Wall clock time and date at job start Wed Apr 1 2020 02:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38688 * 119.27546 * 2 1 4 4 C 1.38006 * 119.62626 * 179.97438 * 3 2 1 5 5 C 1.41001 * 118.28646 * 0.02562 * 4 3 2 6 6 C 1.41016 * 120.70658 * 180.02562 * 5 4 3 7 7 H 1.08001 * 119.99585 * 147.22053 * 6 5 4 8 8 C 1.39943 * 119.99954 * 327.20923 * 6 5 4 9 9 N 1.30866 * 120.00504 * 348.76256 * 8 6 5 10 10 Si 1.86808 * 119.99777 * 168.75869 * 8 6 5 11 11 H 1.48503 * 109.46860 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.46637 * 120.00282 * 10 8 6 13 13 H 1.48498 * 109.47178 * 240.00411 * 10 8 6 14 14 C 1.41706 * 118.58264 * 359.97438 * 5 4 3 15 15 N 1.38095 * 119.90311 * 180.28111 * 14 5 4 16 16 C 1.47009 * 111.00091 * 246.68912 * 15 14 5 17 17 C 1.53142 * 109.23131 * 177.75276 * 16 15 14 18 18 H 1.08998 * 109.64948 * 177.99341 * 17 16 15 19 19 C 1.53149 * 109.25891 * 298.18603 * 17 16 15 20 20 N 1.47007 * 109.25535 * 61.86767 * 19 17 16 21 21 C 1.46902 * 111.00045 * 182.22795 * 20 19 17 22 22 C 1.53005 * 109.46633 * 292.76725 * 21 20 19 23 23 C 1.52998 * 117.49882 * 242.74051 * 22 21 20 24 24 C 1.52992 * 60.00215 * 252.51394 * 23 22 21 25 25 C 1.47010 * 110.82097 * 58.40210 * 20 19 17 26 26 C 1.53149 * 109.22503 * 301.57842 * 25 20 19 27 27 H 1.09000 * 109.64798 * 177.33962 * 26 25 20 28 28 C 1.47008 * 110.99997 * 122.96987 * 15 14 5 29 29 O 1.43180 * 109.04146 * 57.27961 * 17 16 15 30 30 N 1.31971 * 119.27822 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.46980 * 270.01864 * 1 2 3 32 32 H 1.09000 * 109.47495 * 30.02147 * 1 2 3 33 33 H 1.08999 * 109.47022 * 150.02678 * 1 2 3 34 34 H 1.08003 * 120.18388 * 359.95404 * 3 2 1 35 35 H 1.08004 * 120.85239 * 179.97438 * 4 3 2 36 36 H 0.96996 * 120.00275 * 179.97438 * 9 8 6 37 37 H 1.09002 * 109.51154 * 297.68433 * 16 15 14 38 38 H 1.09007 * 109.51110 * 57.82172 * 16 15 14 39 39 H 1.08993 * 109.50999 * 181.80043 * 19 17 16 40 40 H 1.09004 * 109.50687 * 301.93558 * 19 17 16 41 41 H 1.08998 * 109.47235 * 52.76301 * 21 20 19 42 42 H 1.08992 * 109.47240 * 172.77156 * 21 20 19 43 43 H 1.08993 * 115.55384 * 28.45130 * 22 21 20 44 44 H 1.09004 * 117.49883 * 0.02562 * 23 22 21 45 45 H 1.08999 * 117.49898 * 145.01798 * 23 22 21 46 46 H 1.08998 * 117.50069 * 252.51409 * 24 23 22 47 47 H 1.09000 * 117.52081 * 107.47547 * 24 23 22 48 48 H 1.08995 * 109.50948 * 61.50051 * 25 20 19 49 49 H 1.08995 * 109.51290 * 181.60911 * 25 20 19 50 50 H 1.08994 * 109.50598 * 302.15631 * 28 15 14 51 51 H 1.08991 * 109.50835 * 62.29206 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2097 0.0000 4 6 3.5652 1.2182 0.0005 5 6 4.2410 -0.0193 0.0005 6 6 5.6502 -0.0702 0.0016 7 1 6.1610 -0.8759 0.5080 8 6 6.3867 0.9229 -0.6538 9 7 5.7821 1.7698 -1.4474 10 14 8.2332 1.0400 -0.3955 11 1 8.6705 -0.0261 0.5413 12 1 8.9268 0.8695 -1.6975 13 1 8.5700 2.3692 0.1745 14 6 3.4737 -1.2107 0.0005 15 7 4.1075 -2.4377 0.0064 16 6 3.8719 -3.1583 -1.2531 17 6 4.6365 -4.4849 -1.2258 18 1 4.4381 -5.0412 -2.1420 19 6 6.1370 -4.2008 -1.1106 20 7 6.4011 -3.4941 0.1510 21 6 7.8250 -3.1551 0.2765 22 6 8.6432 -4.4389 0.4300 23 6 9.4211 -4.6292 1.7336 24 6 10.1676 -4.3085 0.4372 25 6 5.9456 -4.2891 1.3006 26 6 4.4472 -4.5714 1.1565 27 1 4.1118 -5.2004 1.9811 28 6 3.6809 -3.2454 1.1582 29 8 4.2158 -5.2432 -0.0866 30 7 2.1524 -1.1511 0.0005 31 1 -0.3633 0.0003 1.0277 32 1 -0.3634 0.8898 -0.5142 33 1 -0.3633 -0.8902 -0.5134 34 1 1.6363 2.1399 -0.0007 35 1 4.1134 2.1488 0.0001 36 1 6.2926 2.4584 -1.9014 37 1 2.8057 -3.3548 -1.3662 38 1 4.2219 -2.5534 -2.0897 39 1 6.6876 -5.1414 -1.1231 40 1 6.4555 -3.5808 -1.9487 41 1 8.1513 -2.6209 -0.6158 42 1 7.9723 -2.5236 1.1525 43 1 8.2163 -5.3270 -0.0359 44 1 9.3498 -3.8400 2.4821 45 1 9.5060 -5.6427 2.1257 46 1 10.7435 -5.1109 -0.0237 47 1 10.5875 -3.3081 0.3321 48 1 6.4923 -5.2316 1.3310 49 1 6.1253 -3.7341 2.2213 50 1 3.8920 -2.7042 2.0804 51 1 2.6114 -3.4431 1.0880 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164967798.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:15 Heat of formation + Delta-G solvation = 33.336326 kcal Electronic energy + Delta-G solvation = -32686.039370 eV Core-core repulsion = 28779.094213 eV Total energy + Delta-G solvation = -3906.945157 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.82183 -40.21537 -38.74960 -36.47766 -35.88878 -35.65759 -33.65468 -32.68537 -31.84492 -29.62466 -29.17841 -27.31021 -26.98603 -25.44076 -24.10334 -23.96863 -23.15577 -22.64791 -22.06859 -21.20518 -19.24521 -18.96190 -18.07765 -17.25971 -17.09127 -16.87021 -16.36949 -16.16895 -16.12622 -15.76411 -15.61756 -15.20858 -15.11889 -14.96261 -14.66039 -14.21376 -14.16379 -13.74853 -13.60131 -13.53488 -13.28704 -13.01783 -12.99684 -12.87015 -12.72100 -12.63486 -12.55576 -12.45782 -12.34839 -12.10996 -11.94953 -11.84542 -11.57936 -11.33633 -11.05766 -10.98655 -10.73659 -10.58464 -10.10061 -9.90662 -9.10971 -9.03438 -8.56809 -8.44774 -6.13528 0.81922 1.09487 1.43005 1.53331 1.56679 2.27508 2.78033 2.87127 2.90102 3.11528 3.28304 3.69894 3.80949 3.92925 3.99332 4.02315 4.11237 4.12874 4.13737 4.21863 4.27558 4.43178 4.47245 4.53538 4.59534 4.66598 4.70199 4.77231 4.79417 4.83824 4.85810 4.92086 4.93832 4.95568 4.98095 5.00202 5.03880 5.04563 5.10518 5.19129 5.28642 5.30173 5.37847 5.41134 5.47216 5.87776 5.93988 6.18063 6.24636 6.38363 6.39797 6.44419 6.64088 6.91976 6.99977 7.24185 7.82185 8.45638 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.009647 B = 0.005847 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2901.620614 B = 4787.431237 C = 7012.907911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.017 4.017 3 C -0.156 4.156 4 C -0.152 4.152 5 C 0.067 3.933 6 C -0.418 4.418 7 H 0.107 0.893 8 C 0.032 3.968 9 N -0.839 5.839 10 Si 0.966 3.034 11 H -0.243 1.243 12 H -0.275 1.275 13 H -0.277 1.277 14 C 0.159 3.841 15 N -0.407 5.407 16 C 0.054 3.946 17 C 0.098 3.902 18 H 0.127 0.873 19 C 0.045 3.955 20 N -0.498 5.498 21 C 0.094 3.906 22 C -0.192 4.192 23 C -0.170 4.170 24 C -0.176 4.176 25 C 0.048 3.952 26 C 0.095 3.905 27 H 0.129 0.871 28 C 0.050 3.950 29 O -0.384 6.384 30 N -0.509 5.509 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.119 0.881 35 H 0.106 0.894 36 H 0.282 0.718 37 H 0.015 0.985 38 H 0.056 0.944 39 H 0.049 0.951 40 H 0.074 0.926 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.102 0.898 44 H 0.091 0.909 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.089 0.911 48 H 0.049 0.951 49 H 0.078 0.922 50 H 0.063 0.937 51 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.492 -10.851 3.234 12.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.157 4.157 3 C -0.176 4.176 4 C -0.179 4.179 5 C 0.061 3.939 6 C -0.448 4.448 7 H 0.124 0.876 8 C -0.181 4.181 9 N -0.466 5.466 10 Si 0.789 3.211 11 H -0.166 1.166 12 H -0.200 1.200 13 H -0.202 1.202 14 C -0.073 4.073 15 N -0.128 5.128 16 C -0.074 4.074 17 C 0.040 3.960 18 H 0.144 0.856 19 C -0.083 4.083 20 N -0.220 5.220 21 C -0.034 4.034 22 C -0.212 4.212 23 C -0.207 4.207 24 C -0.213 4.213 25 C -0.080 4.080 26 C 0.037 3.963 27 H 0.147 0.853 28 C -0.079 4.079 29 O -0.303 6.303 30 N -0.222 5.222 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.137 0.863 35 H 0.124 0.876 36 H 0.092 0.908 37 H 0.033 0.967 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.120 0.880 44 H 0.109 0.891 45 H 0.120 0.880 46 H 0.121 0.879 47 H 0.108 0.892 48 H 0.067 0.933 49 H 0.097 0.903 50 H 0.081 0.919 51 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 5.200 -11.079 3.102 12.626 hybrid contribution 0.666 1.026 -0.335 1.268 sum 5.867 -10.053 2.766 11.964 Atomic orbital electron populations 1.20300 0.88838 1.01758 1.01525 1.20746 0.96642 0.87961 1.10332 1.21679 0.94926 0.98212 1.02744 1.21579 0.93278 0.98254 1.04789 1.18450 0.95389 0.90059 0.90031 1.19801 0.90587 1.07276 1.27116 0.87564 1.26722 1.04937 0.93556 0.92893 1.69892 1.39918 1.14979 1.21859 0.85377 0.77467 0.79149 0.79151 1.16616 1.20004 1.20231 1.19939 0.86081 0.91611 1.09696 1.59686 1.52804 0.99350 1.01002 1.22430 0.96664 0.95197 0.93089 1.22511 0.93154 0.90495 0.89830 0.85557 1.22514 0.95034 0.97072 0.93717 1.62255 1.15629 1.43281 1.00878 1.21736 0.85948 0.94241 1.01477 1.23040 0.94294 1.00754 1.03069 1.23020 1.03908 1.02969 0.90836 1.22949 0.93644 1.03037 1.01683 1.22489 0.94233 0.96359 0.94927 1.22607 0.94648 0.91928 0.87074 0.85331 1.22475 0.96211 0.94567 0.94619 1.88051 1.83985 1.43574 1.14659 1.66981 1.11728 1.30833 1.12642 0.91828 0.90900 0.92835 0.86295 0.87638 0.90813 0.96725 0.92573 0.93352 0.90737 0.92009 0.91772 0.87953 0.89100 0.88009 0.87900 0.89218 0.93274 0.90316 0.91862 0.96303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.36 10.15 71.23 0.72 -1.64 16 2 C -0.02 -0.78 6.79 42.64 0.29 -0.49 16 3 C -0.16 -7.30 9.69 22.32 0.22 -7.08 16 4 C -0.15 -7.95 8.74 22.89 0.20 -7.75 16 5 C 0.07 3.51 5.51 -21.06 -0.12 3.39 16 6 C -0.42 -21.05 8.61 23.36 0.20 -20.85 16 7 H 0.11 5.20 7.02 -2.91 -0.02 5.18 16 8 C 0.03 1.54 5.24 85.25 0.45 1.98 16 9 N -0.84 -43.13 11.20 21.83 0.24 -42.88 16 10 Si 0.97 37.23 29.58 68.60 2.03 39.25 16 11 H -0.24 -8.76 7.11 99.48 0.71 -8.05 16 12 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 13 H -0.28 -10.58 7.11 99.48 0.71 -9.87 16 14 C 0.16 7.84 5.37 134.05 0.72 8.56 16 15 N -0.41 -17.11 2.29 -699.10 -1.60 -18.71 16 16 C 0.05 2.14 4.94 86.33 0.43 2.57 16 17 C 0.10 3.02 4.01 30.69 0.12 3.14 16 18 H 0.13 3.24 8.14 -2.39 -0.02 3.22 16 19 C 0.05 1.30 4.82 86.33 0.42 1.71 16 20 N -0.50 -15.34 2.83 -895.05 -2.53 -17.87 16 21 C 0.09 2.70 5.37 86.30 0.46 3.16 16 22 C -0.19 -4.28 4.18 -10.79 -0.05 -4.33 16 23 C -0.17 -3.30 10.18 30.59 0.31 -2.99 16 24 C -0.18 -3.45 10.25 30.59 0.31 -3.13 16 25 C 0.05 1.32 4.70 86.33 0.41 1.73 16 26 C 0.10 2.81 4.01 30.69 0.12 2.94 16 27 H 0.13 3.09 8.14 -2.39 -0.02 3.07 16 28 C 0.05 1.86 4.85 86.33 0.42 2.28 16 29 O -0.38 -12.05 10.58 -148.98 -1.58 -13.62 16 30 N -0.51 -24.93 9.47 -179.56 -1.70 -26.63 16 31 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.07 2.25 8.07 -2.39 -0.02 2.23 16 33 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.12 4.85 8.06 -2.91 -0.02 4.82 16 35 H 0.11 5.69 6.66 -2.91 -0.02 5.67 16 36 H 0.28 13.34 8.30 -92.71 -0.77 12.57 16 37 H 0.01 0.62 8.03 -2.39 -0.02 0.60 16 38 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 39 H 0.05 1.22 6.48 -2.39 -0.02 1.20 16 40 H 0.07 2.26 8.11 -2.39 -0.02 2.24 16 41 H 0.06 1.93 8.09 -2.39 -0.02 1.91 16 42 H 0.06 1.98 7.87 -2.39 -0.02 1.96 16 43 H 0.10 2.28 6.22 -2.39 -0.01 2.27 16 44 H 0.09 1.83 8.03 -2.38 -0.02 1.81 16 45 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.10 1.72 8.14 -2.39 -0.02 1.71 16 47 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 48 H 0.05 1.20 6.91 -2.39 -0.02 1.19 16 49 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 50 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 51 H 0.02 0.77 7.84 -2.39 -0.02 0.75 16 Total: -1.00 -59.58 391.78 1.42 -58.16 By element: Atomic # 1 Polarization: 38.19 SS G_CDS: 0.91 Total: 39.10 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: 5.64 Total: -16.80 kcal Atomic # 7 Polarization: -100.50 SS G_CDS: -5.59 Total: -106.09 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: -1.58 Total: -13.62 kcal Atomic # 14 Polarization: 37.23 SS G_CDS: 2.03 Total: 39.25 kcal Total: -59.58 1.42 -58.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164967798.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.497 kcal (2) G-P(sol) polarization free energy of solvation -59.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds