Wall clock time and date at job start Wed Apr 1 2020 02:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38236 * 120.41916 * 2 1 4 4 N 1.31850 * 120.76401 * 180.02562 * 3 2 1 5 5 C 1.31884 * 121.72562 * 359.70749 * 4 3 2 6 6 C 1.38179 * 120.76736 * 0.58137 * 5 4 3 7 7 C 1.50704 * 120.42108 * 179.70491 * 6 5 4 8 8 C 1.52997 * 109.46903 * 269.72389 * 7 6 5 9 9 C 1.50704 * 109.46903 * 179.97438 * 8 7 6 10 10 O 1.21285 * 119.99983 * 359.97438 * 9 8 7 11 11 N 1.34772 * 120.00213 * 180.02562 * 9 8 7 12 12 C 1.46495 * 120.00287 * 180.02562 * 11 9 8 13 13 C 1.54329 * 111.69191 * 298.98436 * 12 11 9 14 14 C 1.55057 * 103.93591 * 262.78442 * 13 12 11 15 15 C 1.55049 * 102.11115 * 319.94729 * 14 13 12 16 16 C 1.54319 * 103.93912 * 40.06176 * 15 14 13 17 17 H 1.08991 * 111.69896 * 98.07085 * 16 15 14 18 18 C 1.53779 * 109.05698 * 222.03218 * 16 15 14 19 19 N 1.47214 * 106.38200 * 94.88064 * 18 16 15 20 20 C 1.36939 * 126.70119 * 211.32136 * 19 18 16 21 21 H 1.08001 * 119.99530 * 179.97438 * 20 19 18 22 22 C 1.38812 * 120.00272 * 359.97438 * 20 19 18 23 23 N 1.31621 * 119.99697 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00203 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46853 * 59.99467 * 24 22 20 26 26 H 1.48497 * 109.47082 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46943 * 299.99593 * 24 22 20 28 28 C 1.47206 * 106.59368 * 31.28393 * 19 18 16 29 29 C 1.38625 * 120.42266 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.46709 * 269.97397 * 1 2 3 31 31 H 1.08996 * 109.47057 * 29.97378 * 1 2 3 32 32 H 1.09002 * 109.47018 * 149.97941 * 1 2 3 33 33 H 1.07997 * 119.61571 * 0.04487 * 3 2 1 34 34 H 1.07997 * 119.62004 * 180.31091 * 5 4 3 35 35 H 1.08997 * 109.46737 * 149.72580 * 7 6 5 36 36 H 1.08998 * 109.47089 * 29.72412 * 7 6 5 37 37 H 1.08997 * 109.47268 * 60.00516 * 8 7 6 38 38 H 1.08998 * 109.47267 * 299.99914 * 8 7 6 39 39 H 0.97011 * 119.99749 * 359.97438 * 11 9 8 40 40 H 1.08994 * 110.53630 * 144.16463 * 13 12 11 41 41 H 1.08998 * 110.52869 * 21.39230 * 13 12 11 42 42 H 1.08998 * 110.90142 * 78.15239 * 14 13 12 43 43 H 1.09000 * 110.89991 * 201.74314 * 14 13 12 44 44 H 1.09005 * 110.53259 * 158.67741 * 15 14 13 45 45 H 1.09002 * 110.53474 * 281.29930 * 15 14 13 46 46 H 1.09006 * 110.07222 * 214.10438 * 18 16 15 47 47 H 1.08995 * 110.07679 * 335.59163 * 18 16 15 48 48 H 0.97001 * 119.99566 * 180.02562 * 23 22 20 49 49 H 1.09001 * 110.07637 * 87.94685 * 28 19 18 50 50 H 1.09006 * 110.07879 * 209.43134 * 28 19 18 51 51 H 1.08003 * 120.78979 * 359.95225 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1921 0.0000 4 7 3.5254 1.2000 -0.0005 5 6 4.2256 0.0824 0.0047 6 6 3.5949 -1.1470 -0.0011 7 6 4.4028 -2.4192 -0.0018 8 6 4.6756 -2.8492 -1.4445 9 6 5.4841 -4.1210 -1.4452 10 8 5.8103 -4.6328 -0.3951 11 7 5.8454 -4.6893 -2.6127 12 6 6.6308 -5.9259 -2.6133 13 6 7.9955 -5.7353 -1.9183 14 6 8.9790 -5.4815 -3.0899 15 6 8.4786 -6.4875 -4.1584 16 6 6.9411 -6.4088 -4.0519 17 1 6.5176 -5.7528 -4.8123 18 6 6.3585 -7.8293 -4.1376 19 7 6.1809 -8.2897 -2.7506 20 6 6.2732 -9.5788 -2.2980 21 1 6.1222 -9.7955 -1.2508 22 6 6.5606 -10.6070 -3.1852 23 7 6.7441 -10.3429 -4.4615 24 14 6.6872 -12.3654 -2.5676 25 1 5.3955 -12.7695 -1.9563 26 1 7.0002 -13.2680 -3.7045 27 1 7.7659 -12.4566 -1.5511 28 6 5.8857 -7.0934 -1.9452 29 6 2.2090 -1.1954 -0.0005 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3633 0.8902 -0.5134 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6675 2.1277 0.0007 34 1 5.3046 0.1286 0.0092 35 1 3.8465 -3.2031 0.5120 36 1 5.3491 -2.2489 0.5117 37 1 5.2319 -2.0653 -1.9583 38 1 3.7294 -3.0195 -1.9580 39 1 5.5847 -4.2797 -3.4526 40 1 8.2755 -6.6360 -1.3721 41 1 7.9671 -4.8748 -1.2498 42 1 8.8966 -4.4567 -3.4517 43 1 10.0034 -5.7067 -2.7932 44 1 8.8091 -6.1855 -5.1522 45 1 8.8290 -7.4940 -3.9296 46 1 5.3971 -7.8090 -4.6510 47 1 7.0501 -8.4862 -4.6651 48 1 6.9446 -11.0615 -5.0814 49 1 4.8130 -6.8997 -1.9422 50 1 6.2434 -7.2316 -0.9248 51 1 1.6889 -2.1419 -0.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111804071.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:19:16 Heat of formation + Delta-G solvation = 8.656080 kcal Electronic energy + Delta-G solvation = -30010.956110 eV Core-core repulsion = 26102.940737 eV Total energy + Delta-G solvation = -3908.015373 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.65709 -40.14800 -38.24944 -34.80891 -34.38883 -33.89277 -33.36568 -31.45529 -30.56020 -29.33965 -27.75171 -27.61049 -25.34642 -24.62054 -24.16244 -23.24645 -21.45565 -20.72781 -20.53609 -19.24207 -18.83360 -17.29432 -17.21588 -16.97138 -16.57385 -15.72536 -15.30163 -14.84275 -14.63802 -14.57333 -14.30242 -13.89304 -13.55266 -13.48490 -13.42547 -13.32709 -13.23691 -13.10081 -13.03114 -12.78222 -12.48782 -12.32026 -11.89749 -11.70491 -11.28335 -11.20267 -11.02841 -10.89897 -10.64021 -10.54541 -10.30502 -10.21355 -10.07399 -9.96049 -9.91290 -9.89768 -9.70722 -9.67440 -9.39463 -9.04347 -8.74186 -8.58320 -6.85655 -5.64342 -3.08648 0.79320 0.98765 2.85964 3.33144 3.41008 3.44980 3.46363 3.53977 4.14882 4.42512 4.43733 4.49959 4.68425 4.69397 4.76465 4.86888 4.90886 4.96888 5.15118 5.18341 5.20419 5.29778 5.36426 5.40779 5.45408 5.50634 5.58915 5.66487 5.69491 5.86340 5.89574 5.91319 5.95952 6.02883 6.07362 6.13293 6.14507 6.26831 6.36802 6.42574 6.43864 6.58581 6.65003 6.79701 6.84890 6.97247 7.15386 7.42016 7.62321 7.69438 7.78309 7.85502 8.39395 8.50686 9.21595 9.81926 10.49166 11.36978 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017637 B = 0.002239 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.233495 B =12501.978757 C =13340.252453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.136 4.136 3 C 0.089 3.911 4 N -0.481 5.481 5 C 0.094 3.906 6 C -0.124 4.124 7 C -0.061 4.061 8 C -0.135 4.135 9 C 0.509 3.491 10 O -0.534 6.534 11 N -0.711 5.711 12 C 0.158 3.842 13 C -0.111 4.111 14 C -0.125 4.125 15 C -0.109 4.109 16 C -0.115 4.115 17 H 0.069 0.931 18 C 0.138 3.862 19 N -0.593 5.593 20 C -0.215 4.215 21 H 0.078 0.922 22 C -0.012 4.012 23 N -0.923 5.923 24 Si 0.916 3.084 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.142 3.858 29 C -0.075 4.075 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.152 0.848 34 H 0.155 0.845 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.395 0.605 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.059 0.941 44 H 0.055 0.945 45 H 0.080 0.920 46 H 0.002 0.998 47 H 0.130 0.870 48 H 0.253 0.747 49 H 0.012 0.988 50 H 0.051 0.949 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.737 21.543 3.688 22.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.138 4.138 3 C -0.069 4.069 4 N -0.188 5.188 5 C -0.063 4.063 6 C -0.126 4.126 7 C -0.099 4.099 8 C -0.175 4.175 9 C 0.295 3.705 10 O -0.411 6.411 11 N -0.361 5.361 12 C 0.072 3.928 13 C -0.149 4.149 14 C -0.163 4.163 15 C -0.146 4.146 16 C -0.135 4.135 17 H 0.087 0.913 18 C 0.013 3.987 19 N -0.317 5.317 20 C -0.343 4.343 21 H 0.096 0.904 22 C -0.207 4.207 23 N -0.572 5.572 24 Si 0.746 3.254 25 H -0.213 1.213 26 H -0.216 1.216 27 H -0.211 1.211 28 C 0.015 3.985 29 C -0.101 4.101 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.170 0.830 34 H 0.172 0.828 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.229 0.771 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.099 0.901 46 H 0.020 0.980 47 H 0.147 0.853 48 H 0.064 0.936 49 H 0.030 0.970 50 H 0.069 0.931 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.011 21.711 4.374 22.948 hybrid contribution -0.712 -1.398 -0.223 1.584 sum -6.723 20.313 4.151 21.795 Atomic orbital electron populations 1.20735 0.90199 1.03218 1.02672 1.20957 0.97617 0.94160 1.01057 1.22648 0.90009 0.97423 0.96779 1.67677 1.08347 1.31298 1.11492 1.22697 1.00347 0.87126 0.96144 1.20981 0.94542 0.96830 1.00259 1.20270 1.00372 0.93340 0.95940 1.21650 1.01136 0.96135 0.98592 1.20500 0.80074 0.85767 0.84134 1.90716 1.55068 1.64154 1.31157 1.46085 1.55410 1.26571 1.08057 1.21805 0.90984 0.83371 0.96687 1.22637 0.93228 1.02065 0.96978 1.22598 0.98547 0.98541 0.96566 1.22443 0.94459 1.00200 0.97520 1.23026 0.96590 1.00480 0.93435 0.91267 1.22041 0.99066 0.89917 0.87693 1.44442 1.81973 1.01660 1.03588 1.19059 1.40257 0.81470 0.93522 0.90432 1.24756 1.02383 0.98115 0.95485 1.69580 1.55510 1.30449 1.01689 0.86125 0.77922 0.83985 0.77336 1.21258 1.21574 1.21133 1.21496 0.95630 0.86360 0.95057 1.21474 0.93517 0.98358 0.96728 0.90856 0.91158 0.91181 0.83049 0.82796 0.89743 0.89648 0.89037 0.89052 0.77077 0.90455 0.91804 0.92567 0.92194 0.92629 0.90143 0.97970 0.85323 0.93633 0.97033 0.93100 0.84744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.58 10.04 36.01 0.36 -0.22 16 2 C -0.14 -1.07 5.90 -104.48 -0.62 -1.69 16 3 C 0.09 0.77 10.86 -17.54 -0.19 0.58 16 4 N -0.48 -5.09 10.36 -13.25 -0.14 -5.22 16 5 C 0.09 0.90 10.86 -17.55 -0.19 0.71 16 6 C -0.12 -1.13 5.15 -104.48 -0.54 -1.67 16 7 C -0.06 -0.58 4.66 -27.88 -0.13 -0.71 16 8 C -0.13 -1.28 5.68 -27.88 -0.16 -1.44 16 9 C 0.51 7.08 7.14 -10.99 -0.08 7.00 16 10 O -0.53 -9.45 13.97 5.55 0.08 -9.37 16 11 N -0.71 -10.03 5.22 -45.68 -0.24 -10.27 16 12 C 0.16 2.82 0.92 -129.73 -0.12 2.71 16 13 C -0.11 -1.94 5.51 -24.95 -0.14 -2.07 16 14 C -0.12 -1.91 6.92 -24.56 -0.17 -2.08 16 15 C -0.11 -1.86 6.23 -24.96 -0.16 -2.02 16 16 C -0.11 -2.10 3.66 -88.53 -0.32 -2.42 16 17 H 0.07 1.09 7.75 -51.93 -0.40 0.69 16 18 C 0.14 3.28 5.56 -3.25 -0.02 3.26 16 19 N -0.59 -15.18 3.39 -171.14 -0.58 -15.76 16 20 C -0.21 -5.99 10.34 -15.06 -0.16 -6.15 16 21 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 22 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 23 N -0.92 -26.33 10.08 55.49 0.56 -25.77 16 24 Si 0.92 22.04 29.55 -169.99 -5.02 17.02 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 28 C 0.14 3.16 5.31 -3.25 -0.02 3.15 16 29 C -0.07 -0.64 9.55 -39.28 -0.37 -1.01 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 32 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 33 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.08 0.89 8.05 -51.93 -0.42 0.47 16 36 H 0.08 0.85 8.05 -51.93 -0.42 0.44 16 37 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.40 4.44 8.32 -40.82 -0.34 4.10 16 40 H 0.08 1.54 7.56 -51.93 -0.39 1.14 16 41 H 0.06 1.10 6.64 -51.93 -0.34 0.76 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.08 1.63 7.57 -51.93 -0.39 1.24 16 46 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 47 H 0.13 3.39 4.89 -51.93 -0.25 3.14 16 48 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 49 H 0.01 0.28 8.08 -51.93 -0.42 -0.14 16 50 H 0.05 1.20 7.56 -51.93 -0.39 0.80 16 51 H 0.13 0.97 8.06 -52.48 -0.42 0.54 16 LS Contribution 401.62 15.07 6.05 6.05 Total: -1.00 -32.39 401.62 -10.79 -43.18 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -8.39 Total: 4.66 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -3.11 Total: -4.52 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: -0.40 Total: -57.02 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.08 Total: -9.37 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.39 -10.79 -43.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111804071.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.836 kcal (2) G-P(sol) polarization free energy of solvation -32.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds