Wall clock time and date at job start Wed Apr 1 2020 02:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38236 * 120.41916 * 2 1 4 4 N 1.31850 * 120.76401 * 180.02562 * 3 2 1 5 5 C 1.31884 * 121.72562 * 359.70749 * 4 3 2 6 6 C 1.38179 * 120.76736 * 0.58137 * 5 4 3 7 7 C 1.50704 * 120.42108 * 179.70491 * 6 5 4 8 8 C 1.52997 * 109.46903 * 269.72389 * 7 6 5 9 9 C 1.50704 * 109.46903 * 179.97438 * 8 7 6 10 10 O 1.21285 * 119.99983 * 359.97438 * 9 8 7 11 11 N 1.34772 * 120.00213 * 180.02562 * 9 8 7 12 12 C 1.46495 * 120.00287 * 180.02562 * 11 9 8 13 13 C 1.54329 * 111.69191 * 298.98436 * 12 11 9 14 14 C 1.55057 * 103.93591 * 262.78442 * 13 12 11 15 15 C 1.55049 * 102.11115 * 319.94729 * 14 13 12 16 16 C 1.54319 * 103.93912 * 40.06176 * 15 14 13 17 17 H 1.08991 * 111.69896 * 98.07085 * 16 15 14 18 18 C 1.53779 * 109.05698 * 222.03218 * 16 15 14 19 19 N 1.47214 * 106.38200 * 94.88064 * 18 16 15 20 20 C 1.36939 * 126.70119 * 211.32136 * 19 18 16 21 21 H 1.08001 * 119.99530 * 179.97438 * 20 19 18 22 22 C 1.38812 * 120.00272 * 359.97438 * 20 19 18 23 23 N 1.31621 * 119.99697 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00203 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46853 * 59.99467 * 24 22 20 26 26 H 1.48497 * 109.47082 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46943 * 299.99593 * 24 22 20 28 28 C 1.47206 * 106.59368 * 31.28393 * 19 18 16 29 29 C 1.38625 * 120.42266 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.46709 * 269.97397 * 1 2 3 31 31 H 1.08996 * 109.47057 * 29.97378 * 1 2 3 32 32 H 1.09002 * 109.47018 * 149.97941 * 1 2 3 33 33 H 1.07997 * 119.61571 * 0.04487 * 3 2 1 34 34 H 1.07997 * 119.62004 * 180.31091 * 5 4 3 35 35 H 1.08997 * 109.46737 * 149.72580 * 7 6 5 36 36 H 1.08998 * 109.47089 * 29.72412 * 7 6 5 37 37 H 1.08997 * 109.47268 * 60.00516 * 8 7 6 38 38 H 1.08998 * 109.47267 * 299.99914 * 8 7 6 39 39 H 0.97011 * 119.99749 * 359.97438 * 11 9 8 40 40 H 1.08994 * 110.53630 * 144.16463 * 13 12 11 41 41 H 1.08998 * 110.52869 * 21.39230 * 13 12 11 42 42 H 1.08998 * 110.90142 * 78.15239 * 14 13 12 43 43 H 1.09000 * 110.89991 * 201.74314 * 14 13 12 44 44 H 1.09005 * 110.53259 * 158.67741 * 15 14 13 45 45 H 1.09002 * 110.53474 * 281.29930 * 15 14 13 46 46 H 1.09006 * 110.07222 * 214.10438 * 18 16 15 47 47 H 1.08995 * 110.07679 * 335.59163 * 18 16 15 48 48 H 0.97001 * 119.99566 * 180.02562 * 23 22 20 49 49 H 1.09001 * 110.07637 * 87.94685 * 28 19 18 50 50 H 1.09006 * 110.07879 * 209.43134 * 28 19 18 51 51 H 1.08003 * 120.78979 * 359.95225 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1921 0.0000 4 7 3.5254 1.2000 -0.0005 5 6 4.2256 0.0824 0.0047 6 6 3.5949 -1.1470 -0.0011 7 6 4.4028 -2.4192 -0.0018 8 6 4.6756 -2.8492 -1.4445 9 6 5.4841 -4.1210 -1.4452 10 8 5.8103 -4.6328 -0.3951 11 7 5.8454 -4.6893 -2.6127 12 6 6.6308 -5.9259 -2.6133 13 6 7.9955 -5.7353 -1.9183 14 6 8.9790 -5.4815 -3.0899 15 6 8.4786 -6.4875 -4.1584 16 6 6.9411 -6.4088 -4.0519 17 1 6.5176 -5.7528 -4.8123 18 6 6.3585 -7.8293 -4.1376 19 7 6.1809 -8.2897 -2.7506 20 6 6.2732 -9.5788 -2.2980 21 1 6.1222 -9.7955 -1.2508 22 6 6.5606 -10.6070 -3.1852 23 7 6.7441 -10.3429 -4.4615 24 14 6.6872 -12.3654 -2.5676 25 1 5.3955 -12.7695 -1.9563 26 1 7.0002 -13.2680 -3.7045 27 1 7.7659 -12.4566 -1.5511 28 6 5.8857 -7.0934 -1.9452 29 6 2.2090 -1.1954 -0.0005 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3633 0.8902 -0.5134 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6675 2.1277 0.0007 34 1 5.3046 0.1286 0.0092 35 1 3.8465 -3.2031 0.5120 36 1 5.3491 -2.2489 0.5117 37 1 5.2319 -2.0653 -1.9583 38 1 3.7294 -3.0195 -1.9580 39 1 5.5847 -4.2797 -3.4526 40 1 8.2755 -6.6360 -1.3721 41 1 7.9671 -4.8748 -1.2498 42 1 8.8966 -4.4567 -3.4517 43 1 10.0034 -5.7067 -2.7932 44 1 8.8091 -6.1855 -5.1522 45 1 8.8290 -7.4940 -3.9296 46 1 5.3971 -7.8090 -4.6510 47 1 7.0501 -8.4862 -4.6651 48 1 6.9446 -11.0615 -5.0814 49 1 4.8130 -6.8997 -1.9422 50 1 6.2434 -7.2316 -0.9248 51 1 1.6889 -2.1419 -0.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111804071.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:19:15 Heat of formation + Delta-G solvation = -10.723373 kcal Electronic energy + Delta-G solvation = -30011.796466 eV Core-core repulsion = 26102.940737 eV Total energy + Delta-G solvation = -3908.855729 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.64980 -41.18644 -39.60134 -36.25839 -35.53625 -34.64723 -34.47094 -33.41768 -31.51194 -30.83372 -29.34652 -28.14768 -26.63039 -26.28607 -25.57483 -23.93910 -22.60699 -22.24059 -21.62317 -20.54955 -20.27421 -19.06318 -17.95045 -17.74610 -17.64416 -17.20594 -16.72801 -16.34866 -15.80377 -15.50035 -15.38491 -15.20030 -15.01920 -14.94526 -14.59616 -14.50960 -14.11876 -13.95156 -13.92909 -13.66288 -13.57008 -13.19053 -13.10606 -13.05236 -12.80916 -12.74118 -12.40802 -12.16054 -12.11055 -12.05297 -11.94139 -11.81504 -11.71339 -11.63589 -11.57173 -11.42385 -10.78500 -10.72245 -10.46606 -10.35716 -9.98306 -9.70102 -8.91862 -7.77010 -5.24878 0.15523 0.33868 1.44930 1.47779 1.54283 1.75301 2.21986 2.48797 2.84289 3.28864 3.44208 3.52339 3.68247 3.76520 3.84753 3.86138 3.90852 3.98395 4.07867 4.08660 4.21735 4.25558 4.40774 4.42931 4.48689 4.52525 4.61570 4.67871 4.72240 4.73874 4.79699 4.82785 4.89140 4.94113 4.97702 4.99732 5.05049 5.12075 5.17809 5.24018 5.24501 5.28759 5.34464 5.40315 5.41709 5.47211 5.62236 5.74855 5.82214 5.85344 6.37631 6.70110 7.04379 7.09445 7.40159 7.74565 8.41280 9.21293 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017637 B = 0.002239 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.233495 B =12501.978757 C =13340.252453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.135 4.135 3 C 0.078 3.922 4 N -0.506 5.506 5 C 0.082 3.918 6 C -0.125 4.125 7 C -0.054 4.054 8 C -0.121 4.121 9 C 0.507 3.493 10 O -0.576 6.576 11 N -0.702 5.702 12 C 0.172 3.828 13 C -0.108 4.108 14 C -0.110 4.110 15 C -0.106 4.106 16 C -0.103 4.103 17 H 0.106 0.894 18 C 0.139 3.861 19 N -0.613 5.613 20 C -0.239 4.239 21 H 0.071 0.929 22 C -0.060 4.060 23 N -0.942 5.942 24 Si 0.979 3.021 25 H -0.281 1.281 26 H -0.287 1.287 27 H -0.279 1.279 28 C 0.145 3.855 29 C -0.084 4.084 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.172 0.828 34 H 0.165 0.835 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.119 0.881 38 H 0.110 0.890 39 H 0.414 0.586 40 H 0.041 0.959 41 H 0.068 0.932 42 H 0.089 0.911 43 H 0.069 0.931 44 H 0.084 0.916 45 H 0.039 0.961 46 H -0.020 1.020 47 H 0.103 0.897 48 H 0.250 0.750 49 H 0.000 1.000 50 H 0.027 0.973 51 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.157 23.880 2.889 25.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.137 4.137 3 C -0.078 4.078 4 N -0.214 5.214 5 C -0.074 4.074 6 C -0.127 4.127 7 C -0.092 4.092 8 C -0.161 4.161 9 C 0.295 3.705 10 O -0.455 6.455 11 N -0.354 5.354 12 C 0.084 3.916 13 C -0.146 4.146 14 C -0.147 4.147 15 C -0.143 4.143 16 C -0.123 4.123 17 H 0.124 0.876 18 C 0.014 3.986 19 N -0.337 5.337 20 C -0.368 4.368 21 H 0.089 0.911 22 C -0.252 4.252 23 N -0.591 5.591 24 Si 0.807 3.193 25 H -0.208 1.208 26 H -0.213 1.213 27 H -0.205 1.205 28 C 0.017 3.983 29 C -0.110 4.110 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.189 0.811 34 H 0.182 0.818 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.137 0.863 38 H 0.128 0.872 39 H 0.252 0.748 40 H 0.060 0.940 41 H 0.087 0.913 42 H 0.108 0.892 43 H 0.088 0.912 44 H 0.103 0.897 45 H 0.058 0.942 46 H -0.002 1.002 47 H 0.120 0.880 48 H 0.060 0.940 49 H 0.017 0.983 50 H 0.045 0.955 51 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -6.448 24.093 3.558 25.194 hybrid contribution -0.674 -2.134 0.086 2.240 sum -7.122 21.959 3.644 23.371 Atomic orbital electron populations 1.20791 0.88304 1.04167 1.03400 1.21231 0.98996 0.93584 0.99885 1.23064 0.89720 0.98704 0.96361 1.67689 1.09385 1.31865 1.12467 1.22892 1.00993 0.87125 0.96428 1.20873 0.94766 0.96228 1.00847 1.20147 0.99960 0.93231 0.95907 1.21623 1.01374 0.94087 0.98979 1.21292 0.79446 0.86579 0.83138 1.90713 1.56610 1.65544 1.32678 1.45917 1.55002 1.25091 1.09398 1.21376 0.90911 0.83455 0.95820 1.22534 0.93731 1.00578 0.97794 1.22551 0.98176 0.99609 0.94349 1.22357 0.93413 0.98760 0.99809 1.22934 0.97378 0.97482 0.94538 0.87595 1.21912 0.97461 0.92891 0.86336 1.44670 1.82144 1.01943 1.04936 1.19323 1.40799 0.83136 0.93559 0.91083 1.25540 1.02207 1.01721 0.95764 1.69825 1.55744 1.31143 1.02396 0.85147 0.77961 0.79310 0.76868 1.20770 1.21309 1.20494 1.21533 0.95275 0.87359 0.94092 1.21714 0.93493 0.99217 0.96601 0.90128 0.89803 0.90682 0.81083 0.81802 0.91161 0.90325 0.86289 0.87217 0.74831 0.93968 0.91334 0.89247 0.91195 0.89728 0.94202 1.00230 0.87981 0.94005 0.98270 0.95481 0.83732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 10.04 71.24 0.72 -0.16 16 2 C -0.14 -1.86 5.90 -19.77 -0.12 -1.97 16 3 C 0.08 1.23 10.86 84.69 0.92 2.15 16 4 N -0.51 -10.02 10.36 -195.85 -2.03 -12.05 16 5 C 0.08 1.46 10.86 84.67 0.92 2.38 16 6 C -0.13 -2.09 5.15 -19.77 -0.10 -2.19 16 7 C -0.05 -0.97 4.66 29.85 0.14 -0.83 16 8 C -0.12 -1.98 5.68 29.85 0.17 -1.81 16 9 C 0.51 13.32 7.14 87.66 0.63 13.94 16 10 O -0.58 -20.39 13.97 -3.04 -0.04 -20.44 16 11 N -0.70 -18.30 5.22 -416.82 -2.17 -20.48 16 12 C 0.17 6.06 0.92 4.96 0.00 6.06 16 13 C -0.11 -3.72 5.51 31.75 0.17 -3.55 16 14 C -0.11 -3.06 6.92 32.00 0.22 -2.84 16 15 C -0.11 -3.47 6.23 31.74 0.20 -3.27 16 16 C -0.10 -3.65 3.66 -9.44 -0.03 -3.68 16 17 H 0.11 2.99 7.75 -2.39 -0.02 2.97 16 18 C 0.14 6.77 5.56 86.51 0.48 7.25 16 19 N -0.61 -32.74 3.39 -695.36 -2.36 -35.09 16 20 C -0.24 -13.93 10.34 84.03 0.87 -13.06 16 21 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 22 C -0.06 -3.40 5.49 84.86 0.47 -2.94 16 23 N -0.94 -55.29 10.08 21.65 0.22 -55.07 16 24 Si 0.98 46.26 29.55 68.60 2.03 48.29 16 25 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 26 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 27 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 28 C 0.14 6.68 5.31 86.51 0.46 7.14 16 29 C -0.08 -1.29 9.55 22.47 0.21 -1.07 16 30 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 31 H 0.08 0.46 8.09 -2.39 -0.02 0.44 16 32 H 0.07 0.55 8.10 -2.39 -0.02 0.53 16 33 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 34 H 0.16 2.38 8.06 -2.91 -0.02 2.35 16 35 H 0.07 1.46 8.05 -2.39 -0.02 1.44 16 36 H 0.08 1.52 8.05 -2.39 -0.02 1.50 16 37 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.41 7.78 8.32 -92.70 -0.77 7.01 16 40 H 0.04 1.74 7.56 -2.39 -0.02 1.72 16 41 H 0.07 2.30 6.64 -2.39 -0.02 2.28 16 42 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 45 H 0.04 1.64 7.57 -2.39 -0.02 1.62 16 46 H -0.02 -1.05 8.14 -2.38 -0.02 -1.07 16 47 H 0.10 5.58 4.89 -2.39 -0.01 5.57 16 48 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 49 H 0.00 -0.02 8.08 -2.39 -0.02 -0.04 16 50 H 0.03 1.35 7.56 -2.38 -0.02 1.33 16 51 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -74.38 401.62 2.12 -72.26 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: 0.15 Total: 21.05 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: 6.32 Total: 1.54 kcal Atomic # 7 Polarization: -116.35 SS G_CDS: -6.34 Total: -122.70 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.04 Total: -20.44 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -74.38 2.12 -72.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111804071.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.535 kcal (2) G-P(sol) polarization free energy of solvation -74.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds