Wall clock time and date at job start Wed Apr 1 2020 01:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38223 * 119.61967 * 2 1 4 4 C 1.38625 * 119.15978 * 180.27814 * 3 2 1 5 5 C 1.38677 * 118.42125 * 359.47454 * 4 3 2 6 6 C 1.50702 * 120.41553 * 180.27091 * 5 4 3 7 7 C 1.50698 * 109.46876 * 270.25390 * 6 5 4 8 8 O 1.21285 * 120.00352 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00324 * 180.02562 * 7 6 5 10 10 C 1.48125 * 127.83770 * 359.67676 * 9 7 6 11 11 C 1.54678 * 104.51818 * 140.25422 * 10 9 7 12 12 H 1.08999 * 112.75412 * 262.22639 * 11 10 9 13 13 C 1.54161 * 108.72666 * 137.62797 * 11 10 9 14 14 C 1.54841 * 104.32831 * 223.89452 * 13 11 10 15 15 C 1.54839 * 102.73536 * 38.18923 * 14 13 11 16 16 C 1.54165 * 104.32683 * 321.80974 * 15 14 13 17 17 C 1.52998 * 111.82350 * 260.29713 * 16 15 14 18 18 N 1.46505 * 109.46969 * 298.61736 * 17 16 15 19 19 C 1.36938 * 119.99539 * 180.02562 * 18 17 16 20 20 H 1.07993 * 120.00296 * 359.97438 * 19 18 17 21 21 C 1.38819 * 119.99703 * 180.02562 * 19 18 17 22 22 N 1.31614 * 119.99680 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00081 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47252 * 89.99064 * 23 21 19 25 25 H 1.48497 * 109.47496 * 209.99537 * 23 21 19 26 26 H 1.48506 * 109.47205 * 329.99725 * 23 21 19 27 27 C 1.48109 * 127.84779 * 180.02562 * 9 7 6 28 28 C 1.38182 * 119.16070 * 0.51978 * 5 4 3 29 29 N 1.31855 * 119.61428 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.46614 * 90.00209 * 1 2 3 31 31 H 1.08994 * 109.47013 * 210.00124 * 1 2 3 32 32 H 1.08994 * 109.46946 * 330.00748 * 1 2 3 33 33 H 1.08002 * 120.41617 * 359.97438 * 3 2 1 34 34 H 1.08003 * 120.79223 * 179.72202 * 4 3 2 35 35 H 1.08994 * 109.47431 * 30.25487 * 6 5 4 36 36 H 1.08999 * 109.46679 * 150.25960 * 6 5 4 37 37 H 1.08997 * 110.39299 * 259.09647 * 10 9 7 38 38 H 1.08999 * 110.39231 * 21.49557 * 10 9 7 39 39 H 1.09000 * 110.45681 * 105.18378 * 13 11 10 40 40 H 1.09002 * 110.57037 * 342.65943 * 13 11 10 41 41 H 1.08998 * 110.76009 * 279.87670 * 14 13 11 42 42 H 1.08997 * 110.91673 * 156.57499 * 14 13 11 43 43 H 1.09001 * 110.46245 * 203.10223 * 15 14 13 44 44 H 1.08997 * 110.46185 * 80.52451 * 15 14 13 45 45 H 1.08996 * 109.47208 * 58.61788 * 17 16 15 46 46 H 1.08997 * 109.47196 * 178.62153 * 17 16 15 47 47 H 0.97002 * 119.99928 * 0.02562 * 18 17 16 48 48 H 0.97004 * 119.99299 * 180.02562 * 22 21 19 49 49 H 1.09000 * 110.39412 * 338.50870 * 27 9 7 50 50 H 1.09004 * 110.39287 * 100.78546 * 27 9 7 51 51 H 1.07997 * 119.61165 * 179.71854 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1905 -0.0059 5 6 4.2267 -0.0344 -0.0004 6 6 5.7323 -0.0989 -0.0003 7 6 6.2342 -0.1205 -1.4210 8 8 5.4469 -0.0865 -2.3430 9 7 7.5581 -0.1778 -1.6673 10 6 8.6644 -0.2191 -0.6833 11 6 9.6777 -1.2234 -1.2809 12 1 9.5808 -2.2228 -0.8568 13 6 11.1005 -0.6588 -1.0984 14 6 11.7927 -0.9171 -2.4592 15 6 10.6589 -0.6406 -3.4768 16 6 9.3949 -1.2118 -2.8041 17 6 9.0370 -2.5961 -3.3486 18 7 8.7572 -2.4991 -4.7834 19 6 8.4118 -3.6196 -5.4908 20 1 8.3460 -4.5747 -4.9911 21 6 8.1472 -3.5279 -6.8504 22 7 8.2279 -2.3639 -7.4594 23 14 7.6753 -5.0561 -7.8153 24 1 6.1997 -5.2204 -7.7918 25 1 8.1355 -4.9163 -9.2203 26 1 8.3157 -6.2469 -7.2009 27 6 8.2372 -0.2066 -2.9833 28 6 3.4766 -1.1949 -0.0002 29 7 2.1586 -1.1463 -0.0005 30 1 -0.3632 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5137 33 1 1.6508 2.1373 -0.0004 34 1 4.1367 2.1138 -0.0105 35 1 6.1334 0.7747 0.5135 36 1 6.0571 -1.0036 0.5136 37 1 9.1187 0.7665 -0.5810 38 1 8.3015 -0.5731 0.2816 39 1 11.6207 -1.1877 -0.2998 40 1 11.0642 0.4097 -0.8861 41 1 12.1320 -1.9505 -2.5301 42 1 12.6237 -0.2281 -2.6100 43 1 10.8564 -1.1561 -4.4167 44 1 10.5503 0.4309 -3.6444 45 1 9.8722 -3.2773 -3.1865 46 1 8.1548 -2.9731 -2.8311 47 1 8.8167 -1.6413 -5.2322 48 1 8.0426 -2.2998 -8.4094 49 1 7.5513 -0.5512 -3.7572 50 1 8.6245 0.7813 -3.2325 51 1 3.9755 -2.1527 -0.0006 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112579424.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:57:36 Heat of formation + Delta-G solvation = 7.325109 kcal Electronic energy + Delta-G solvation = -30298.863935 eV Core-core repulsion = 26390.790847 eV Total energy + Delta-G solvation = -3908.073088 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.71702 -40.21040 -38.47111 -34.83636 -34.32994 -34.13211 -32.37752 -31.64653 -30.35476 -29.74428 -28.90144 -26.58184 -25.51110 -25.13831 -23.70112 -23.41243 -22.22745 -21.59140 -20.36563 -19.05082 -18.42997 -17.39485 -16.84107 -16.68964 -16.33814 -15.75212 -15.60503 -15.30041 -14.79790 -14.60261 -14.51312 -14.30988 -13.76670 -13.38485 -13.36153 -13.20733 -13.11953 -12.99590 -12.84372 -12.56454 -12.41141 -12.30790 -12.13385 -11.90981 -11.70855 -11.45395 -11.19538 -10.94601 -10.80039 -10.76030 -10.55649 -10.54109 -10.31857 -10.19927 -9.93783 -9.92463 -9.66524 -9.59665 -9.51149 -8.84899 -8.81749 -8.54593 -6.86613 -5.71458 -2.99592 0.98009 1.21870 2.75842 3.05065 3.48174 3.53183 3.54311 3.70673 4.18275 4.38484 4.48610 4.53331 4.57276 4.64246 4.73491 4.80025 4.85396 4.87542 5.11669 5.16657 5.22167 5.29658 5.35015 5.37775 5.41502 5.43129 5.46168 5.55115 5.58759 5.65748 5.66264 5.66695 5.80157 5.85000 5.88548 5.95175 6.00199 6.10685 6.14133 6.16486 6.21814 6.26770 6.43053 6.49374 6.50540 6.62281 6.72656 6.79042 6.86578 7.71172 7.74954 7.92879 8.31466 8.47282 9.58728 10.15587 10.50299 11.51430 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.008498 B = 0.003284 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3293.954633 B = 8523.860500 C =11142.764083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.122 3.878 3 C -0.173 4.173 4 C -0.058 4.058 5 C -0.122 4.122 6 C -0.091 4.091 7 C 0.530 3.470 8 O -0.525 6.525 9 N -0.621 5.621 10 C 0.106 3.894 11 C -0.098 4.098 12 H 0.090 0.910 13 C -0.115 4.115 14 C -0.121 4.121 15 C -0.114 4.114 16 C -0.073 4.073 17 C 0.175 3.825 18 N -0.728 5.728 19 C -0.238 4.238 20 H 0.069 0.931 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C 0.113 3.887 28 C 0.122 3.878 29 N -0.484 5.484 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.084 0.916 44 H 0.063 0.937 45 H 0.022 0.978 46 H 0.017 0.983 47 H 0.384 0.616 48 H 0.255 0.745 49 H 0.097 0.903 50 H 0.066 0.934 51 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.720 10.140 21.971 24.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.015 4.015 3 C -0.193 4.193 4 C -0.084 4.084 5 C -0.125 4.125 6 C -0.132 4.132 7 C 0.318 3.682 8 O -0.401 6.401 9 N -0.356 5.356 10 C -0.017 4.017 11 C -0.118 4.118 12 H 0.108 0.892 13 C -0.153 4.153 14 C -0.159 4.159 15 C -0.152 4.152 16 C -0.075 4.075 17 C 0.048 3.952 18 N -0.373 5.373 19 C -0.369 4.369 20 H 0.087 0.913 21 C -0.209 4.209 22 N -0.581 5.581 23 Si 0.737 3.263 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.009 4.009 28 C -0.035 4.035 29 N -0.193 5.193 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.119 0.881 36 H 0.123 0.877 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.103 0.897 44 H 0.081 0.919 45 H 0.039 0.961 46 H 0.035 0.965 47 H 0.218 0.782 48 H 0.064 0.936 49 H 0.116 0.884 50 H 0.084 0.916 51 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.818 9.223 21.437 23.506 hybrid contribution 0.396 0.256 -0.816 0.942 sum -2.422 9.479 20.621 22.825 Atomic orbital electron populations 1.20703 0.88967 1.03203 1.03172 1.21301 0.97022 0.88475 0.94707 1.21878 0.94696 0.99220 1.03466 1.21390 0.94426 0.97611 0.94948 1.20274 0.95197 0.94646 1.02348 1.20541 0.92143 1.05237 0.95261 1.20039 0.80507 0.76744 0.90914 1.90793 1.54005 1.49003 1.46260 1.49024 1.04354 1.73027 1.09166 1.22673 0.87448 0.99182 0.92440 1.22788 0.94393 0.98930 0.95676 0.89195 1.22435 0.94563 1.00400 0.97894 1.22479 0.97541 1.01575 0.94313 1.22481 0.92979 1.00290 0.99474 1.22264 0.94789 0.96872 0.93536 1.20479 0.96769 0.91371 0.86621 1.42348 1.83254 1.09026 1.02685 1.19183 1.38570 0.88339 0.90810 0.91344 1.24713 1.02630 0.96759 0.96750 1.69653 1.55949 1.22616 1.09873 0.86209 0.78261 0.82409 0.79436 1.21740 1.21809 1.20816 1.22643 0.94393 0.98048 0.85812 1.22580 0.89212 0.97890 0.93852 1.67524 1.09739 1.29334 1.12697 0.90358 0.90538 0.90871 0.84912 0.85074 0.88057 0.87745 0.90901 0.90724 0.91789 0.91520 0.91378 0.91876 0.89714 0.91871 0.96072 0.96545 0.78152 0.93562 0.88433 0.91589 0.82897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.90 10.17 36.01 0.37 -0.54 16 2 C 0.12 1.49 6.78 -82.58 -0.56 0.93 16 3 C -0.17 -1.87 9.74 -39.44 -0.38 -2.25 16 4 C -0.06 -0.65 9.86 -39.28 -0.39 -1.04 16 5 C -0.12 -1.50 4.39 -104.48 -0.46 -1.95 16 6 C -0.09 -0.94 4.83 -29.03 -0.14 -1.09 16 7 C 0.53 8.11 7.91 -10.99 -0.09 8.03 16 8 O -0.53 -10.87 16.30 5.55 0.09 -10.78 16 9 N -0.62 -8.78 3.31 -169.19 -0.56 -9.34 16 10 C 0.11 1.05 6.46 -2.27 -0.01 1.03 16 11 C -0.10 -1.11 3.61 -88.11 -0.32 -1.43 16 12 H 0.09 1.02 7.91 -51.93 -0.41 0.61 16 13 C -0.12 -1.09 6.36 -25.15 -0.16 -1.25 16 14 C -0.12 -1.39 6.90 -24.79 -0.17 -1.56 16 15 C -0.11 -1.66 5.68 -25.15 -0.14 -1.81 16 16 C -0.07 -1.13 0.63 -152.17 -0.10 -1.23 16 17 C 0.18 3.53 5.25 -4.04 -0.02 3.51 16 18 N -0.73 -18.49 4.59 -59.91 -0.27 -18.77 16 19 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 20 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -28.73 13.06 55.49 0.72 -28.01 16 23 Si 0.91 23.11 29.55 -169.99 -5.02 18.09 16 24 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 25 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 26 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 27 C 0.11 1.88 5.91 -2.44 -0.01 1.87 16 28 C 0.12 1.64 10.86 -17.55 -0.19 1.45 16 29 N -0.48 -6.91 10.27 -9.47 -0.10 -7.01 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 33 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 34 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 35 H 0.10 0.76 8.10 -51.93 -0.42 0.34 16 36 H 0.10 0.86 7.91 -51.93 -0.41 0.45 16 37 H 0.07 0.61 7.19 -51.93 -0.37 0.24 16 38 H 0.07 0.55 7.30 -51.93 -0.38 0.17 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.55 7.18 -51.93 -0.37 0.18 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 1.51 7.20 -51.93 -0.37 1.14 16 44 H 0.06 0.85 7.18 -51.93 -0.37 0.48 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.38 10.20 6.63 -40.82 -0.27 9.93 16 48 H 0.25 7.61 8.31 -40.82 -0.34 7.28 16 49 H 0.10 2.11 6.89 -51.93 -0.36 1.76 16 50 H 0.07 1.01 7.19 -51.93 -0.37 0.64 16 51 H 0.15 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 405.31 15.07 6.11 6.11 Total: -1.00 -36.07 405.31 -10.37 -46.44 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -8.31 Total: 8.00 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -3.03 Total: -4.73 kcal Atomic # 7 Polarization: -62.92 SS G_CDS: -0.21 Total: -63.12 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.09 Total: -10.78 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.09 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.07 -10.37 -46.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112579424.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.764 kcal (2) G-P(sol) polarization free energy of solvation -36.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds