31.11 0.21 -2.50 16 15 C -0.13 -4.62 6.45 31.15 0.20 -4.42 16 16 C 0.16 6.19 3.39 45.51 0.15 6.34 16 17 H 0.04 1.73 7.85 -2.38 -0.02 1.71 16 18 N -0.61 -30.67 2.97 -667.96 -1.98 -32.66 16 19 C -0.23 -12.95 10.32 84.03 0.87 -12.08 16 20 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 21 C -0.07 -3.78 5.49 84.86 0.47 -3.32 16 22 N -0.95 -56.03 10.06 21.65 0.22 -55.82 16 23 Si 0.97 46.31 29.55 68.60 2.03 48.34 16 24 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 25 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 26 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 27 C 0.14 6.73 6.00 86.98 0.52 7.25 16 28 C -0.12 -3.89 5.81 31.61 0.18 -3.70 16 29 C -0.08 -1.57 9.55 22.47 0.21 -1.35 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 0.80 8.10 -2.38 -0.02 0.78 16 32 H 0.09 0.74 8.09 -2.39 -0.02 0.73 16 33 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 34 H 0.17 2.84 8.06 -2.91 -0.02 2.81 16 35 H 0.14 1.00 8.09 -2.39 -0.02 0.98 16 36 H 0.13 1.17 8.09 -2.39 -0.02 1.15 16 37 H 0.42 6.11 7.82 -92.71 -0.72 5.39 16 38 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.09 1.49 7.46 -2.39 -0.02 1.48 16 41 H 0.08 1.59 7.01 -2.38 -0.02 1.57 16 42 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.04 1.63 7.94 -2.39 -0.02 1.62 16 46 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 47 H 0.08 4.49 5.51 -2.38 -0.01 4.48 16 48 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 49 H 0.09 2.41 7.04 -2.39 -0.02 2.39 16 50 H 0.05 1.85 7.65 -2.38 -0.02 1.83 16 51 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -77.62 403.16 2.67 -74.95 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 0.20 Total: 19.29 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: 6.53 Total: -1.73 kcal Atomic # 7 Polarization: -114.26 SS G_CDS: -6.04 Total: -120.30 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.05 Total: -20.56 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -77.62 2.67 -74.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107488681.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.298 kcal (2) G-P(sol) polarization free energy of solvation -77.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds