Wall clock time and date at job start Wed Apr 1 2020 02:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38606 * 120.32646 * 2 1 4 4 N 1.31492 * 120.90160 * 179.72222 * 3 2 1 5 5 C 1.32745 * 121.64276 * 0.52075 * 4 3 2 6 6 C 1.48169 * 119.72238 * 179.75289 * 5 4 3 7 7 O 1.21509 * 120.00148 * 104.22063 * 6 5 4 8 8 N 1.34781 * 119.99944 * 284.21928 * 6 5 4 9 9 C 1.48118 * 127.84240 * 355.05064 * 8 6 5 10 10 C 1.54332 * 104.69485 * 219.72322 * 9 8 6 11 11 H 1.08997 * 111.85192 * 214.57992 * 10 9 8 12 12 C 1.54164 * 109.65973 * 89.92945 * 10 9 8 13 13 C 1.53961 * 104.75006 * 224.70691 * 12 10 9 14 14 C 1.54839 * 103.15440 * 37.00379 * 13 12 10 15 15 C 1.54171 * 104.32583 * 322.50729 * 14 13 12 16 16 C 1.53000 * 111.82108 * 261.25711 * 15 14 13 17 17 N 1.46500 * 109.46845 * 299.25345 * 16 15 14 18 18 C 1.36938 * 119.99996 * 180.02562 * 17 16 15 19 19 H 1.07996 * 119.99690 * 0.02562 * 18 17 16 20 20 C 1.38816 * 120.00097 * 179.97438 * 18 17 16 21 21 N 1.31611 * 119.99788 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99713 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47358 * 60.00118 * 22 20 18 24 24 H 1.48506 * 109.46764 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47158 * 300.00114 * 22 20 18 26 26 C 1.48114 * 127.84152 * 175.03083 * 8 6 5 27 27 C 1.39271 * 120.55634 * 359.48105 * 5 4 3 28 28 C 1.50701 * 120.47171 * 180.27256 * 27 5 4 29 29 C 1.38590 * 120.32548 * 179.97438 * 2 1 3 30 30 H 1.09009 * 109.46715 * 270.02596 * 1 2 3 31 31 H 1.09000 * 109.46802 * 30.02257 * 1 2 3 32 32 H 1.08999 * 109.47283 * 150.02576 * 1 2 3 33 33 H 1.08000 * 119.54650 * 359.97438 * 3 2 1 34 34 H 1.08997 * 110.39221 * 100.92377 * 9 8 6 35 35 H 1.08999 * 110.39613 * 338.53142 * 9 8 6 36 36 H 1.09002 * 110.45989 * 342.13511 * 12 10 9 37 37 H 1.08995 * 110.46086 * 104.71027 * 12 10 9 38 38 H 1.08994 * 109.95865 * 278.82837 * 13 12 10 39 39 H 1.08999 * 111.15746 * 155.73541 * 13 12 10 40 40 H 1.08997 * 110.46448 * 203.80274 * 14 13 12 41 41 H 1.08997 * 110.46661 * 81.21920 * 14 13 12 42 42 H 1.08992 * 109.47541 * 59.25332 * 16 15 14 43 43 H 1.09001 * 109.46725 * 179.25676 * 16 15 14 44 44 H 0.97002 * 120.00426 * 0.02562 * 17 16 15 45 45 H 0.97006 * 119.99969 * 179.97438 * 21 20 18 46 46 H 1.08997 * 110.39566 * 21.46860 * 26 8 6 47 47 H 1.08999 * 110.39281 * 259.07425 * 26 8 6 48 48 H 1.09000 * 109.46553 * 94.78907 * 28 27 5 49 49 H 1.08999 * 109.46928 * 214.78541 * 28 27 5 50 50 H 1.08997 * 109.46780 * 334.79004 * 28 27 5 51 51 H 1.08001 * 120.74914 * 0.04515 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1964 0.0000 4 7 3.5217 1.2096 0.0055 5 6 4.2294 0.0866 0.0009 6 6 5.7097 0.1511 0.0018 7 8 6.3275 -0.0851 1.0211 8 7 6.3710 0.4718 -1.1280 9 6 5.8069 0.6919 -2.4797 10 6 6.8227 0.0369 -3.4393 11 1 6.9028 0.5825 -4.3795 12 6 6.4451 -1.4407 -3.6645 13 6 7.7752 -2.2074 -3.5479 14 6 8.5220 -1.4483 -2.4238 15 6 8.1603 0.0320 -2.6577 16 6 9.2651 0.7752 -3.4115 17 7 10.5018 0.7377 -2.6270 18 6 11.6340 1.3423 -3.1044 19 1 11.6150 1.8471 -4.0589 20 6 12.8057 1.3072 -2.3608 21 7 12.8286 0.6924 -1.1974 22 14 14.3498 2.1326 -3.0117 23 1 14.0918 3.5820 -3.2066 24 1 15.4556 1.9528 -2.0369 25 1 14.7298 1.5187 -4.3094 26 6 7.8267 0.6846 -1.2995 27 6 3.5923 -1.1519 0.0009 28 6 4.3977 -2.4256 0.0019 29 6 2.2067 -1.1963 0.0005 30 1 -0.3633 0.0005 1.0278 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3634 -0.8902 -0.5134 33 1 1.6648 2.1305 -0.0004 34 1 5.7221 1.7586 -2.6868 35 1 4.8340 0.2084 -2.5687 36 1 5.7650 -1.7834 -2.8847 37 1 5.9957 -1.5734 -4.6486 38 1 8.3244 -2.1447 -4.4873 39 1 7.6068 -3.2468 -3.2663 40 1 9.5981 -1.5963 -2.5139 41 1 8.1720 -1.7760 -1.4450 42 1 9.4321 0.2963 -4.3762 43 1 8.9648 1.8114 -3.5672 44 1 10.5187 0.2846 -1.7695 45 1 13.6475 0.6676 -0.6779 46 1 8.3792 0.1956 -0.4973 47 1 8.0545 1.7502 -1.3241 48 1 4.5186 -2.7781 1.0263 49 1 3.8789 -3.1840 -0.5844 50 1 5.3780 -2.2359 -0.4352 51 1 1.6844 -2.1416 0.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112484288.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:26 Heat of formation + Delta-G solvation = -16.538948 kcal Electronic energy + Delta-G solvation = -31039.338692 eV Core-core repulsion = 27130.230781 eV Total energy + Delta-G solvation = -3909.107911 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.15534 -41.20043 -39.52885 -36.52752 -35.65063 -34.73492 -34.62879 -33.45644 -31.20601 -30.87831 -28.91442 -28.46347 -27.08086 -26.61895 -25.39145 -24.45147 -23.74163 -22.50492 -21.33578 -20.90088 -20.00482 -19.28556 -18.32094 -18.10728 -17.35252 -16.94357 -16.53361 -16.01828 -15.78035 -15.66365 -15.45994 -15.33845 -15.08516 -15.02778 -14.66276 -14.56044 -14.24464 -14.08720 -14.06072 -13.77635 -13.47806 -13.40633 -13.26124 -13.20330 -13.07737 -12.85072 -12.67864 -12.56326 -12.23586 -12.07806 -11.93267 -11.87983 -11.74045 -11.61092 -11.47164 -11.44509 -11.32912 -10.91235 -10.62338 -10.50983 -9.86536 -9.82459 -8.97578 -7.92975 -5.21768 -0.20552 0.21219 1.27828 1.46525 1.50031 1.56017 1.70976 2.56522 2.58877 3.06335 3.33219 3.39896 3.49851 3.55047 3.59288 3.70656 3.89281 3.97095 4.08527 4.17493 4.19409 4.24294 4.28088 4.35036 4.35492 4.42514 4.50429 4.52249 4.60348 4.62612 4.64667 4.68908 4.84384 4.87635 4.88450 4.91423 4.95851 5.02976 5.05120 5.11371 5.13903 5.21362 5.22419 5.26671 5.27915 5.38575 5.40608 5.49965 5.51616 5.65613 6.28059 6.35951 6.75526 6.87506 7.34585 8.11187 8.33598 9.30544 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.019697 B = 0.002675 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.159478 B =10464.102471 C =10819.976884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.107 4.107 3 C 0.084 3.916 4 N -0.482 5.482 5 C 0.062 3.938 6 C 0.594 3.406 7 O -0.580 6.580 8 N -0.602 5.602 9 C 0.114 3.886 10 C -0.089 4.089 11 H 0.117 0.883 12 C -0.103 4.103 13 C -0.114 4.114 14 C -0.110 4.110 15 C -0.066 4.066 16 C 0.175 3.825 17 N -0.743 5.743 18 C -0.240 4.240 19 H 0.079 0.921 20 C -0.079 4.079 21 N -0.972 5.972 22 Si 0.974 3.026 23 H -0.278 1.278 24 H -0.299 1.299 25 H -0.275 1.275 26 C 0.124 3.876 27 C -0.097 4.097 28 C -0.114 4.114 29 C -0.076 4.076 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.185 0.815 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.062 0.938 37 H 0.097 0.903 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.048 0.952 41 H 0.045 0.955 42 H 0.034 0.966 43 H 0.025 0.975 44 H 0.372 0.628 45 H 0.249 0.751 46 H 0.050 0.950 47 H 0.061 0.939 48 H 0.076 0.924 49 H 0.109 0.891 50 H 0.045 0.955 51 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.559 -6.388 -4.888 32.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.109 4.109 3 C -0.075 4.075 4 N -0.192 5.192 5 C -0.075 4.075 6 C 0.382 3.618 7 O -0.460 6.460 8 N -0.333 5.333 9 C -0.008 4.008 10 C -0.108 4.108 11 H 0.135 0.865 12 C -0.141 4.141 13 C -0.151 4.151 14 C -0.148 4.148 15 C -0.067 4.067 16 C 0.049 3.951 17 N -0.386 5.386 18 C -0.372 4.372 19 H 0.097 0.903 20 C -0.271 4.271 21 N -0.623 5.623 22 Si 0.803 3.197 23 H -0.204 1.204 24 H -0.226 1.226 25 H -0.201 1.201 26 C 0.002 3.998 27 C -0.100 4.100 28 C -0.171 4.171 29 C -0.102 4.102 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.202 0.798 34 H 0.098 0.902 35 H 0.111 0.889 36 H 0.081 0.919 37 H 0.116 0.884 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.052 0.948 43 H 0.043 0.957 44 H 0.204 0.796 45 H 0.058 0.942 46 H 0.068 0.932 47 H 0.079 0.921 48 H 0.095 0.905 49 H 0.127 0.873 50 H 0.064 0.936 51 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -30.716 -5.634 -4.384 31.535 hybrid contribution 1.514 -0.116 0.832 1.732 sum -29.202 -5.750 -3.552 29.974 Atomic orbital electron populations 1.20863 0.86819 1.04972 1.03919 1.21531 0.99716 0.93029 0.96631 1.23237 0.88110 0.99789 0.96405 1.67501 1.10324 1.29968 1.11381 1.20479 0.92089 0.90867 1.04112 1.17995 0.86817 0.75294 0.81716 1.90784 1.69575 1.51918 1.33677 1.48880 1.08478 1.66650 1.09284 1.22588 0.97500 1.01363 0.79307 1.22798 0.91336 0.98292 0.98410 0.86453 1.22208 0.96850 0.92150 1.02856 1.22273 0.96187 0.98908 0.97765 1.22330 1.00035 0.93668 0.98752 1.22125 0.95549 0.95629 0.93407 1.20690 0.84412 0.96540 0.93475 1.42586 1.07180 1.66134 1.22662 1.19611 0.89158 1.26177 1.02285 0.90291 1.25585 1.01325 1.02759 0.97393 1.69836 1.27755 1.50015 1.14711 0.85205 0.79021 0.78435 0.77058 1.20428 1.22572 1.20119 1.22223 0.80176 0.99793 0.97642 1.20976 0.95976 0.94732 0.98276 1.20838 0.98696 0.94026 1.03536 1.21744 0.91394 1.00392 0.96633 0.89549 0.89522 0.89380 0.79806 0.90153 0.88945 0.91926 0.88435 0.91224 0.90636 0.93326 0.93601 0.94767 0.95695 0.79566 0.94194 0.93155 0.92069 0.90512 0.87273 0.93563 0.80686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.44 10.03 71.24 0.71 0.27 16 2 C -0.11 -1.30 5.91 -19.69 -0.12 -1.41 16 3 C 0.08 1.45 10.86 84.83 0.92 2.37 16 4 N -0.48 -12.75 10.29 -184.91 -1.90 -14.66 16 5 C 0.06 1.75 5.46 41.89 0.23 1.98 16 6 C 0.59 21.18 5.92 86.88 0.51 21.70 16 7 O -0.58 -26.01 17.35 -3.74 -0.06 -26.07 16 8 N -0.60 -19.45 3.31 -811.38 -2.69 -22.14 16 9 C 0.11 2.70 6.20 86.52 0.54 3.24 16 10 C -0.09 -2.04 3.53 -9.29 -0.03 -2.07 16 11 H 0.12 2.27 7.88 -2.39 -0.02 2.25 16 12 C -0.10 -1.98 6.24 31.31 0.20 -1.78 16 13 C -0.11 -2.74 6.86 31.55 0.22 -2.52 16 14 C -0.11 -3.68 5.59 31.62 0.18 -3.50 16 15 C -0.07 -2.15 0.62 -50.68 -0.03 -2.18 16 16 C 0.18 6.88 5.19 86.38 0.45 7.33 16 17 N -0.74 -38.30 4.93 -343.46 -1.69 -39.99 16 18 C -0.24 -13.59 9.99 84.03 0.84 -12.75 16 19 H 0.08 4.22 7.83 -2.91 -0.02 4.19 16 20 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 21 N -0.97 -61.86 13.06 21.65 0.28 -61.58 16 22 Si 0.97 47.29 29.55 68.60 2.03 49.31 16 23 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 24 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 25 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 26 C 0.12 4.69 5.50 86.52 0.48 5.17 16 27 C -0.10 -2.03 5.93 -19.52 -0.12 -2.15 16 28 C -0.11 -2.18 9.71 71.24 0.69 -1.49 16 29 C -0.08 -1.02 9.55 22.45 0.21 -0.80 16 30 H 0.09 0.27 8.14 -2.38 -0.02 0.25 16 31 H 0.09 0.18 8.09 -2.39 -0.02 0.16 16 32 H 0.09 0.12 8.09 -2.39 -0.02 0.10 16 33 H 0.19 2.04 8.06 -2.91 -0.02 2.01 16 34 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.09 1.85 7.12 -2.39 -0.02 1.83 16 36 H 0.06 1.19 7.64 -2.39 -0.02 1.18 16 37 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.07 1.66 8.14 -2.39 -0.02 1.65 16 39 H 0.07 1.62 8.14 -2.39 -0.02 1.61 16 40 H 0.05 1.96 7.14 -2.39 -0.02 1.94 16 41 H 0.05 1.64 7.58 -2.39 -0.02 1.62 16 42 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.37 20.98 6.87 -92.71 -0.64 20.34 16 45 H 0.25 15.48 8.31 -92.70 -0.77 14.70 16 46 H 0.05 2.25 7.41 -2.39 -0.02 2.24 16 47 H 0.06 2.46 7.98 -2.39 -0.02 2.45 16 48 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 49 H 0.11 1.26 8.12 -2.39 -0.02 1.24 16 50 H 0.05 1.13 6.91 -2.39 -0.02 1.11 16 51 H 0.18 1.05 8.06 -2.91 -0.02 1.02 16 Total: -1.00 -80.12 406.62 2.59 -77.53 By element: Atomic # 1 Polarization: 30.07 SS G_CDS: 0.29 Total: 30.36 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: 6.34 Total: 7.24 kcal Atomic # 7 Polarization: -132.37 SS G_CDS: -6.00 Total: -138.37 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.06 Total: -26.07 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.31 kcal Total: -80.12 2.59 -77.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112484288.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.989 kcal (2) G-P(sol) polarization free energy of solvation -80.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds