Wall clock time and date at job start Wed Apr 1 2020 02:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38220 * 120.41901 * 2 1 4 4 N 1.31857 * 120.76198 * 180.02562 * 3 2 1 5 5 C 1.31883 * 121.72627 * 359.97438 * 4 3 2 6 6 C 1.38177 * 120.76725 * 359.97438 * 5 4 3 7 7 C 1.50705 * 120.42229 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.46911 * 269.97706 * 7 6 5 9 9 C 1.50701 * 109.46905 * 179.97438 * 8 7 6 10 10 O 1.21288 * 119.99784 * 0.02562 * 9 8 7 11 11 N 1.34770 * 120.00174 * 179.97438 * 9 8 7 12 12 C 1.46504 * 120.00417 * 180.02562 * 11 9 8 13 13 H 1.09001 * 112.88335 * 25.32863 * 12 11 9 14 14 C 1.53951 * 113.65629 * 253.98756 * 12 11 9 15 15 C 1.53949 * 87.29454 * 270.25679 * 14 12 11 16 16 H 1.08995 * 113.66045 * 89.74015 * 15 14 12 17 17 N 1.46500 * 113.66392 * 220.70422 * 15 14 12 18 18 C 1.36938 * 119.99841 * 255.50039 * 17 15 14 19 19 H 1.07994 * 119.99962 * 359.97438 * 18 17 15 20 20 C 1.38811 * 120.00059 * 179.97438 * 18 17 15 21 21 N 1.31625 * 119.99819 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00180 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47080 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47113 * 120.00096 * 22 20 18 25 25 H 1.48495 * 109.47421 * 240.00104 * 22 20 18 26 26 C 1.52902 * 113.66661 * 156.68090 * 12 11 9 27 27 C 1.52909 * 121.14093 * 323.84242 * 26 12 11 28 28 C 1.53946 * 86.78784 * 209.38220 * 27 26 12 29 29 C 1.52908 * 121.13655 * 215.28799 * 26 12 11 30 30 C 1.38628 * 120.41772 * 180.02562 * 2 1 3 31 31 H 1.09005 * 109.47249 * 270.00091 * 1 2 3 32 32 H 1.09003 * 109.46937 * 29.99944 * 1 2 3 33 33 H 1.09000 * 109.47377 * 149.99926 * 1 2 3 34 34 H 1.07997 * 119.62169 * 0.02842 * 3 2 1 35 35 H 1.08007 * 119.61759 * 180.02562 * 5 4 3 36 36 H 1.08998 * 109.46760 * 29.97576 * 7 6 5 37 37 H 1.09001 * 109.47100 * 149.97252 * 7 6 5 38 38 H 1.08998 * 109.47302 * 299.99538 * 8 7 6 39 39 H 1.08996 * 109.47174 * 60.00019 * 8 7 6 40 40 H 0.97005 * 119.99852 * 359.97438 * 11 9 8 41 41 H 1.08994 * 113.58204 * 24.86598 * 14 12 11 42 42 H 1.09006 * 113.57800 * 155.57230 * 14 12 11 43 43 H 0.96994 * 120.00173 * 75.49031 * 17 15 14 44 44 H 0.97001 * 119.99604 * 179.97438 * 21 20 18 45 45 H 1.09001 * 113.66013 * 323.85829 * 27 26 12 46 46 H 1.08999 * 113.66054 * 94.90691 * 27 26 12 47 47 H 1.09002 * 113.58109 * 270.13704 * 28 27 26 48 48 H 1.08994 * 113.58555 * 139.33773 * 28 27 26 49 49 H 1.09002 * 113.65857 * 265.09454 * 29 26 12 50 50 H 1.09007 * 113.66822 * 36.14633 * 29 26 12 51 51 H 1.07998 * 120.79388 * 0.25113 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1919 0.0000 4 7 3.5253 1.1998 -0.0005 5 6 4.2256 0.0822 -0.0005 6 6 3.5947 -1.1471 0.0005 7 6 4.4026 -2.4194 0.0011 8 6 4.6749 -2.8511 -1.4413 9 6 5.4833 -4.1230 -1.4407 10 8 5.8090 -4.6340 -0.3901 11 7 5.8433 -4.6931 -2.6076 12 6 6.6287 -5.9299 -2.6071 13 1 6.4942 -6.5171 -1.6987 14 6 8.1036 -5.7252 -2.9978 15 6 7.6733 -5.9570 -4.4576 16 1 7.3825 -5.0446 -4.9781 17 7 8.6150 -6.7754 -5.2254 18 6 9.4460 -6.1862 -6.1406 19 1 9.4068 -5.1183 -6.2966 20 6 10.3387 -6.9615 -6.8677 21 7 10.3869 -8.2630 -6.6772 22 14 11.4718 -6.1579 -8.1166 23 1 11.2230 -4.6941 -8.1407 24 1 12.8851 -6.4132 -7.7390 25 1 11.2084 -6.7275 -9.4625 26 6 6.4884 -6.7465 -3.8921 27 6 5.1566 -6.8221 -4.6396 28 6 5.5995 -8.2190 -5.1111 29 6 6.4983 -8.2753 -3.8625 30 6 2.2088 -1.1955 -0.0005 31 1 -0.3634 0.0000 1.0277 32 1 -0.3633 0.8900 -0.5138 33 1 -0.3634 -0.8900 -0.5138 34 1 1.6675 2.1276 0.0005 35 1 5.3046 0.1284 -0.0005 36 1 5.3490 -2.2485 0.5141 37 1 3.8464 -3.2027 0.5160 38 1 3.7285 -3.0220 -1.9542 39 1 5.2311 -2.0678 -1.9561 40 1 5.5818 -4.2850 -3.4478 41 1 8.4696 -4.7166 -2.8060 42 1 8.7686 -6.4970 -2.6101 43 1 8.6501 -7.7346 -5.0854 44 1 11.0105 -8.8049 -7.1856 45 1 4.2867 -6.8374 -3.9830 46 1 5.0666 -6.0959 -5.4474 47 1 6.1557 -8.2069 -6.0485 48 1 4.7969 -8.9564 -5.1042 49 1 7.4802 -8.7101 -4.0494 50 1 6.0054 -8.6992 -2.9874 51 1 1.6888 -2.1420 -0.0050 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203157874.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:12 Heat of formation + Delta-G solvation = 18.428983 kcal Electronic energy + Delta-G solvation = -29170.016913 eV Core-core repulsion = 25262.425325 eV Total energy + Delta-G solvation = -3907.591588 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.91158 -41.24837 -40.10510 -36.38484 -35.81431 -35.48972 -34.46466 -33.78485 -31.91058 -30.91865 -28.13597 -26.88981 -26.64880 -25.89182 -25.44763 -24.04747 -23.58216 -22.16127 -21.48910 -21.05564 -19.60582 -18.78077 -18.09552 -17.80342 -17.64506 -17.17718 -16.72660 -16.39395 -16.26149 -15.85416 -15.50115 -15.22329 -15.17247 -14.73112 -14.34970 -14.20995 -13.99169 -13.93514 -13.77665 -13.64506 -13.40377 -13.30404 -13.17844 -13.14986 -13.05201 -12.88168 -12.78598 -12.48942 -12.39001 -12.10968 -11.94693 -11.91347 -11.86000 -11.29519 -11.19519 -10.88552 -10.86720 -10.67763 -10.48161 -10.34716 -9.87597 -9.70175 -8.94983 -7.93771 -5.20957 0.15736 0.35364 1.46725 1.47593 1.56886 1.68695 2.17973 2.56184 2.84449 3.37450 3.49653 3.49872 3.67029 3.74560 3.79693 3.86046 3.94268 3.97406 4.02661 4.08492 4.09289 4.14390 4.22525 4.23446 4.29008 4.48898 4.59971 4.63594 4.68844 4.73597 4.76418 4.84851 4.87897 4.89557 4.91549 4.99232 5.04176 5.09943 5.14044 5.17232 5.20510 5.25457 5.30502 5.35241 5.39983 5.50178 5.60269 5.64720 5.71946 5.83372 6.28632 6.63854 7.05363 7.32274 7.35583 8.13254 8.36002 9.29485 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015261 B = 0.002014 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.306407 B =13898.665106 C =14731.883087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.135 4.135 3 C 0.076 3.924 4 N -0.509 5.509 5 C 0.078 3.922 6 C -0.125 4.125 7 C -0.054 4.054 8 C -0.124 4.124 9 C 0.513 3.487 10 O -0.585 6.585 11 N -0.696 5.696 12 C 0.150 3.850 13 H 0.086 0.914 14 C -0.174 4.174 15 C 0.178 3.822 16 H 0.081 0.919 17 N -0.721 5.721 18 C -0.237 4.237 19 H 0.076 0.924 20 C -0.076 4.076 21 N -0.968 5.968 22 Si 0.968 3.032 23 H -0.266 1.266 24 H -0.298 1.298 25 H -0.294 1.294 26 C -0.111 4.111 27 C -0.107 4.107 28 C -0.132 4.132 29 C -0.115 4.115 30 C -0.080 4.080 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.170 0.830 35 H 0.159 0.841 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.119 0.881 39 H 0.110 0.890 40 H 0.413 0.587 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.377 0.623 44 H 0.249 0.751 45 H 0.100 0.900 46 H 0.070 0.930 47 H 0.056 0.944 48 H 0.080 0.920 49 H 0.046 0.954 50 H 0.097 0.903 51 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.616 14.210 12.295 30.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.137 4.137 3 C -0.081 4.081 4 N -0.217 5.217 5 C -0.079 4.079 6 C -0.127 4.127 7 C -0.092 4.092 8 C -0.164 4.164 9 C 0.302 3.698 10 O -0.465 6.465 11 N -0.346 5.346 12 C 0.044 3.956 13 H 0.104 0.896 14 C -0.216 4.216 15 C 0.068 3.932 16 H 0.098 0.902 17 N -0.360 5.360 18 C -0.369 4.369 19 H 0.094 0.906 20 C -0.268 4.268 21 N -0.619 5.619 22 Si 0.798 3.202 23 H -0.190 1.190 24 H -0.226 1.226 25 H -0.222 1.222 26 C -0.113 4.113 27 C -0.144 4.144 28 C -0.169 4.169 29 C -0.153 4.153 30 C -0.106 4.106 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.187 0.813 35 H 0.177 0.823 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.137 0.863 39 H 0.128 0.872 40 H 0.250 0.750 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.211 0.789 44 H 0.058 0.942 45 H 0.118 0.882 46 H 0.089 0.911 47 H 0.074 0.926 48 H 0.099 0.901 49 H 0.064 0.936 50 H 0.115 0.885 51 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -22.850 14.811 12.893 30.128 hybrid contribution 1.059 -0.964 -1.015 1.755 sum -21.791 13.847 11.878 28.420 Atomic orbital electron populations 1.20791 0.88151 1.04229 1.03434 1.21245 0.99064 0.93577 0.99765 1.23064 0.89660 0.98873 0.96484 1.67675 1.09530 1.32013 1.12516 1.22876 1.00871 0.87437 0.96690 1.20879 0.94953 0.96084 1.00825 1.20157 0.99842 0.93370 0.95848 1.21646 1.01721 0.93958 0.99070 1.21235 0.79242 0.86426 0.82904 1.90696 1.57448 1.65711 1.32676 1.45554 1.54290 1.25484 1.09255 1.21325 0.90635 0.86006 0.97677 0.89600 1.24123 0.96413 1.00687 1.00403 1.21630 0.88570 0.93539 0.89457 0.90161 1.42562 1.41791 1.06833 1.44772 1.19690 1.11944 0.92652 1.12622 0.90593 1.25509 1.02298 0.96099 1.02931 1.69819 1.41128 1.05057 1.45857 0.85141 0.78282 0.78134 0.78621 1.19015 1.22571 1.22174 1.23329 0.97036 0.95873 0.95031 1.22605 0.95606 0.96940 0.99278 1.22660 0.99007 0.98256 0.96982 1.22526 0.99808 0.93724 0.99204 1.21729 0.93197 0.99328 0.96319 0.90073 0.90079 0.90309 0.81318 0.82329 0.90868 0.90229 0.86258 0.87168 0.75010 0.92529 0.91800 0.78927 0.94187 0.88180 0.91081 0.92561 0.90126 0.93558 0.88474 0.82955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.04 71.23 0.72 0.08 16 2 C -0.13 -1.59 5.90 -19.78 -0.12 -1.71 16 3 C 0.08 1.13 10.86 84.68 0.92 2.05 16 4 N -0.51 -10.01 10.36 -195.85 -2.03 -12.04 16 5 C 0.08 1.35 10.86 84.67 0.92 2.27 16 6 C -0.13 -1.85 5.15 -19.77 -0.10 -1.95 16 7 C -0.05 -0.81 4.66 29.85 0.14 -0.67 16 8 C -0.12 -1.69 5.68 29.85 0.17 -1.53 16 9 C 0.51 11.39 7.83 87.66 0.69 12.08 16 10 O -0.59 -18.13 15.60 -3.05 -0.05 -18.18 16 11 N -0.70 -15.08 5.06 -441.15 -2.23 -17.32 16 12 C 0.15 4.26 4.09 45.28 0.19 4.44 16 13 H 0.09 2.67 7.50 -2.39 -0.02 2.65 16 14 C -0.17 -6.10 7.68 31.23 0.24 -5.86 16 15 C 0.18 6.58 4.28 45.38 0.19 6.77 16 16 H 0.08 2.85 8.12 -2.39 -0.02 2.83 16 17 N -0.72 -34.94 5.36 -321.11 -1.72 -36.66 16 18 C -0.24 -12.80 9.98 84.03 0.84 -11.96 16 19 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 20 C -0.08 -4.31 5.50 84.86 0.47 -3.85 16 21 N -0.97 -58.62 13.06 21.65 0.28 -58.34 16 22 Si 0.97 45.81 29.55 68.60 2.03 47.84 16 23 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 24 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 25 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 26 C -0.11 -3.25 0.92 -52.22 -0.05 -3.30 16 27 C -0.11 -2.57 7.46 30.88 0.23 -2.34 16 28 C -0.13 -3.76 8.08 31.23 0.25 -3.51 16 29 C -0.11 -3.52 7.46 30.88 0.23 -3.29 16 30 C -0.08 -0.99 9.55 22.47 0.21 -0.77 16 31 H 0.08 0.38 8.14 -2.38 -0.02 0.36 16 32 H 0.08 0.32 8.09 -2.39 -0.02 0.30 16 33 H 0.08 0.34 8.10 -2.39 -0.02 0.32 16 34 H 0.17 1.70 8.06 -2.91 -0.02 1.68 16 35 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 36 H 0.07 1.30 8.05 -2.39 -0.02 1.28 16 37 H 0.08 1.27 8.05 -2.39 -0.02 1.25 16 38 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.41 6.96 8.58 -92.70 -0.80 6.17 16 41 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 43 H 0.38 19.75 5.88 -92.71 -0.55 19.20 16 44 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 45 H 0.10 1.93 8.14 -2.39 -0.02 1.92 16 46 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 48 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 49 H 0.05 1.74 6.44 -2.39 -0.02 1.72 16 50 H 0.10 2.53 8.14 -2.38 -0.02 2.51 16 51 H 0.15 1.25 8.06 -2.91 -0.02 1.22 16 Total: -1.00 -71.74 416.84 2.01 -69.74 By element: Atomic # 1 Polarization: 38.40 SS G_CDS: -0.41 Total: 37.99 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: 6.14 Total: -13.03 kcal Atomic # 7 Polarization: -118.66 SS G_CDS: -5.70 Total: -124.35 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.05 Total: -18.18 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -71.74 2.01 -69.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203157874.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.166 kcal (2) G-P(sol) polarization free energy of solvation -71.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds