Wall clock time and date at job start Wed Apr 1 2020 03:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38624 * 120.75457 * 2 1 4 4 C 1.38557 * 119.35047 * 179.97438 * 3 2 1 5 5 C 1.50711 * 119.54780 * 179.97438 * 4 3 2 6 6 N 1.31518 * 120.90928 * 0.02562 * 4 3 2 7 7 C 1.32717 * 121.63789 * 359.97256 * 6 4 3 8 8 C 1.48173 * 119.72483 * 179.97438 * 7 6 4 9 9 O 1.21511 * 120.00641 * 184.86930 * 8 7 6 10 10 N 1.34781 * 119.99650 * 4.87200 * 8 7 6 11 11 C 1.48115 * 127.84014 * 354.46631 * 10 8 7 12 12 C 1.54328 * 104.68882 * 219.76651 * 11 10 8 13 13 H 1.09002 * 111.85288 * 214.54901 * 12 11 10 14 14 C 1.54160 * 108.86609 * 89.54374 * 12 11 10 15 15 C 1.54838 * 104.33706 * 271.20491 * 14 12 11 16 16 C 1.57141 * 102.91009 * 321.70832 * 15 14 12 17 17 C 1.54160 * 103.23372 * 38.19568 * 16 15 14 18 18 C 1.53007 * 111.82077 * 213.14840 * 17 16 15 19 19 N 1.46501 * 109.46914 * 298.61459 * 18 17 16 20 20 C 1.36935 * 119.99336 * 179.72250 * 19 18 17 21 21 H 1.07995 * 120.00674 * 0.27915 * 20 19 18 22 22 C 1.38823 * 119.99597 * 180.27593 * 20 19 18 23 23 N 1.31619 * 119.99811 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99985 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46996 * 89.99893 * 24 22 20 26 26 H 1.48490 * 109.47262 * 210.00082 * 24 22 20 27 27 H 1.48500 * 109.47171 * 330.00684 * 24 22 20 28 28 C 1.48115 * 127.83886 * 174.49381 * 10 8 7 29 29 C 1.38596 * 120.75769 * 180.27998 * 2 1 3 30 30 H 1.08999 * 109.46837 * 89.99961 * 1 2 3 31 31 H 1.09004 * 109.46847 * 209.99572 * 1 2 3 32 32 H 1.08995 * 109.47184 * 329.99778 * 1 2 3 33 33 H 1.07998 * 120.32593 * 0.02562 * 3 2 1 34 34 H 1.09000 * 109.47200 * 270.02361 * 5 4 3 35 35 H 1.08998 * 109.46654 * 30.02426 * 5 4 3 36 36 H 1.09001 * 109.47136 * 150.02342 * 5 4 3 37 37 H 1.08997 * 110.39485 * 338.57391 * 11 10 8 38 38 H 1.08999 * 110.39411 * 100.85442 * 11 10 8 39 39 H 1.08999 * 110.46011 * 29.92152 * 14 12 11 40 40 H 1.09004 * 110.45981 * 152.48868 * 14 12 11 41 41 H 1.09004 * 110.75562 * 80.13800 * 15 14 12 42 42 H 1.09000 * 110.75818 * 203.33035 * 15 14 12 43 43 H 1.09003 * 111.51862 * 279.59200 * 16 15 14 44 44 H 1.09004 * 110.44854 * 156.28752 * 16 15 14 45 45 H 1.09001 * 109.46614 * 178.61639 * 18 17 16 46 46 H 1.08999 * 109.46682 * 58.61705 * 18 17 16 47 47 H 0.96994 * 120.00250 * 0.02562 * 19 18 17 48 48 H 0.96997 * 119.99686 * 179.97438 * 23 22 20 49 49 H 1.08992 * 110.39320 * 21.44449 * 28 10 8 50 50 H 1.09003 * 110.48775 * 259.10543 * 28 10 8 51 51 H 1.08000 * 120.46885 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.1913 0.0000 4 6 3.6010 1.1573 0.0005 5 6 4.3762 2.4498 0.0000 6 7 4.2488 0.0127 0.0005 7 6 3.6082 -1.1496 0.0006 8 6 4.3806 -2.4141 0.0000 9 8 3.8026 -3.4792 -0.0893 10 7 5.7245 -2.3829 0.0986 11 6 6.6079 -1.1941 0.1023 12 6 7.8293 -1.6115 -0.7436 13 1 8.7519 -1.1658 -0.3716 14 6 7.5566 -1.2607 -2.2198 15 6 6.8523 -2.5169 -2.7886 16 6 7.6153 -3.6963 -2.0843 17 6 7.8596 -3.1582 -0.6604 18 6 9.1765 -3.6732 -0.0760 19 7 9.1317 -5.1346 0.0157 20 6 10.2084 -5.8230 0.5074 21 1 11.0889 -5.2884 0.8319 22 6 10.1682 -7.2083 0.5890 23 7 9.0953 -7.8599 0.1931 24 14 11.6367 -8.1474 1.2605 25 1 11.4936 -8.3047 2.7302 26 1 11.7011 -9.4870 0.6231 27 1 12.8828 -7.3968 0.9621 28 6 6.6530 -3.5297 0.2272 29 6 2.2158 -1.1910 -0.0058 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8901 0.5138 32 1 -0.3633 0.8899 0.5138 33 1 1.6936 2.1366 0.0004 34 1 4.5631 2.7610 -1.0278 35 1 3.7997 3.2193 0.5134 36 1 5.3263 2.3039 0.5139 37 1 6.1021 -0.3435 -0.3546 38 1 6.9137 -0.9513 1.1200 39 1 6.9020 -0.3920 -2.2904 40 1 8.4928 -1.0772 -2.7470 41 1 5.7963 -2.5233 -2.5183 42 1 6.9730 -2.5708 -3.8706 43 1 8.5629 -3.9110 -2.5783 44 1 6.9903 -4.5888 -2.0522 45 1 9.3223 -3.2510 0.9183 46 1 10.0020 -3.3747 -0.7221 47 1 8.3411 -5.6148 -0.2761 48 1 9.0674 -8.8278 0.2497 49 1 6.1813 -4.4428 -0.1357 50 1 6.9674 -3.6517 1.2638 51 1 1.6959 -2.1376 -0.0109 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112441982.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:31 Heat of formation + Delta-G solvation = 13.275687 kcal Electronic energy + Delta-G solvation = -30936.396245 eV Core-core repulsion = 27028.581193 eV Total energy + Delta-G solvation = -3907.815051 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.07804 -40.11028 -38.20287 -34.91063 -34.43267 -33.89235 -32.98489 -31.59680 -29.74739 -29.15983 -28.36847 -27.84275 -26.11543 -25.21679 -24.17706 -23.13468 -22.01474 -21.53090 -19.99662 -19.62929 -18.56925 -17.50538 -16.95112 -16.47266 -16.27576 -15.97783 -15.50246 -15.15703 -14.51052 -14.34076 -14.19845 -14.04860 -13.71405 -13.56904 -13.35598 -13.21482 -13.09826 -12.98124 -12.94991 -12.76482 -12.61467 -12.46092 -12.35937 -12.09806 -11.80763 -11.41638 -11.11479 -10.80596 -10.64887 -10.63076 -10.53409 -10.49273 -10.25796 -10.16515 -10.12074 -9.85154 -9.83433 -9.59831 -9.35929 -9.26033 -8.82322 -8.37910 -6.86015 -5.70402 -2.99046 0.45043 0.88871 2.68810 2.99266 3.47377 3.52199 3.54136 3.65135 3.82075 4.21429 4.33066 4.58316 4.65419 4.69725 4.75385 4.82906 4.84346 4.97094 5.03108 5.13153 5.20747 5.25464 5.35229 5.43944 5.46622 5.47158 5.52764 5.62458 5.66337 5.68344 5.72552 5.77779 5.85582 5.89840 5.91671 6.04571 6.07626 6.11284 6.14103 6.26357 6.31816 6.37568 6.41646 6.47621 6.61286 6.67149 6.74058 6.84604 6.88182 7.49904 7.73396 7.75079 8.23456 8.48073 9.59387 10.17578 10.52406 11.52294 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.018552 B = 0.002684 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.878200 B =10430.836445 C =11089.802736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.045 4.045 3 C -0.157 4.157 4 C 0.126 3.874 5 C -0.104 4.104 6 N -0.457 5.457 7 C 0.101 3.899 8 C 0.584 3.416 9 O -0.535 6.535 10 N -0.594 5.594 11 C 0.097 3.903 12 C -0.100 4.100 13 H 0.092 0.908 14 C -0.111 4.111 15 C -0.122 4.122 16 C -0.103 4.103 17 C -0.075 4.075 18 C 0.173 3.827 19 N -0.730 5.730 20 C -0.239 4.239 21 H 0.070 0.930 22 C -0.014 4.014 23 N -0.932 5.932 24 Si 0.906 3.094 25 H -0.291 1.291 26 H -0.292 1.292 27 H -0.283 1.283 28 C 0.119 3.881 29 C -0.122 4.122 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.137 0.863 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.118 0.882 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.067 0.933 45 H 0.020 0.980 46 H 0.024 0.976 47 H 0.385 0.615 48 H 0.255 0.745 49 H 0.086 0.914 50 H 0.077 0.923 51 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.017 24.610 -2.788 28.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.053 4.053 3 C -0.177 4.177 4 C -0.013 4.013 5 C -0.161 4.161 6 N -0.170 5.170 7 C -0.037 4.037 8 C 0.370 3.630 9 O -0.412 6.412 10 N -0.325 5.325 11 C -0.026 4.026 12 C -0.119 4.119 13 H 0.110 0.890 14 C -0.148 4.148 15 C -0.160 4.160 16 C -0.140 4.140 17 C -0.077 4.077 18 C 0.045 3.955 19 N -0.375 5.375 20 C -0.370 4.370 21 H 0.088 0.912 22 C -0.210 4.210 23 N -0.580 5.580 24 Si 0.737 3.263 25 H -0.218 1.218 26 H -0.219 1.219 27 H -0.208 1.208 28 C -0.003 4.003 29 C -0.143 4.143 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.155 0.845 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.136 0.864 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.038 0.962 46 H 0.041 0.959 47 H 0.219 0.781 48 H 0.065 0.935 49 H 0.104 0.896 50 H 0.095 0.905 51 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -14.367 23.946 -2.763 28.062 hybrid contribution -0.305 -0.824 0.381 0.958 sum -14.671 23.122 -2.382 27.487 Atomic orbital electron populations 1.20840 0.89678 1.03611 1.03159 1.20343 0.97099 0.92497 0.95329 1.22028 0.94802 0.98788 1.02092 1.21393 0.91237 0.94009 0.94702 1.20740 1.00480 0.91567 1.03337 1.67564 1.39846 0.97563 1.11994 1.21164 0.91557 0.91983 0.99043 1.17390 0.80670 0.87253 0.77640 1.90810 1.69062 1.30291 1.51051 1.48711 1.04186 1.10310 1.69315 1.22997 0.89809 0.89692 1.00095 1.22739 0.98009 0.95365 0.95823 0.88962 1.22322 0.99995 0.97613 0.94889 1.22835 0.99184 0.95041 0.98930 1.22734 1.00297 0.97117 0.93855 1.22267 0.95611 0.93815 0.95967 1.20604 0.91946 0.86367 0.96569 1.42350 1.18525 0.99664 1.76935 1.19207 0.94565 0.89214 1.33999 0.91250 1.24735 0.97556 0.96458 1.02217 1.69662 1.27857 1.07170 1.53322 0.86209 0.82135 0.79460 0.78494 1.21810 1.21851 1.20838 1.22549 0.88089 0.89327 1.00312 1.21999 0.93760 0.99614 0.98926 0.90258 0.90644 0.90844 0.84513 0.90180 0.90617 0.90075 0.86446 0.91879 0.92012 0.91707 0.92264 0.92319 0.90848 0.91436 0.96228 0.95863 0.78119 0.93537 0.89588 0.90488 0.83494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.65 10.06 36.01 0.36 -0.29 16 2 C -0.04 -0.39 5.91 -104.35 -0.62 -1.01 16 3 C -0.16 -1.21 9.45 -39.32 -0.37 -1.59 16 4 C 0.13 1.14 6.78 -82.60 -0.56 0.58 16 5 C -0.10 -0.60 10.17 36.01 0.37 -0.23 16 6 N -0.46 -5.37 6.58 -6.06 -0.04 -5.41 16 7 C 0.10 1.37 6.73 -83.01 -0.56 0.81 16 8 C 0.58 9.74 7.85 -12.18 -0.10 9.64 16 9 O -0.54 -10.59 16.58 5.36 0.09 -10.50 16 10 N -0.59 -9.42 2.53 -170.42 -0.43 -9.86 16 11 C 0.10 1.27 5.87 -2.46 -0.01 1.25 16 12 C -0.10 -1.33 3.62 -88.30 -0.32 -1.65 16 13 H 0.09 1.13 7.88 -51.93 -0.41 0.72 16 14 C -0.11 -1.36 6.28 -25.16 -0.16 -1.52 16 15 C -0.12 -1.74 6.57 -23.51 -0.15 -1.90 16 16 C -0.10 -1.74 5.50 -23.88 -0.13 -1.87 16 17 C -0.08 -1.26 0.67 -152.19 -0.10 -1.36 16 18 C 0.17 3.46 5.10 -4.04 -0.02 3.44 16 19 N -0.73 -18.46 5.23 -59.90 -0.31 -18.77 16 20 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 21 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 22 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 23 N -0.93 -28.66 13.06 55.49 0.72 -27.94 16 24 Si 0.91 22.75 29.55 -169.99 -5.02 17.73 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 27 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 28 C 0.12 2.13 5.54 -2.46 -0.01 2.12 16 29 C -0.12 -1.42 9.34 -39.05 -0.36 -1.78 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 32 H 0.07 0.30 8.10 -51.93 -0.42 -0.12 16 33 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 34 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.12 1.43 4.62 -51.93 -0.24 1.19 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.69 7.45 -51.93 -0.39 0.31 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.92 7.66 -51.93 -0.40 0.53 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.07 1.31 7.96 -51.93 -0.41 0.89 16 44 H 0.07 1.27 7.42 -51.93 -0.39 0.89 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.38 10.33 7.06 -40.82 -0.29 10.05 16 48 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 49 H 0.09 1.75 7.12 -51.93 -0.37 1.38 16 50 H 0.08 1.46 7.95 -51.93 -0.41 1.04 16 51 H 0.15 1.70 7.65 -52.49 -0.40 1.30 16 LS Contribution 402.15 15.07 6.06 6.06 Total: -1.00 -33.43 402.15 -10.25 -43.67 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -8.32 Total: 7.71 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -3.00 Total: -2.69 kcal Atomic # 7 Polarization: -61.92 SS G_CDS: -0.06 Total: -61.98 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.09 Total: -10.50 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.43 -10.25 -43.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112441982.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.950 kcal (2) G-P(sol) polarization free energy of solvation -33.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds