Wall clock time and date at job start Wed Apr 1 2020 02:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38606 * 120.32646 * 2 1 4 4 N 1.31492 * 120.90160 * 179.72222 * 3 2 1 5 5 C 1.32745 * 121.64276 * 0.52075 * 4 3 2 6 6 C 1.48169 * 119.72238 * 179.75289 * 5 4 3 7 7 O 1.21509 * 120.00148 * 104.22063 * 6 5 4 8 8 N 1.34781 * 119.99944 * 284.21928 * 6 5 4 9 9 C 1.48118 * 127.84240 * 355.05064 * 8 6 5 10 10 C 1.54332 * 104.69485 * 219.72322 * 9 8 6 11 11 H 1.08997 * 111.85192 * 214.57992 * 10 9 8 12 12 C 1.54164 * 109.65973 * 89.92945 * 10 9 8 13 13 C 1.53961 * 104.75006 * 224.70691 * 12 10 9 14 14 C 1.54839 * 103.15440 * 37.00379 * 13 12 10 15 15 C 1.54171 * 104.32583 * 322.50729 * 14 13 12 16 16 C 1.53000 * 111.82108 * 261.25711 * 15 14 13 17 17 N 1.46500 * 109.46845 * 299.25345 * 16 15 14 18 18 C 1.36938 * 119.99996 * 180.02562 * 17 16 15 19 19 H 1.07996 * 119.99690 * 0.02562 * 18 17 16 20 20 C 1.38816 * 120.00097 * 179.97438 * 18 17 16 21 21 N 1.31611 * 119.99788 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99713 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47358 * 60.00118 * 22 20 18 24 24 H 1.48506 * 109.46764 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47158 * 300.00114 * 22 20 18 26 26 C 1.48114 * 127.84152 * 175.03083 * 8 6 5 27 27 C 1.39271 * 120.55634 * 359.48105 * 5 4 3 28 28 C 1.50701 * 120.47171 * 180.27256 * 27 5 4 29 29 C 1.38590 * 120.32548 * 179.97438 * 2 1 3 30 30 H 1.09009 * 109.46715 * 270.02596 * 1 2 3 31 31 H 1.09000 * 109.46802 * 30.02257 * 1 2 3 32 32 H 1.08999 * 109.47283 * 150.02576 * 1 2 3 33 33 H 1.08000 * 119.54650 * 359.97438 * 3 2 1 34 34 H 1.08997 * 110.39221 * 100.92377 * 9 8 6 35 35 H 1.08999 * 110.39613 * 338.53142 * 9 8 6 36 36 H 1.09002 * 110.45989 * 342.13511 * 12 10 9 37 37 H 1.08995 * 110.46086 * 104.71027 * 12 10 9 38 38 H 1.08994 * 109.95865 * 278.82837 * 13 12 10 39 39 H 1.08999 * 111.15746 * 155.73541 * 13 12 10 40 40 H 1.08997 * 110.46448 * 203.80274 * 14 13 12 41 41 H 1.08997 * 110.46661 * 81.21920 * 14 13 12 42 42 H 1.08992 * 109.47541 * 59.25332 * 16 15 14 43 43 H 1.09001 * 109.46725 * 179.25676 * 16 15 14 44 44 H 0.97002 * 120.00426 * 0.02562 * 17 16 15 45 45 H 0.97006 * 119.99969 * 179.97438 * 21 20 18 46 46 H 1.08997 * 110.39566 * 21.46860 * 26 8 6 47 47 H 1.08999 * 110.39281 * 259.07425 * 26 8 6 48 48 H 1.09000 * 109.46553 * 94.78907 * 28 27 5 49 49 H 1.08999 * 109.46928 * 214.78541 * 28 27 5 50 50 H 1.08997 * 109.46780 * 334.79004 * 28 27 5 51 51 H 1.08001 * 120.74914 * 0.04515 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1964 0.0000 4 7 3.5217 1.2096 0.0055 5 6 4.2294 0.0866 0.0009 6 6 5.7097 0.1511 0.0018 7 8 6.3275 -0.0851 1.0211 8 7 6.3710 0.4718 -1.1280 9 6 5.8069 0.6919 -2.4797 10 6 6.8227 0.0369 -3.4393 11 1 6.9028 0.5825 -4.3795 12 6 6.4451 -1.4407 -3.6645 13 6 7.7752 -2.2074 -3.5479 14 6 8.5220 -1.4483 -2.4238 15 6 8.1603 0.0320 -2.6577 16 6 9.2651 0.7752 -3.4115 17 7 10.5018 0.7377 -2.6270 18 6 11.6340 1.3423 -3.1044 19 1 11.6150 1.8471 -4.0589 20 6 12.8057 1.3072 -2.3608 21 7 12.8286 0.6924 -1.1974 22 14 14.3498 2.1326 -3.0117 23 1 14.0918 3.5820 -3.2066 24 1 15.4556 1.9528 -2.0369 25 1 14.7298 1.5187 -4.3094 26 6 7.8267 0.6846 -1.2995 27 6 3.5923 -1.1519 0.0009 28 6 4.3977 -2.4256 0.0019 29 6 2.2067 -1.1963 0.0005 30 1 -0.3633 0.0005 1.0278 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3634 -0.8902 -0.5134 33 1 1.6648 2.1305 -0.0004 34 1 5.7221 1.7586 -2.6868 35 1 4.8340 0.2084 -2.5687 36 1 5.7650 -1.7834 -2.8847 37 1 5.9957 -1.5734 -4.6486 38 1 8.3244 -2.1447 -4.4873 39 1 7.6068 -3.2468 -3.2663 40 1 9.5981 -1.5963 -2.5139 41 1 8.1720 -1.7760 -1.4450 42 1 9.4321 0.2963 -4.3762 43 1 8.9648 1.8114 -3.5672 44 1 10.5187 0.2846 -1.7695 45 1 13.6475 0.6676 -0.6779 46 1 8.3792 0.1956 -0.4973 47 1 8.0545 1.7502 -1.3241 48 1 4.5186 -2.7781 1.0263 49 1 3.8789 -3.1840 -0.5844 50 1 5.3780 -2.2359 -0.4352 51 1 1.6844 -2.1416 0.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112484288.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:27 Heat of formation + Delta-G solvation = 4.735662 kcal Electronic energy + Delta-G solvation = -31038.416156 eV Core-core repulsion = 27130.230781 eV Total energy + Delta-G solvation = -3908.185375 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.10821 -40.17328 -38.27254 -34.85921 -34.22110 -33.94217 -33.92948 -31.63875 -29.86248 -29.48363 -28.00266 -27.77765 -25.59944 -25.39821 -24.04496 -23.29167 -22.27696 -21.71091 -20.20750 -19.84671 -18.65811 -17.61975 -17.26982 -16.81199 -16.15154 -15.68693 -15.00955 -14.79381 -14.70512 -14.58606 -14.49786 -14.38668 -13.62693 -13.59198 -13.50126 -13.35412 -13.23264 -13.04967 -12.86411 -12.79273 -12.73871 -12.63336 -12.39409 -11.97798 -11.89002 -11.42958 -11.12473 -10.90160 -10.80388 -10.73787 -10.52537 -10.50229 -10.40793 -10.20571 -10.19412 -9.94702 -9.92194 -9.64286 -9.57653 -9.05958 -8.84587 -8.55559 -6.88690 -5.72336 -3.01339 0.58516 0.92492 2.49944 2.88875 3.37578 3.46756 3.51120 3.52349 4.06220 4.26952 4.35170 4.47201 4.55533 4.60259 4.61123 4.68598 4.75470 4.81960 5.03391 5.12436 5.19437 5.25361 5.35318 5.38667 5.40433 5.40881 5.45801 5.50323 5.60382 5.65759 5.66820 5.71477 5.77759 5.80726 5.81769 5.87531 5.94765 5.98648 6.07783 6.18071 6.22615 6.26677 6.30830 6.39577 6.52725 6.56854 6.74337 6.79041 6.84000 7.56655 7.59378 7.72817 8.11893 8.45994 9.57332 10.14628 10.49317 11.50182 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.019697 B = 0.002675 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.159478 B =10464.102471 C =10819.976884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.124 4.124 3 C 0.094 3.906 4 N -0.448 5.448 5 C 0.094 3.906 6 C 0.598 3.402 7 O -0.525 6.525 8 N -0.605 5.605 9 C 0.111 3.889 10 C -0.099 4.099 11 H 0.095 0.905 12 C -0.114 4.114 13 C -0.121 4.121 14 C -0.112 4.112 15 C -0.073 4.073 16 C 0.175 3.825 17 N -0.730 5.730 18 C -0.240 4.240 19 H 0.069 0.931 20 C -0.012 4.012 21 N -0.931 5.931 22 Si 0.906 3.094 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.287 1.287 26 C 0.120 3.880 27 C -0.093 4.093 28 C -0.117 4.117 29 C -0.081 4.081 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.160 0.840 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.084 0.916 41 H 0.060 0.940 42 H 0.025 0.975 43 H 0.021 0.979 44 H 0.385 0.615 45 H 0.256 0.744 46 H 0.089 0.911 47 H 0.079 0.921 48 H 0.082 0.918 49 H 0.074 0.926 50 H 0.072 0.928 51 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.400 -5.869 -2.264 28.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.126 4.126 3 C -0.065 4.065 4 N -0.157 5.157 5 C -0.045 4.045 6 C 0.383 3.617 7 O -0.400 6.400 8 N -0.338 5.338 9 C -0.012 4.012 10 C -0.118 4.118 11 H 0.114 0.886 12 C -0.151 4.151 13 C -0.158 4.158 14 C -0.149 4.149 15 C -0.074 4.074 16 C 0.047 3.953 17 N -0.375 5.375 18 C -0.372 4.372 19 H 0.087 0.913 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.213 1.213 26 C -0.001 4.001 27 C -0.095 4.095 28 C -0.174 4.174 29 C -0.107 4.107 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.178 0.822 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.103 0.897 41 H 0.079 0.921 42 H 0.043 0.957 43 H 0.039 0.961 44 H 0.219 0.781 45 H 0.066 0.934 46 H 0.107 0.893 47 H 0.097 0.903 48 H 0.100 0.900 49 H 0.093 0.907 50 H 0.091 0.909 51 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -26.511 -5.127 -1.683 27.055 hybrid contribution 0.358 -0.312 -0.012 0.475 sum -26.154 -5.439 -1.695 26.767 Atomic orbital electron populations 1.20753 0.89844 1.03357 1.02840 1.21111 0.97778 0.94051 0.99683 1.22712 0.89227 0.97716 0.96890 1.67626 1.08398 1.29673 1.10027 1.20907 0.94178 0.89271 1.00159 1.17336 0.85194 0.76658 0.82468 1.90839 1.67941 1.49477 1.31757 1.48823 1.09538 1.67376 1.08020 1.22418 0.96746 1.00619 0.81386 1.22755 0.94240 0.96566 0.98287 0.88646 1.22226 0.97892 0.94140 1.00858 1.22299 0.95718 0.98342 0.99470 1.22446 1.01891 0.92814 0.97798 1.22273 0.94490 0.96518 0.94146 1.20543 0.85449 0.95850 0.93477 1.42362 1.05881 1.66599 1.22644 1.19147 0.88310 1.27377 1.02321 0.91294 1.24730 0.97985 1.01235 0.96900 1.69647 1.27421 1.47783 1.13125 0.86287 0.83147 0.79189 0.77647 1.21321 1.21751 1.21347 1.22494 0.78600 1.01286 0.97723 1.20821 0.94551 0.95741 0.98422 1.20834 0.99673 0.93396 1.03462 1.21335 0.92735 0.98543 0.98037 0.90613 0.90887 0.91138 0.82234 0.90808 0.91090 0.92298 0.91743 0.91469 0.92016 0.89729 0.92137 0.95742 0.96138 0.78061 0.93443 0.89307 0.90310 0.89971 0.90682 0.90897 0.84254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.49 10.03 36.01 0.36 -0.13 16 2 C -0.12 -0.98 5.91 -104.36 -0.62 -1.60 16 3 C 0.09 0.92 10.86 -17.56 -0.19 0.73 16 4 N -0.45 -6.04 10.29 -9.80 -0.10 -6.14 16 5 C 0.09 1.32 5.46 -83.01 -0.45 0.87 16 6 C 0.60 10.01 5.92 -12.18 -0.07 9.94 16 7 O -0.53 -10.72 17.35 5.36 0.09 -10.63 16 8 N -0.60 -9.31 3.31 -170.42 -0.56 -9.87 16 9 C 0.11 1.38 6.20 -2.45 -0.02 1.37 16 10 C -0.10 -1.22 3.53 -88.30 -0.31 -1.54 16 11 H 0.10 1.09 7.88 -51.93 -0.41 0.68 16 12 C -0.11 -1.26 6.24 -25.62 -0.16 -1.42 16 13 C -0.12 -1.53 6.86 -25.26 -0.17 -1.71 16 14 C -0.11 -1.78 5.59 -25.15 -0.14 -1.92 16 15 C -0.07 -1.16 0.62 -152.18 -0.09 -1.25 16 16 C 0.17 3.38 5.19 -4.04 -0.02 3.36 16 17 N -0.73 -18.03 4.93 -59.91 -0.30 -18.32 16 18 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 19 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 20 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -28.33 13.06 55.49 0.72 -27.60 16 22 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 C 0.12 2.09 5.50 -2.46 -0.01 2.08 16 27 C -0.09 -1.04 5.93 -104.09 -0.62 -1.65 16 28 C -0.12 -1.16 9.71 36.01 0.35 -0.81 16 29 C -0.08 -0.68 9.55 -39.31 -0.38 -1.06 16 30 H 0.08 0.30 8.14 -51.92 -0.42 -0.13 16 31 H 0.07 0.25 8.09 -51.93 -0.42 -0.17 16 32 H 0.07 0.25 8.09 -51.93 -0.42 -0.17 16 33 H 0.16 1.11 8.06 -52.49 -0.42 0.68 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.79 7.12 -51.93 -0.37 0.42 16 36 H 0.06 0.65 7.64 -51.93 -0.40 0.25 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.08 1.59 7.14 -51.93 -0.37 1.22 16 41 H 0.06 0.99 7.58 -51.93 -0.39 0.59 16 42 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.39 10.11 6.87 -40.82 -0.28 9.82 16 45 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 46 H 0.09 1.75 7.41 -51.93 -0.38 1.37 16 47 H 0.08 1.45 7.98 -51.93 -0.41 1.04 16 48 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 50 H 0.07 0.86 6.91 -51.93 -0.36 0.51 16 51 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 406.62 15.07 6.13 6.13 Total: -1.00 -33.76 406.62 -10.24 -44.00 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -8.41 Total: 6.93 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -2.79 Total: -2.01 kcal Atomic # 7 Polarization: -61.70 SS G_CDS: -0.24 Total: -61.93 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.63 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.76 -10.24 -44.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112484288.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.738 kcal (2) G-P(sol) polarization free energy of solvation -33.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds