Wall clock time and date at job start Wed Apr 1 2020 01:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31877 * 119.61698 * 2 1 4 4 C 1.31856 * 121.72673 * 179.97438 * 3 2 1 5 5 C 1.38224 * 120.76155 * 359.97438 * 4 3 2 6 6 C 1.38624 * 119.16177 * 359.77405 * 5 4 3 7 7 C 1.38178 * 119.61450 * 180.02562 * 2 1 3 8 8 C 1.50699 * 120.42116 * 359.97438 * 7 2 1 9 9 C 1.50706 * 109.46817 * 84.99708 * 8 7 2 10 10 O 1.21274 * 120.00042 * 359.72211 * 9 8 7 11 11 N 1.34777 * 119.99766 * 179.97438 * 9 8 7 12 12 C 1.46496 * 120.00266 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47425 * 180.02562 * 12 11 9 14 14 C 1.53516 * 111.15538 * 299.11334 * 13 12 11 15 15 C 1.54184 * 106.58898 * 240.87917 * 14 13 12 16 16 C 1.54739 * 104.35005 * 335.43384 * 15 14 13 17 17 C 1.54665 * 111.22675 * 180.02562 * 13 12 11 18 18 H 1.09005 * 112.40732 * 19.49139 * 17 13 12 19 19 N 1.47252 * 106.10191 * 256.40386 * 17 13 12 20 20 C 1.36944 * 126.52357 * 150.11390 * 19 17 13 21 21 H 1.08000 * 119.99499 * 359.97438 * 20 19 17 22 22 C 1.38807 * 120.00173 * 180.02562 * 20 19 17 23 23 N 1.31617 * 120.00320 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99822 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.46948 * 359.97438 * 24 22 20 26 26 H 1.48505 * 109.46947 * 119.99803 * 24 22 20 27 27 H 1.48499 * 109.47048 * 239.99781 * 24 22 20 28 28 C 1.47157 * 106.96166 * 330.07726 * 19 17 13 29 29 C 1.53672 * 111.17489 * 62.60264 * 13 12 11 30 30 H 1.09002 * 109.47304 * 269.97970 * 1 2 3 31 31 H 1.09006 * 109.47120 * 29.98306 * 1 2 3 32 32 H 1.09005 * 109.46892 * 149.98145 * 1 2 3 33 33 H 1.08001 * 119.61513 * 180.02562 * 4 3 2 34 34 H 1.08007 * 120.41725 * 180.02562 * 5 4 3 35 35 H 1.07997 * 120.79031 * 180.23106 * 6 5 4 36 36 H 1.09000 * 109.47247 * 324.99771 * 8 7 2 37 37 H 1.09001 * 109.47358 * 204.99197 * 8 7 2 38 38 H 0.96999 * 120.00043 * 0.02562 * 11 9 8 39 39 H 1.09004 * 109.47212 * 300.00463 * 12 11 9 40 40 H 1.09000 * 109.46684 * 60.00307 * 12 11 9 41 41 H 1.09004 * 110.04247 * 0.98703 * 14 13 12 42 42 H 1.08998 * 110.03999 * 122.43512 * 14 13 12 43 43 H 1.09001 * 110.79859 * 216.50310 * 15 14 13 44 44 H 1.08999 * 110.10982 * 94.02461 * 15 14 13 45 45 H 1.09000 * 110.64892 * 278.62549 * 16 15 14 46 46 H 1.08992 * 110.65122 * 155.53347 * 16 15 14 47 47 H 0.96997 * 120.00166 * 180.02562 * 23 22 20 48 48 H 1.09000 * 110.09675 * 150.06655 * 28 19 17 49 49 H 1.09004 * 110.09241 * 271.59931 * 28 19 17 50 50 H 1.09001 * 110.22978 * 241.06738 * 29 13 12 51 51 H 1.09004 * 110.22829 * 3.02137 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1465 0.0000 4 6 3.4764 1.1950 0.0005 5 6 4.2267 0.0341 0.0016 6 6 3.5766 -1.1903 0.0069 7 6 2.1899 -1.2013 -0.0005 8 6 1.4372 -2.5068 -0.0005 9 6 1.0784 -2.8798 -1.4160 10 8 1.3976 -2.1541 -2.3337 11 7 0.3983 -4.0172 -1.6614 12 6 0.0490 -4.3795 -3.0372 13 6 -0.7150 -5.7051 -3.0372 14 6 0.1409 -6.8380 -2.4535 15 6 0.3021 -7.8883 -3.5707 16 6 -0.9247 -7.6650 -4.4870 17 6 -1.1041 -6.1271 -4.4734 18 1 -0.5024 -5.6255 -5.2313 19 7 -2.5393 -5.8284 -4.6121 20 6 -3.1929 -5.4868 -5.7661 21 1 -2.6466 -5.4152 -6.6950 22 6 -4.5571 -5.2317 -5.7416 23 7 -5.2227 -5.3185 -4.6095 24 14 -5.4484 -4.7652 -7.3157 25 1 -4.4813 -4.7362 -8.4421 26 1 -6.5091 -5.7652 -7.5989 27 1 -6.0632 -3.4228 -7.1571 28 6 -3.1380 -5.9674 -3.2751 29 6 -2.0399 -5.5822 -2.2683 30 1 -0.3634 -0.0004 1.0277 31 1 -0.3634 0.8902 -0.5136 32 1 -0.3633 -0.8899 -0.5141 33 1 3.9752 2.1530 0.0009 34 1 5.3057 0.0803 0.0024 35 1 4.1367 -2.1136 0.0116 36 1 0.5267 -2.4013 0.5893 37 1 2.0628 -3.2870 0.4332 38 1 0.1395 -4.5956 -0.9269 39 1 -0.5771 -3.5996 -3.4705 40 1 0.9594 -4.4845 -3.6274 41 1 1.1121 -6.4513 -2.1447 42 1 -0.3687 -7.2911 -1.6032 43 1 0.2915 -8.8971 -3.1580 44 1 1.2264 -7.7116 -4.1207 45 1 -1.8057 -8.1587 -4.0768 46 1 -0.7196 -8.0191 -5.4971 47 1 -6.1761 -5.1406 -4.5925 48 1 -3.9906 -5.2957 -3.1747 49 1 -3.4525 -6.9981 -3.1110 50 1 -2.0485 -6.2670 -1.4203 51 1 -2.1840 -4.5569 -1.9272 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107546382.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:12 Heat of formation + Delta-G solvation = 12.768008 kcal Electronic energy + Delta-G solvation = -30511.019399 eV Core-core repulsion = 26603.182333 eV Total energy + Delta-G solvation = -3907.837066 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.75688 -39.88033 -38.80893 -34.79685 -33.93566 -33.90458 -33.12521 -31.62995 -30.46153 -29.15809 -27.97195 -27.10718 -26.83109 -24.28910 -23.70178 -22.83559 -22.04028 -20.58950 -20.49876 -19.56894 -18.34466 -17.27628 -17.01551 -16.84086 -16.57488 -15.82042 -15.23240 -15.05735 -14.78792 -14.62970 -14.39388 -13.99623 -13.64767 -13.56295 -13.36536 -13.30507 -13.23144 -13.01357 -12.59405 -12.56445 -12.31935 -12.19272 -11.88853 -11.63702 -11.57688 -11.21672 -11.00335 -10.81638 -10.65655 -10.54404 -10.29530 -10.11788 -10.07450 -10.01534 -9.89500 -9.67072 -9.61348 -9.55962 -9.50198 -8.91951 -8.86887 -8.67452 -6.88289 -5.64565 -3.09620 0.93275 1.13884 2.68040 3.23438 3.39263 3.45432 3.47327 3.69742 4.16188 4.39354 4.47136 4.57716 4.72294 4.79824 4.82929 4.94879 5.03109 5.07133 5.14252 5.16984 5.40610 5.44481 5.48528 5.49669 5.53663 5.56385 5.61056 5.73716 5.89429 5.92871 5.94481 5.99934 6.04982 6.07098 6.08080 6.12351 6.17241 6.30059 6.39805 6.43311 6.47165 6.56083 6.65966 6.67955 6.78010 6.87918 7.06417 7.49427 7.59257 7.62756 7.85057 7.86909 8.29697 8.40780 9.20921 9.81795 10.48223 11.35752 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013220 B = 0.002721 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.558398 B =10288.923751 C =11565.008679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.147 3.853 3 N -0.485 5.485 4 C 0.099 3.901 5 C -0.181 4.181 6 C -0.062 4.062 7 C -0.114 4.114 8 C -0.101 4.101 9 C 0.510 3.490 10 O -0.534 6.534 11 N -0.722 5.722 12 C 0.142 3.858 13 C -0.086 4.086 14 C -0.110 4.110 15 C -0.123 4.123 16 C -0.135 4.135 17 C 0.168 3.832 18 H 0.064 0.936 19 N -0.588 5.588 20 C -0.217 4.217 21 H 0.078 0.922 22 C -0.012 4.012 23 N -0.921 5.921 24 Si 0.913 3.087 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.136 3.864 29 C -0.129 4.129 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.154 0.846 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.399 0.601 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.069 0.931 46 H 0.054 0.946 47 H 0.251 0.749 48 H 0.121 0.879 49 H 0.005 0.995 50 H 0.053 0.947 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.386 2.854 14.035 21.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.009 3.991 3 N -0.195 5.195 4 C -0.058 4.058 5 C -0.201 4.201 6 C -0.088 4.088 7 C -0.116 4.116 8 C -0.142 4.142 9 C 0.295 3.705 10 O -0.410 6.410 11 N -0.373 5.373 12 C 0.019 3.981 13 C -0.088 4.088 14 C -0.148 4.148 15 C -0.161 4.161 16 C -0.176 4.176 17 C 0.058 3.942 18 H 0.082 0.918 19 N -0.309 5.309 20 C -0.346 4.346 21 H 0.096 0.904 22 C -0.207 4.207 23 N -0.569 5.569 24 Si 0.744 3.256 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 C 0.011 3.989 29 C -0.168 4.168 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.171 0.829 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.233 0.767 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.088 0.912 46 H 0.073 0.927 47 H 0.062 0.938 48 H 0.138 0.862 49 H 0.023 0.977 50 H 0.072 0.928 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 15.870 4.242 13.232 21.093 hybrid contribution 0.033 -1.023 -0.456 1.121 sum 15.902 3.219 12.776 20.651 Atomic orbital electron populations 1.20779 0.88909 1.04120 1.02771 1.21093 0.96934 0.87684 0.93370 1.67524 1.10066 1.29135 1.12747 1.22710 0.89519 0.98412 0.95120 1.22051 1.01316 0.93406 1.03295 1.21421 0.93554 0.98550 0.95278 1.20082 0.94180 0.94949 1.02437 1.20652 1.02151 0.95628 0.95749 1.20383 0.78282 0.81148 0.90710 1.90745 1.53451 1.50607 1.46204 1.46072 1.57273 1.23682 1.10313 1.21375 0.98632 0.96537 0.81509 1.22014 0.95205 0.92739 0.98860 1.22205 0.98854 0.95575 0.98193 1.22264 0.98809 0.97886 0.97114 1.23027 0.96824 0.99431 0.98275 1.21673 0.87625 0.92455 0.92402 0.91791 1.44574 1.01666 1.79328 1.05292 1.19149 0.90850 1.38373 0.86205 0.90394 1.24760 0.96357 1.02237 0.97323 1.69633 1.07628 1.56150 1.23538 0.86007 0.79594 0.77773 0.82204 1.20524 1.21813 1.21759 1.21866 0.95730 0.99439 0.81857 1.22705 0.95321 1.00346 0.98446 0.90286 0.90173 0.90649 0.82888 0.84898 0.85026 0.87479 0.87918 0.76669 0.90921 0.92058 0.92398 0.91990 0.92576 0.92513 0.91229 0.92680 0.93783 0.86194 0.97666 0.92826 0.92602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 9.39 36.01 0.34 -0.86 16 2 C 0.15 1.85 6.78 -82.59 -0.56 1.29 16 3 N -0.49 -6.37 10.27 -9.48 -0.10 -6.47 16 4 C 0.10 1.05 11.18 -17.55 -0.20 0.85 16 5 C -0.18 -1.68 10.11 -39.44 -0.40 -2.08 16 6 C -0.06 -0.62 9.84 -39.28 -0.39 -1.00 16 7 C -0.11 -1.28 4.39 -104.48 -0.46 -1.74 16 8 C -0.10 -0.92 5.16 -29.03 -0.15 -1.07 16 9 C 0.51 6.65 7.05 -10.98 -0.08 6.57 16 10 O -0.53 -9.48 16.03 5.56 0.09 -9.39 16 11 N -0.72 -8.83 4.84 -60.29 -0.29 -9.12 16 12 C 0.14 2.21 4.27 -4.04 -0.02 2.20 16 13 C -0.09 -1.36 0.65 -153.02 -0.10 -1.46 16 14 C -0.11 -1.43 5.62 -25.85 -0.15 -1.57 16 15 C -0.12 -1.67 6.83 -25.20 -0.17 -1.85 16 16 C -0.14 -2.37 6.37 -24.85 -0.16 -2.53 16 17 C 0.17 3.27 3.59 -65.68 -0.24 3.04 16 18 H 0.06 1.27 7.95 -51.93 -0.41 0.86 16 19 N -0.59 -14.23 2.98 -161.96 -0.48 -14.71 16 20 C -0.22 -5.88 10.33 -15.06 -0.16 -6.04 16 21 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 22 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 23 N -0.92 -26.23 10.06 55.49 0.56 -25.67 16 24 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 28 C 0.14 3.14 5.68 -3.22 -0.02 3.12 16 29 C -0.13 -2.25 5.81 -25.92 -0.15 -2.40 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.86 6.15 -51.93 -0.32 0.54 16 33 H 0.15 1.16 8.06 -52.49 -0.42 0.73 16 34 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 35 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.11 0.78 7.00 -51.93 -0.36 0.41 16 37 H 0.10 0.65 8.06 -51.93 -0.42 0.23 16 38 H 0.40 3.85 7.86 -40.82 -0.32 3.53 16 39 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.06 0.66 7.47 -51.93 -0.39 0.27 16 42 H 0.06 0.76 7.10 -51.93 -0.37 0.39 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.07 1.36 7.28 -51.93 -0.38 0.98 16 46 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 47 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 48 H 0.12 3.19 5.45 -51.93 -0.28 2.90 16 49 H 0.01 0.13 7.71 -51.93 -0.40 -0.27 16 50 H 0.05 0.81 7.11 -51.93 -0.37 0.44 16 51 H 0.06 0.97 7.62 -51.93 -0.40 0.58 16 LS Contribution 397.69 15.07 5.99 5.99 Total: -1.00 -33.02 397.69 -10.59 -43.60 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -8.19 Total: 4.77 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: -3.14 Total: -5.95 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: -0.31 Total: -55.97 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.09 Total: -9.39 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.02 -10.59 -43.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107546382.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.372 kcal (2) G-P(sol) polarization free energy of solvation -33.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds