Wall clock time and date at job start Wed Apr 1 2020 02:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38223 * 120.41747 * 2 1 4 4 N 1.31858 * 120.76119 * 179.97438 * 3 2 1 5 5 C 1.31881 * 121.72408 * 359.70264 * 4 3 2 6 6 C 1.38177 * 120.76605 * 0.58591 * 5 4 3 7 7 C 1.50705 * 120.41916 * 179.70937 * 6 5 4 8 8 C 1.53004 * 109.46754 * 269.71967 * 7 6 5 9 9 C 1.50697 * 109.47072 * 179.97438 * 8 7 6 10 10 O 1.21286 * 120.00041 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99927 * 179.97438 * 9 8 7 12 12 C 1.46504 * 120.00030 * 180.02562 * 11 9 8 13 13 H 1.09000 * 112.88330 * 336.34798 * 12 11 9 14 14 C 1.53949 * 113.66194 * 107.81453 * 12 11 9 15 15 C 1.53950 * 87.29535 * 139.20730 * 14 12 11 16 16 H 1.09008 * 113.74633 * 220.78601 * 15 14 12 17 17 N 1.46499 * 113.66341 * 89.73825 * 15 14 12 18 18 C 1.36939 * 119.99933 * 108.08949 * 17 15 14 19 19 H 1.08001 * 119.99700 * 359.72658 * 18 17 15 20 20 C 1.38810 * 120.00095 * 179.71972 * 18 17 15 21 21 N 1.31612 * 120.00054 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99751 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47517 * 89.99708 * 22 20 18 24 24 H 1.48502 * 109.46736 * 209.99481 * 22 20 18 25 25 H 1.48496 * 109.47375 * 329.99177 * 22 20 18 26 26 C 1.52909 * 86.78227 * 335.26395 * 15 14 12 27 27 C 1.52907 * 121.14177 * 259.18037 * 26 15 14 28 28 C 1.53951 * 86.78403 * 209.38090 * 27 26 15 29 29 C 1.52906 * 121.13749 * 150.61521 * 26 15 14 30 30 C 1.38625 * 120.41802 * 179.97438 * 2 1 3 31 31 H 1.09004 * 109.47087 * 270.02252 * 1 2 3 32 32 H 1.09000 * 109.47122 * 30.02290 * 1 2 3 33 33 H 1.08997 * 109.47098 * 150.02430 * 1 2 3 34 34 H 1.08000 * 119.62242 * 359.97438 * 3 2 1 35 35 H 1.08005 * 119.61536 * 180.31517 * 5 4 3 36 36 H 1.09002 * 109.47396 * 149.72167 * 7 6 5 37 37 H 1.09000 * 109.47314 * 29.71731 * 7 6 5 38 38 H 1.09002 * 109.47006 * 59.99961 * 8 7 6 39 39 H 1.09000 * 109.47017 * 299.99946 * 8 7 6 40 40 H 0.96999 * 120.00435 * 0.02562 * 11 9 8 41 41 H 1.09002 * 113.58121 * 24.60423 * 14 12 11 42 42 H 1.08996 * 113.57817 * 253.80635 * 14 12 11 43 43 H 0.97001 * 119.99790 * 287.80923 * 17 15 14 44 44 H 0.96998 * 120.00381 * 180.02562 * 21 20 18 45 45 H 1.08997 * 113.66251 * 323.85149 * 27 26 15 46 46 H 1.09002 * 113.66158 * 94.90664 * 27 26 15 47 47 H 1.09000 * 113.57860 * 270.12530 * 28 27 26 48 48 H 1.09001 * 113.64943 * 139.34808 * 28 27 26 49 49 H 1.09002 * 113.66647 * 265.09510 * 29 26 15 50 50 H 1.09003 * 113.66258 * 36.05869 * 29 26 15 51 51 H 1.07995 * 120.79109 * 0.04188 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.1999 0.0005 5 6 4.2256 0.0823 0.0069 6 6 3.5948 -1.1470 0.0011 7 6 4.4027 -2.4192 0.0018 8 6 4.6767 -2.8501 -1.4405 9 6 5.4850 -4.1219 -1.4398 10 8 5.8096 -4.6336 -0.3892 11 7 5.8464 -4.6913 -2.6067 12 6 6.6318 -5.9280 -2.6061 13 1 7.1990 -6.0694 -1.6862 14 6 5.8298 -7.1695 -3.0371 15 6 7.0744 -7.6081 -3.8300 16 1 6.8452 -8.0305 -4.8084 17 7 8.0035 -8.4350 -3.0558 18 6 8.1172 -9.7728 -3.3256 19 1 7.5188 -10.2190 -4.1060 20 6 9.0018 -10.5551 -2.5960 21 7 9.1108 -11.8409 -2.8549 22 14 10.0364 -9.7832 -1.2457 23 1 9.3009 -9.8526 0.0424 24 1 11.3199 -10.5202 -1.1232 25 1 10.3112 -8.3634 -1.5830 26 6 7.4606 -6.1293 -3.8753 27 6 7.2105 -5.2847 -5.1252 28 6 8.4343 -4.4521 -4.7017 29 6 8.9256 -5.6963 -3.9398 30 6 2.2089 -1.1954 0.0005 31 1 -0.3633 0.0004 1.0277 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3633 -0.8902 -0.5134 34 1 1.6675 2.1277 -0.0004 35 1 5.3047 0.1286 0.0122 36 1 3.8459 -3.2030 0.5156 37 1 5.3485 -2.2487 0.5160 38 1 5.2334 -2.0664 -1.9543 39 1 3.7308 -3.0206 -1.9546 40 1 5.5865 -4.2823 -3.4470 41 1 4.9712 -6.9369 -3.6669 42 1 5.5815 -7.8363 -2.2114 43 1 8.5410 -8.0341 -2.3549 44 1 9.7286 -12.3877 -2.3449 45 1 7.3541 -5.8303 -6.0578 46 1 6.2729 -4.7295 -5.0976 47 1 8.1869 -3.6125 -4.0522 48 1 9.0786 -4.1676 -5.5336 49 1 9.3583 -5.4699 -2.9652 50 1 9.5516 -6.3585 -4.5379 51 1 1.6888 -2.1419 0.0003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203157872.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:08 Heat of formation + Delta-G solvation = 20.734904 kcal Electronic energy + Delta-G solvation = -29364.608163 eV Core-core repulsion = 25457.116568 eV Total energy + Delta-G solvation = -3907.491596 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.01061 -41.26768 -40.11077 -36.68281 -35.70496 -35.43914 -34.47865 -34.14241 -32.25711 -31.08135 -28.15400 -26.94154 -26.76431 -25.73355 -25.29953 -24.20797 -23.72510 -21.90118 -21.48835 -21.22201 -20.08008 -19.06276 -17.99650 -17.77721 -17.65722 -17.36643 -16.73879 -16.51230 -16.21335 -16.07378 -15.47579 -15.21120 -14.89923 -14.70932 -14.64753 -14.22728 -14.07908 -14.00869 -13.95675 -13.73384 -13.66620 -13.35892 -13.19379 -13.16057 -13.06984 -13.03861 -12.87055 -12.49860 -12.42000 -12.29848 -11.97347 -11.88238 -11.86778 -11.41003 -11.26791 -11.02954 -10.84142 -10.70551 -10.48967 -10.36464 -9.90869 -9.71473 -9.28954 -8.05813 -5.37802 0.14315 0.33290 1.32782 1.35710 1.41277 1.66900 2.22089 2.43437 2.83114 3.24452 3.29377 3.40731 3.49825 3.69834 3.75274 3.83925 3.90322 3.93272 3.96126 4.04835 4.06928 4.07771 4.16423 4.20657 4.24014 4.46199 4.55408 4.60587 4.64300 4.71007 4.75564 4.83042 4.87255 4.88110 4.94829 4.96807 5.01099 5.06042 5.11788 5.15108 5.20361 5.23816 5.25647 5.33575 5.38578 5.40280 5.56904 5.70582 5.76691 5.81477 6.19877 6.63158 7.03648 7.04446 7.32969 7.82242 7.99063 9.15473 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017453 B = 0.002101 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.896848 B =13324.485692 C =13760.882713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.134 4.134 3 C 0.078 3.922 4 N -0.507 5.507 5 C 0.080 3.920 6 C -0.125 4.125 7 C -0.056 4.056 8 C -0.122 4.122 9 C 0.507 3.493 10 O -0.591 6.591 11 N -0.701 5.701 12 C 0.160 3.840 13 H 0.076 0.924 14 C -0.171 4.171 15 C 0.167 3.833 16 H 0.071 0.929 17 N -0.731 5.731 18 C -0.225 4.225 19 H 0.064 0.936 20 C -0.059 4.059 21 N -0.980 5.980 22 Si 0.943 3.057 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.256 1.256 26 C -0.119 4.119 27 C -0.095 4.095 28 C -0.122 4.122 29 C -0.134 4.134 30 C -0.082 4.082 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.171 0.829 35 H 0.162 0.838 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.416 0.584 41 H 0.104 0.896 42 H 0.041 0.959 43 H 0.362 0.638 44 H 0.257 0.743 45 H 0.092 0.908 46 H 0.093 0.907 47 H 0.087 0.913 48 H 0.079 0.921 49 H 0.047 0.953 50 H 0.071 0.929 51 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.488 30.207 -0.804 34.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.136 4.136 3 C -0.079 4.079 4 N -0.215 5.215 5 C -0.076 4.076 6 C -0.127 4.127 7 C -0.095 4.095 8 C -0.161 4.161 9 C 0.295 3.705 10 O -0.471 6.471 11 N -0.353 5.353 12 C 0.054 3.946 13 H 0.094 0.906 14 C -0.212 4.212 15 C 0.056 3.944 16 H 0.089 0.911 17 N -0.371 5.371 18 C -0.356 4.356 19 H 0.082 0.918 20 C -0.251 4.251 21 N -0.630 5.630 22 Si 0.771 3.229 23 H -0.213 1.213 24 H -0.219 1.219 25 H -0.181 1.181 26 C -0.122 4.122 27 C -0.132 4.132 28 C -0.159 4.159 29 C -0.172 4.172 30 C -0.108 4.108 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.188 0.812 35 H 0.179 0.821 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.255 0.745 41 H 0.123 0.877 42 H 0.060 0.940 43 H 0.195 0.805 44 H 0.066 0.934 45 H 0.110 0.890 46 H 0.111 0.889 47 H 0.106 0.894 48 H 0.097 0.903 49 H 0.066 0.934 50 H 0.090 0.910 51 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -15.833 30.451 -0.183 34.322 hybrid contribution 0.592 -1.311 0.932 1.714 sum -15.241 29.140 0.748 32.893 Atomic orbital electron populations 1.20794 0.88231 1.04245 1.03391 1.21235 0.99023 0.93568 0.99790 1.23068 0.89686 0.98791 0.96369 1.67687 1.09450 1.31907 1.12475 1.22876 1.00921 0.87255 0.96563 1.20854 0.94843 0.96090 1.00933 1.20161 0.99807 0.93350 0.96140 1.21643 1.01669 0.93956 0.98862 1.21385 0.79427 0.86503 0.83184 1.90726 1.57250 1.66043 1.33109 1.45890 1.54522 1.25721 1.09154 1.21772 0.92438 0.83748 0.96641 0.90567 1.24143 0.99446 0.96881 1.00767 1.21067 0.89555 0.89618 0.94117 0.91072 1.42411 1.47839 1.05360 1.41526 1.19070 1.17719 0.84382 1.14432 0.91788 1.25362 1.01584 0.95878 1.02236 1.69846 1.41853 1.06132 1.45185 0.85584 0.78571 0.78751 0.79973 1.21254 1.21869 1.18057 1.23429 0.96643 0.95479 0.96607 1.22534 0.99238 0.96372 0.95088 1.22781 0.97474 0.95764 0.99907 1.22664 0.95472 0.98753 1.00297 1.21714 0.93327 0.99275 0.96468 0.90199 0.89884 0.90445 0.81184 0.82068 0.90936 0.90835 0.86392 0.86422 0.74523 0.87720 0.93977 0.80469 0.93354 0.88963 0.88864 0.89402 0.90254 0.93410 0.91005 0.83369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 10.04 71.24 0.72 0.07 16 2 C -0.13 -1.56 5.90 -19.77 -0.12 -1.68 16 3 C 0.08 1.09 10.86 84.69 0.92 2.01 16 4 N -0.51 -9.35 10.36 -195.85 -2.03 -11.38 16 5 C 0.08 1.31 10.86 84.67 0.92 2.23 16 6 C -0.13 -1.81 5.15 -19.77 -0.10 -1.92 16 7 C -0.06 -0.87 4.66 29.85 0.14 -0.73 16 8 C -0.12 -1.56 5.68 29.85 0.17 -1.39 16 9 C 0.51 11.36 7.83 87.66 0.69 12.05 16 10 O -0.59 -19.75 15.58 -3.05 -0.05 -19.79 16 11 N -0.70 -14.05 5.28 -441.14 -2.33 -16.38 16 12 C 0.16 4.60 4.03 45.28 0.18 4.78 16 13 H 0.08 2.81 7.46 -2.39 -0.02 2.79 16 14 C -0.17 -5.44 7.68 31.23 0.24 -5.20 16 15 C 0.17 6.05 4.36 45.28 0.20 6.25 16 16 H 0.07 2.63 8.10 -2.38 -0.02 2.61 16 17 N -0.73 -34.27 4.90 -321.55 -1.57 -35.84 16 18 C -0.23 -12.83 10.45 84.03 0.88 -11.95 16 19 H 0.06 3.94 8.06 -2.91 -0.02 3.92 16 20 C -0.06 -3.52 5.50 84.86 0.47 -3.06 16 21 N -0.98 -63.30 13.97 21.65 0.30 -62.99 16 22 Si 0.94 47.25 27.74 68.60 1.90 49.16 16 23 H -0.29 -14.36 7.11 99.48 0.71 -13.66 16 24 H -0.29 -14.64 7.11 99.48 0.71 -13.94 16 25 H -0.26 -11.77 6.52 99.48 0.65 -11.13 16 26 C -0.12 -3.22 0.92 -52.31 -0.05 -3.27 16 27 C -0.09 -1.71 7.47 30.88 0.23 -1.48 16 28 C -0.12 -2.25 8.08 31.23 0.25 -1.99 16 29 C -0.13 -3.71 7.49 30.88 0.23 -3.48 16 30 C -0.08 -1.03 9.55 22.47 0.21 -0.82 16 31 H 0.08 0.40 8.14 -2.38 -0.02 0.38 16 32 H 0.08 0.29 8.09 -2.39 -0.02 0.28 16 33 H 0.08 0.36 8.10 -2.39 -0.02 0.34 16 34 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 35 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 36 H 0.07 1.30 8.05 -2.39 -0.02 1.28 16 37 H 0.07 1.32 8.05 -2.39 -0.02 1.30 16 38 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.42 5.20 6.72 -92.71 -0.62 4.57 16 41 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 42 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.36 17.00 5.67 -92.71 -0.53 16.47 16 44 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 45 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.09 1.10 6.42 -2.39 -0.02 1.09 16 47 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.08 1.28 8.14 -2.39 -0.02 1.27 16 49 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 50 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 51 H 0.15 1.38 8.06 -2.91 -0.02 1.35 16 Total: -1.00 -78.29 413.70 2.13 -76.16 By element: Atomic # 1 Polarization: 30.93 SS G_CDS: -0.28 Total: 30.65 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: 6.18 Total: -9.58 kcal Atomic # 7 Polarization: -120.97 SS G_CDS: -5.63 Total: -126.60 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.05 Total: -19.79 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 1.90 Total: 49.16 kcal Total: -78.29 2.13 -76.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203157872.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.899 kcal (2) G-P(sol) polarization free energy of solvation -78.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds