Wall clock time and date at job start Wed Apr 1 2020 03:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38624 * 120.75457 * 2 1 4 4 C 1.38557 * 119.35047 * 179.97438 * 3 2 1 5 5 C 1.50711 * 119.54780 * 179.97438 * 4 3 2 6 6 N 1.31518 * 120.90928 * 0.02562 * 4 3 2 7 7 C 1.32717 * 121.63789 * 359.97256 * 6 4 3 8 8 C 1.48173 * 119.72483 * 179.97438 * 7 6 4 9 9 O 1.21511 * 120.00641 * 184.86930 * 8 7 6 10 10 N 1.34781 * 119.99650 * 4.87200 * 8 7 6 11 11 C 1.48115 * 127.84014 * 354.46631 * 10 8 7 12 12 C 1.54328 * 104.68882 * 219.76651 * 11 10 8 13 13 H 1.09002 * 111.85288 * 214.54901 * 12 11 10 14 14 C 1.54160 * 108.86609 * 89.54374 * 12 11 10 15 15 C 1.54838 * 104.33706 * 271.20491 * 14 12 11 16 16 C 1.57141 * 102.91009 * 321.70832 * 15 14 12 17 17 C 1.54160 * 103.23372 * 38.19568 * 16 15 14 18 18 C 1.53007 * 111.82077 * 213.14840 * 17 16 15 19 19 N 1.46501 * 109.46914 * 298.61459 * 18 17 16 20 20 C 1.36935 * 119.99336 * 179.72250 * 19 18 17 21 21 H 1.07995 * 120.00674 * 0.27915 * 20 19 18 22 22 C 1.38823 * 119.99597 * 180.27593 * 20 19 18 23 23 N 1.31619 * 119.99811 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99985 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46996 * 89.99893 * 24 22 20 26 26 H 1.48490 * 109.47262 * 210.00082 * 24 22 20 27 27 H 1.48500 * 109.47171 * 330.00684 * 24 22 20 28 28 C 1.48115 * 127.83886 * 174.49381 * 10 8 7 29 29 C 1.38596 * 120.75769 * 180.27998 * 2 1 3 30 30 H 1.08999 * 109.46837 * 89.99961 * 1 2 3 31 31 H 1.09004 * 109.46847 * 209.99572 * 1 2 3 32 32 H 1.08995 * 109.47184 * 329.99778 * 1 2 3 33 33 H 1.07998 * 120.32593 * 0.02562 * 3 2 1 34 34 H 1.09000 * 109.47200 * 270.02361 * 5 4 3 35 35 H 1.08998 * 109.46654 * 30.02426 * 5 4 3 36 36 H 1.09001 * 109.47136 * 150.02342 * 5 4 3 37 37 H 1.08997 * 110.39485 * 338.57391 * 11 10 8 38 38 H 1.08999 * 110.39411 * 100.85442 * 11 10 8 39 39 H 1.08999 * 110.46011 * 29.92152 * 14 12 11 40 40 H 1.09004 * 110.45981 * 152.48868 * 14 12 11 41 41 H 1.09004 * 110.75562 * 80.13800 * 15 14 12 42 42 H 1.09000 * 110.75818 * 203.33035 * 15 14 12 43 43 H 1.09003 * 111.51862 * 279.59200 * 16 15 14 44 44 H 1.09004 * 110.44854 * 156.28752 * 16 15 14 45 45 H 1.09001 * 109.46614 * 178.61639 * 18 17 16 46 46 H 1.08999 * 109.46682 * 58.61705 * 18 17 16 47 47 H 0.96994 * 120.00250 * 0.02562 * 19 18 17 48 48 H 0.96997 * 119.99686 * 179.97438 * 23 22 20 49 49 H 1.08992 * 110.39320 * 21.44449 * 28 10 8 50 50 H 1.09003 * 110.48775 * 259.10543 * 28 10 8 51 51 H 1.08000 * 120.46885 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.1913 0.0000 4 6 3.6010 1.1573 0.0005 5 6 4.3762 2.4498 0.0000 6 7 4.2488 0.0127 0.0005 7 6 3.6082 -1.1496 0.0006 8 6 4.3806 -2.4141 0.0000 9 8 3.8026 -3.4792 -0.0893 10 7 5.7245 -2.3829 0.0986 11 6 6.6079 -1.1941 0.1023 12 6 7.8293 -1.6115 -0.7436 13 1 8.7519 -1.1658 -0.3716 14 6 7.5566 -1.2607 -2.2198 15 6 6.8523 -2.5169 -2.7886 16 6 7.6153 -3.6963 -2.0843 17 6 7.8596 -3.1582 -0.6604 18 6 9.1765 -3.6732 -0.0760 19 7 9.1317 -5.1346 0.0157 20 6 10.2084 -5.8230 0.5074 21 1 11.0889 -5.2884 0.8319 22 6 10.1682 -7.2083 0.5890 23 7 9.0953 -7.8599 0.1931 24 14 11.6367 -8.1474 1.2605 25 1 11.4936 -8.3047 2.7302 26 1 11.7011 -9.4870 0.6231 27 1 12.8828 -7.3968 0.9621 28 6 6.6530 -3.5297 0.2272 29 6 2.2158 -1.1910 -0.0058 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8901 0.5138 32 1 -0.3633 0.8899 0.5138 33 1 1.6936 2.1366 0.0004 34 1 4.5631 2.7610 -1.0278 35 1 3.7997 3.2193 0.5134 36 1 5.3263 2.3039 0.5139 37 1 6.1021 -0.3435 -0.3546 38 1 6.9137 -0.9513 1.1200 39 1 6.9020 -0.3920 -2.2904 40 1 8.4928 -1.0772 -2.7470 41 1 5.7963 -2.5233 -2.5183 42 1 6.9730 -2.5708 -3.8706 43 1 8.5629 -3.9110 -2.5783 44 1 6.9903 -4.5888 -2.0522 45 1 9.3223 -3.2510 0.9183 46 1 10.0020 -3.3747 -0.7221 47 1 8.3411 -5.6148 -0.2761 48 1 9.0674 -8.8278 0.2497 49 1 6.1813 -4.4428 -0.1357 50 1 6.9674 -3.6517 1.2638 51 1 1.6959 -2.1376 -0.0109 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112441982.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:30 Heat of formation + Delta-G solvation = -6.249329 kcal Electronic energy + Delta-G solvation = -30937.242913 eV Core-core repulsion = 27028.581193 eV Total energy + Delta-G solvation = -3908.661720 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.13436 -41.15791 -39.49114 -36.52979 -35.57388 -34.99187 -33.78694 -33.43656 -31.16014 -30.66887 -29.02595 -28.39781 -27.57303 -26.50253 -25.73395 -24.44517 -23.58383 -22.20000 -21.19576 -20.77893 -19.99379 -19.10839 -18.33759 -17.55953 -17.31680 -16.93032 -16.71989 -16.54139 -16.05820 -15.63594 -15.26060 -15.16783 -15.01375 -14.90732 -14.69502 -14.29172 -14.12302 -14.08922 -14.02591 -13.80069 -13.47749 -13.29906 -13.06771 -13.02941 -13.00731 -12.89357 -12.72207 -12.54939 -12.17972 -12.07338 -11.85740 -11.80135 -11.74831 -11.55955 -11.54910 -11.48467 -11.29831 -10.92233 -10.51529 -10.29384 -10.07011 -9.66001 -8.98327 -7.93384 -5.22363 -0.40770 0.17530 1.46186 1.48567 1.56952 1.61069 1.77860 2.56186 2.75303 2.93233 3.33496 3.39756 3.51384 3.58934 3.62674 3.67008 3.97109 4.01661 4.17178 4.18307 4.21978 4.25076 4.32060 4.40279 4.46379 4.51391 4.61223 4.65595 4.69980 4.71427 4.72511 4.76432 4.78040 4.90577 4.92744 4.97406 5.01464 5.04294 5.09060 5.12448 5.18996 5.23458 5.28171 5.30272 5.32122 5.34888 5.43060 5.48224 5.51341 5.72235 6.27705 6.45886 6.68493 7.00632 7.34006 8.10686 8.33403 9.30431 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.018552 B = 0.002684 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.878200 B =10430.836445 C =11089.802736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.044 4.044 3 C -0.141 4.141 4 C 0.120 3.880 5 C -0.101 4.101 6 N -0.469 5.469 7 C 0.074 3.926 8 C 0.576 3.424 9 O -0.584 6.584 10 N -0.593 5.593 11 C 0.100 3.900 12 C -0.091 4.091 13 H 0.116 0.884 14 C -0.100 4.100 15 C -0.114 4.114 16 C -0.103 4.103 17 C -0.068 4.068 18 C 0.173 3.827 19 N -0.744 5.744 20 C -0.240 4.240 21 H 0.080 0.920 22 C -0.080 4.080 23 N -0.973 5.973 24 Si 0.975 3.025 25 H -0.289 1.289 26 H -0.298 1.298 27 H -0.266 1.266 28 C 0.124 3.876 29 C -0.137 4.137 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.179 0.821 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.077 0.923 37 H 0.136 0.864 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.040 0.960 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.032 0.968 45 H 0.026 0.974 46 H 0.033 0.967 47 H 0.372 0.628 48 H 0.249 0.751 49 H 0.046 0.954 50 H 0.061 0.939 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.823 29.555 -2.932 33.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.051 4.051 3 C -0.161 4.161 4 C -0.020 4.020 5 C -0.158 4.158 6 N -0.182 5.182 7 C -0.063 4.063 8 C 0.365 3.635 9 O -0.465 6.465 10 N -0.323 5.323 11 C -0.021 4.021 12 C -0.110 4.110 13 H 0.134 0.866 14 C -0.137 4.137 15 C -0.152 4.152 16 C -0.141 4.141 17 C -0.069 4.069 18 C 0.047 3.953 19 N -0.386 5.386 20 C -0.372 4.372 21 H 0.098 0.902 22 C -0.272 4.272 23 N -0.624 5.624 24 Si 0.804 3.196 25 H -0.216 1.216 26 H -0.225 1.225 27 H -0.190 1.190 28 C 0.001 3.999 29 C -0.158 4.158 30 H 0.109 0.891 31 H 0.090 0.910 32 H 0.116 0.884 33 H 0.196 0.804 34 H 0.112 0.888 35 H 0.120 0.880 36 H 0.096 0.904 37 H 0.153 0.847 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.059 0.941 42 H 0.092 0.908 43 H 0.084 0.916 44 H 0.051 0.949 45 H 0.044 0.956 46 H 0.051 0.949 47 H 0.203 0.797 48 H 0.058 0.942 49 H 0.065 0.935 50 H 0.079 0.921 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -14.138 28.964 -2.901 32.361 hybrid contribution -0.456 -2.248 0.439 2.335 sum -14.593 26.716 -2.463 30.542 Atomic orbital electron populations 1.20925 0.87340 1.04686 1.04161 1.20701 0.98711 0.91646 0.94082 1.22509 0.94436 0.99911 0.99215 1.22083 0.92435 0.94108 0.93419 1.20864 1.00300 0.90173 1.04501 1.67424 1.40345 0.97667 1.12803 1.20669 0.91774 0.91267 1.02550 1.18070 0.80793 0.88196 0.76478 1.90762 1.70006 1.32463 1.53268 1.48774 1.04212 1.10377 1.68952 1.23193 0.89182 0.88924 1.00808 1.22797 0.99142 0.91974 0.97095 0.86583 1.22314 1.00982 0.96856 0.93591 1.22762 0.97886 0.94888 0.99641 1.22655 0.99585 0.97168 0.94643 1.22146 0.93179 0.96667 0.94953 1.20764 0.93934 0.83473 0.97147 1.42580 1.17445 1.01906 1.76664 1.19667 0.95251 0.89705 1.32535 0.90221 1.25605 1.00403 0.97632 1.03531 1.69850 1.30168 1.06912 1.55466 0.85115 0.79367 0.77658 0.77481 1.21598 1.22488 1.19036 1.22259 0.89124 0.89102 0.99392 1.22037 0.93272 1.00590 0.99934 0.89145 0.91016 0.88371 0.80412 0.88847 0.87994 0.90397 0.84695 0.91093 0.89860 0.89821 0.94065 0.90821 0.91616 0.94944 0.95592 0.94898 0.79658 0.94206 0.93530 0.92072 0.84967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.06 71.24 0.72 -0.26 16 2 C -0.04 -0.67 5.91 -19.69 -0.12 -0.78 16 3 C -0.14 -1.62 9.45 22.44 0.21 -1.41 16 4 C 0.12 1.77 6.78 42.69 0.29 2.06 16 5 C -0.10 -0.71 10.17 71.24 0.72 0.01 16 6 N -0.47 -10.32 6.58 -173.08 -1.14 -11.46 16 7 C 0.07 2.05 6.73 41.91 0.28 2.33 16 8 C 0.58 20.63 7.85 86.88 0.68 21.32 16 9 O -0.58 -25.62 16.58 -3.75 -0.06 -25.68 16 10 N -0.59 -19.78 2.53 -811.38 -2.05 -21.83 16 11 C 0.10 2.52 5.87 86.52 0.51 3.02 16 12 C -0.09 -2.24 3.62 -9.29 -0.03 -2.28 16 13 H 0.12 2.42 7.88 -2.39 -0.02 2.40 16 14 C -0.10 -2.18 6.28 31.61 0.20 -1.98 16 15 C -0.11 -3.23 6.57 32.68 0.21 -3.01 16 16 C -0.10 -3.66 5.50 32.44 0.18 -3.48 16 17 C -0.07 -2.33 0.67 -50.68 -0.03 -2.37 16 18 C 0.17 6.99 5.10 86.38 0.44 7.43 16 19 N -0.74 -39.01 5.23 -343.43 -1.79 -40.81 16 20 C -0.24 -13.69 9.99 84.04 0.84 -12.85 16 21 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 22 C -0.08 -4.75 5.50 84.86 0.47 -4.28 16 23 N -0.97 -62.43 13.06 21.66 0.28 -62.15 16 24 Si 0.97 47.61 29.55 68.60 2.03 49.64 16 25 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 26 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 27 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 28 C 0.12 4.83 5.54 86.52 0.48 5.30 16 29 C -0.14 -3.25 9.34 22.61 0.21 -3.04 16 30 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.07 0.68 8.10 -2.38 -0.02 0.66 16 32 H 0.10 0.38 8.10 -2.39 -0.02 0.36 16 33 H 0.18 0.59 8.06 -2.91 -0.02 0.57 16 34 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.10 0.21 8.08 -2.39 -0.02 0.19 16 36 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.14 2.98 4.62 -2.39 -0.01 2.97 16 38 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.08 1.53 7.45 -2.39 -0.02 1.52 16 40 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 41 H 0.04 1.32 7.66 -2.38 -0.02 1.30 16 42 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.07 2.41 7.96 -2.39 -0.02 2.39 16 44 H 0.03 1.35 7.42 -2.38 -0.02 1.33 16 45 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.37 21.33 7.06 -92.71 -0.65 20.67 16 48 H 0.25 15.54 8.31 -92.71 -0.77 14.77 16 49 H 0.05 2.15 7.12 -2.39 -0.02 2.13 16 50 H 0.06 2.51 7.95 -2.39 -0.02 2.50 16 51 H 0.13 3.39 7.65 -2.91 -0.02 3.37 16 Total: -1.00 -78.53 402.15 3.80 -74.73 By element: Atomic # 1 Polarization: 31.56 SS G_CDS: 0.27 Total: 31.83 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 6.26 Total: 5.72 kcal Atomic # 7 Polarization: -131.54 SS G_CDS: -4.70 Total: -136.24 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.06 Total: -25.68 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 2.03 Total: 49.64 kcal Total: -78.53 3.80 -74.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112441982.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.484 kcal (2) G-P(sol) polarization free energy of solvation -78.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds