Wall clock time and date at job start Wed Apr 1 2020 02:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38688 * 119.27546 * 2 1 4 4 C 1.38006 * 119.62626 * 179.97438 * 3 2 1 5 5 C 1.41001 * 118.28646 * 0.02562 * 4 3 2 6 6 C 1.41016 * 120.70658 * 180.02562 * 5 4 3 7 7 H 1.08001 * 119.99585 * 147.22053 * 6 5 4 8 8 C 1.39943 * 119.99954 * 327.20923 * 6 5 4 9 9 N 1.30866 * 120.00504 * 348.76256 * 8 6 5 10 10 Si 1.86808 * 119.99777 * 168.75869 * 8 6 5 11 11 H 1.48503 * 109.46860 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.46637 * 120.00282 * 10 8 6 13 13 H 1.48498 * 109.47178 * 240.00411 * 10 8 6 14 14 C 1.41706 * 118.58264 * 359.97438 * 5 4 3 15 15 N 1.38095 * 119.90311 * 180.28111 * 14 5 4 16 16 C 1.47009 * 111.00091 * 246.68912 * 15 14 5 17 17 C 1.53142 * 109.23131 * 177.75276 * 16 15 14 18 18 H 1.08998 * 109.64948 * 177.99341 * 17 16 15 19 19 C 1.53149 * 109.25891 * 298.18603 * 17 16 15 20 20 N 1.47007 * 109.25535 * 61.86767 * 19 17 16 21 21 C 1.46902 * 111.00045 * 182.22795 * 20 19 17 22 22 C 1.53005 * 109.46633 * 292.76725 * 21 20 19 23 23 C 1.52998 * 117.49882 * 242.74051 * 22 21 20 24 24 C 1.52992 * 60.00215 * 252.51394 * 23 22 21 25 25 C 1.47010 * 110.82097 * 58.40210 * 20 19 17 26 26 C 1.53149 * 109.22503 * 301.57842 * 25 20 19 27 27 H 1.09000 * 109.64798 * 177.33962 * 26 25 20 28 28 C 1.47008 * 110.99997 * 122.96987 * 15 14 5 29 29 O 1.43180 * 109.04146 * 57.27961 * 17 16 15 30 30 N 1.31971 * 119.27822 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.46980 * 270.01864 * 1 2 3 32 32 H 1.09000 * 109.47495 * 30.02147 * 1 2 3 33 33 H 1.08999 * 109.47022 * 150.02678 * 1 2 3 34 34 H 1.08003 * 120.18388 * 359.95404 * 3 2 1 35 35 H 1.08004 * 120.85239 * 179.97438 * 4 3 2 36 36 H 0.96996 * 120.00275 * 179.97438 * 9 8 6 37 37 H 1.09002 * 109.51154 * 297.68433 * 16 15 14 38 38 H 1.09007 * 109.51110 * 57.82172 * 16 15 14 39 39 H 1.08993 * 109.50999 * 181.80043 * 19 17 16 40 40 H 1.09004 * 109.50687 * 301.93558 * 19 17 16 41 41 H 1.08998 * 109.47235 * 52.76301 * 21 20 19 42 42 H 1.08992 * 109.47240 * 172.77156 * 21 20 19 43 43 H 1.08993 * 115.55384 * 28.45130 * 22 21 20 44 44 H 1.09004 * 117.49883 * 0.02562 * 23 22 21 45 45 H 1.08999 * 117.49898 * 145.01798 * 23 22 21 46 46 H 1.08998 * 117.50069 * 252.51409 * 24 23 22 47 47 H 1.09000 * 117.52081 * 107.47547 * 24 23 22 48 48 H 1.08995 * 109.50948 * 61.50051 * 25 20 19 49 49 H 1.08995 * 109.51290 * 181.60911 * 25 20 19 50 50 H 1.08994 * 109.50598 * 302.15631 * 28 15 14 51 51 H 1.08991 * 109.50835 * 62.29206 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2097 0.0000 4 6 3.5652 1.2182 0.0005 5 6 4.2410 -0.0193 0.0005 6 6 5.6502 -0.0702 0.0016 7 1 6.1610 -0.8759 0.5080 8 6 6.3867 0.9229 -0.6538 9 7 5.7821 1.7698 -1.4474 10 14 8.2332 1.0400 -0.3955 11 1 8.6705 -0.0261 0.5413 12 1 8.9268 0.8695 -1.6975 13 1 8.5700 2.3692 0.1745 14 6 3.4737 -1.2107 0.0005 15 7 4.1075 -2.4377 0.0064 16 6 3.8719 -3.1583 -1.2531 17 6 4.6365 -4.4849 -1.2258 18 1 4.4381 -5.0412 -2.1420 19 6 6.1370 -4.2008 -1.1106 20 7 6.4011 -3.4941 0.1510 21 6 7.8250 -3.1551 0.2765 22 6 8.6432 -4.4389 0.4300 23 6 9.4211 -4.6292 1.7336 24 6 10.1676 -4.3085 0.4372 25 6 5.9456 -4.2891 1.3006 26 6 4.4472 -4.5714 1.1565 27 1 4.1118 -5.2004 1.9811 28 6 3.6809 -3.2454 1.1582 29 8 4.2158 -5.2432 -0.0866 30 7 2.1524 -1.1511 0.0005 31 1 -0.3633 0.0003 1.0277 32 1 -0.3634 0.8898 -0.5142 33 1 -0.3633 -0.8902 -0.5134 34 1 1.6363 2.1399 -0.0007 35 1 4.1134 2.1488 0.0001 36 1 6.2926 2.4584 -1.9014 37 1 2.8057 -3.3548 -1.3662 38 1 4.2219 -2.5534 -2.0897 39 1 6.6876 -5.1414 -1.1231 40 1 6.4555 -3.5808 -1.9487 41 1 8.1513 -2.6209 -0.6158 42 1 7.9723 -2.5236 1.1525 43 1 8.2163 -5.3270 -0.0359 44 1 9.3498 -3.8400 2.4821 45 1 9.5060 -5.6427 2.1257 46 1 10.7435 -5.1109 -0.0237 47 1 10.5875 -3.3081 0.3321 48 1 6.4923 -5.2316 1.3310 49 1 6.1253 -3.7341 2.2213 50 1 3.8920 -2.7042 2.0804 51 1 2.6114 -3.4431 1.0880 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164967798.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:16 Heat of formation + Delta-G solvation = 45.869745 kcal Electronic energy + Delta-G solvation = -32685.495880 eV Core-core repulsion = 28779.094213 eV Total energy + Delta-G solvation = -3906.401667 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.43939 -38.52843 -37.64186 -34.95443 -34.50456 -34.02230 -32.32689 -30.89422 -30.11509 -28.22957 -27.53776 -25.93751 -25.52625 -23.80593 -22.71934 -22.67052 -22.26860 -20.98148 -20.45898 -19.87423 -17.89384 -17.12706 -16.67320 -15.84846 -15.61527 -15.51335 -15.00718 -14.75577 -14.62372 -14.45566 -14.02621 -13.77675 -13.74064 -13.57480 -13.06366 -12.93731 -12.50450 -12.44460 -12.29855 -11.83871 -11.73796 -11.62122 -11.53341 -11.47424 -11.38922 -11.28809 -11.08784 -11.04859 -10.88850 -10.64547 -10.53482 -10.39590 -10.35950 -9.87547 -9.75272 -9.58981 -9.24848 -9.20332 -8.30839 -8.03513 -7.65078 -7.23955 -7.06508 -6.67716 -4.24772 2.63497 2.93769 3.08623 3.12862 3.21427 3.80438 3.96152 4.09162 4.31661 4.69105 4.75771 4.79904 4.97337 5.04244 5.23483 5.29688 5.34217 5.37865 5.45484 5.57479 5.60739 5.62351 5.79630 5.80296 5.88196 5.92217 6.00151 6.03479 6.09585 6.11203 6.11811 6.13998 6.15431 6.20431 6.36292 6.41659 6.47033 6.49838 6.52851 6.54744 6.58160 6.93748 7.08198 7.17629 7.29616 7.48368 7.55884 7.58595 7.70727 7.81159 7.99022 8.10228 8.49437 8.79089 8.85747 9.07255 9.67965 10.24958 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.009647 B = 0.005847 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2901.620614 B = 4787.431237 C = 7012.907911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.007 4.007 3 C -0.149 4.149 4 C -0.130 4.130 5 C 0.097 3.903 6 C -0.405 4.405 7 H 0.106 0.894 8 C 0.068 3.932 9 N -0.805 5.805 10 Si 0.903 3.097 11 H -0.256 1.256 12 H -0.277 1.277 13 H -0.278 1.278 14 C 0.164 3.836 15 N -0.408 5.408 16 C 0.049 3.951 17 C 0.092 3.908 18 H 0.101 0.899 19 C 0.039 3.961 20 N -0.473 5.473 21 C 0.088 3.912 22 C -0.187 4.187 23 C -0.178 4.178 24 C -0.180 4.180 25 C 0.040 3.960 26 C 0.091 3.909 27 H 0.100 0.900 28 C 0.045 3.955 29 O -0.381 6.381 30 N -0.493 5.493 31 H 0.046 0.954 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.095 0.905 35 H 0.120 0.880 36 H 0.277 0.723 37 H 0.035 0.965 38 H 0.077 0.923 39 H 0.028 0.972 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.100 0.900 44 H 0.094 0.906 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.093 0.907 48 H 0.032 0.968 49 H 0.079 0.921 50 H 0.072 0.928 51 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.454 -9.015 2.641 10.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.147 4.147 3 C -0.170 4.170 4 C -0.157 4.157 5 C 0.091 3.909 6 C -0.435 4.435 7 H 0.124 0.876 8 C -0.148 4.148 9 N -0.432 5.432 10 Si 0.729 3.271 11 H -0.180 1.180 12 H -0.203 1.203 13 H -0.203 1.203 14 C -0.068 4.068 15 N -0.129 5.129 16 C -0.080 4.080 17 C 0.034 3.966 18 H 0.119 0.881 19 C -0.090 4.090 20 N -0.195 5.195 21 C -0.040 4.040 22 C -0.207 4.207 23 C -0.215 4.215 24 C -0.218 4.218 25 C -0.088 4.088 26 C 0.033 3.967 27 H 0.118 0.882 28 C -0.084 4.084 29 O -0.300 6.300 30 N -0.205 5.205 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.113 0.887 35 H 0.138 0.862 36 H 0.088 0.912 37 H 0.053 0.947 38 H 0.096 0.904 39 H 0.046 0.954 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.118 0.882 44 H 0.112 0.888 45 H 0.105 0.895 46 H 0.106 0.894 47 H 0.112 0.888 48 H 0.050 0.950 49 H 0.097 0.903 50 H 0.090 0.910 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.174 -9.232 2.500 10.435 hybrid contribution 1.110 0.414 -0.147 1.194 sum 5.284 -8.818 2.353 10.546 Atomic orbital electron populations 1.20269 0.92088 1.00586 1.00096 1.19979 0.94337 0.88373 1.11975 1.21404 0.95431 0.96826 1.03293 1.21565 0.92247 0.98687 1.03156 1.18094 0.94436 0.89368 0.89041 1.19712 0.90676 1.06613 1.26516 0.87615 1.26005 1.00836 0.94291 0.93686 1.69822 1.38160 1.14226 1.20970 0.86336 0.82753 0.79007 0.79048 1.17956 1.20293 1.20323 1.19590 0.85906 0.90476 1.10868 1.59668 1.53346 0.99940 0.99944 1.22483 0.97381 0.93743 0.94357 1.22458 0.93064 0.92273 0.88844 0.88100 1.22603 0.95772 0.96432 0.94191 1.62327 1.14628 1.42298 1.00216 1.21917 0.86013 0.93202 1.02889 1.23272 0.93802 1.02184 1.01483 1.22970 1.05082 1.02215 0.91280 1.22878 0.94563 1.02635 1.01703 1.22562 0.95073 0.95780 0.95399 1.22493 0.94299 0.93413 0.86508 0.88193 1.22483 0.96845 0.93190 0.95863 1.88047 1.83826 1.43732 1.14367 1.66819 1.11585 1.30207 1.11930 0.93504 0.93121 0.92976 0.88723 0.86197 0.91214 0.94726 0.90445 0.95362 0.89915 0.90454 0.90434 0.88151 0.88788 0.89492 0.89396 0.88827 0.95026 0.90273 0.90953 0.94325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.34 10.15 36.00 0.37 -0.98 16 2 C -0.01 -0.15 6.79 -82.37 -0.56 -0.71 16 3 C -0.15 -3.46 9.69 -39.50 -0.38 -3.84 16 4 C -0.13 -3.27 8.74 -38.62 -0.34 -3.61 16 5 C 0.10 2.45 5.51 -106.47 -0.59 1.87 16 6 C -0.41 -9.91 8.61 -37.89 -0.33 -10.23 16 7 H 0.11 2.53 7.02 -52.49 -0.37 2.16 16 8 C 0.07 1.61 5.24 -17.32 -0.09 1.52 16 9 N -0.81 -20.08 11.20 55.55 0.62 -19.45 16 10 Si 0.90 17.97 29.58 -169.99 -5.03 12.94 16 11 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 12 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 13 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 14 C 0.16 3.92 5.37 -155.02 -0.83 3.08 16 15 N -0.41 -8.40 2.29 -172.32 -0.40 -8.79 16 16 C 0.05 0.94 4.94 -3.69 -0.02 0.92 16 17 C 0.09 1.47 4.01 -26.58 -0.11 1.36 16 18 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 19 C 0.04 0.58 4.82 -3.69 -0.02 0.56 16 20 N -0.47 -7.51 2.83 -234.26 -0.66 -8.17 16 21 C 0.09 1.31 5.37 -3.82 -0.02 1.29 16 22 C -0.19 -2.31 4.18 -90.62 -0.38 -2.69 16 23 C -0.18 -1.98 10.18 -26.74 -0.27 -2.25 16 24 C -0.18 -2.00 10.25 -26.74 -0.27 -2.28 16 25 C 0.04 0.59 4.70 -3.69 -0.02 0.57 16 26 C 0.09 1.42 4.01 -26.58 -0.11 1.32 16 27 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 28 C 0.04 0.83 4.85 -3.69 -0.02 0.82 16 29 O -0.38 -6.37 10.58 -35.23 -0.37 -6.74 16 30 N -0.49 -11.84 9.47 -8.11 -0.08 -11.92 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.83 8.07 -51.93 -0.42 0.42 16 33 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.09 1.95 8.06 -52.48 -0.42 1.53 16 35 H 0.12 3.08 6.66 -52.48 -0.35 2.73 16 36 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 37 H 0.03 0.72 8.03 -51.93 -0.42 0.30 16 38 H 0.08 1.59 8.14 -51.92 -0.42 1.17 16 39 H 0.03 0.40 6.48 -51.93 -0.34 0.06 16 40 H 0.08 1.27 8.11 -51.93 -0.42 0.85 16 41 H 0.08 1.22 8.09 -51.93 -0.42 0.80 16 42 H 0.08 1.22 7.87 -51.93 -0.41 0.81 16 43 H 0.10 1.28 6.22 -51.93 -0.32 0.95 16 44 H 0.09 1.05 8.03 -51.93 -0.42 0.63 16 45 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 46 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 48 H 0.03 0.44 6.91 -51.93 -0.36 0.08 16 49 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 50 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 51 H 0.04 0.78 7.84 -51.93 -0.41 0.38 16 LS Contribution 391.78 15.07 5.90 5.90 Total: -1.00 -26.91 391.78 -12.42 -39.33 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -8.43 Total: 10.19 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: -3.98 Total: -13.28 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: -0.51 Total: -48.34 kcal Atomic # 8 Polarization: -6.37 SS G_CDS: -0.37 Total: -6.74 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -26.91 -12.42 -39.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164967798.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.203 kcal (2) G-P(sol) polarization free energy of solvation -26.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds