Wall clock time and date at job start Wed Apr 1 2020 02:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46843 * 2 1 4 4 F 1.39897 * 109.47312 * 240.00010 * 2 1 3 5 5 C 1.50700 * 109.46854 * 119.99944 * 2 1 3 6 6 O 1.21280 * 119.99999 * 359.97438 * 5 2 1 7 7 N 1.34770 * 119.99951 * 180.02562 * 5 2 1 8 8 C 1.46500 * 120.00300 * 180.27666 * 7 5 2 9 9 C 1.52995 * 109.47465 * 179.72562 * 8 7 5 10 10 C 1.52999 * 109.52100 * 59.99959 * 9 8 7 11 11 C 1.53123 * 109.52028 * 299.87228 * 9 8 7 12 12 C 1.53048 * 109.27054 * 182.50424 * 11 9 8 13 13 N 1.46848 * 109.57568 * 59.08413 * 12 11 9 14 14 C 1.46903 * 110.99793 * 174.19059 * 13 12 11 15 15 C 1.50701 * 109.47219 * 190.59936 * 14 13 12 16 16 O 1.21293 * 119.99396 * 6.27002 * 15 14 13 17 17 N 1.34771 * 120.00303 * 186.27077 * 15 14 13 18 18 C 1.37092 * 120.00222 * 180.02562 * 17 15 14 19 19 H 1.08005 * 119.99836 * 359.97438 * 18 17 15 20 20 C 1.38949 * 119.99873 * 180.02562 * 18 17 15 21 21 N 1.31404 * 120.00571 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99737 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47472 * 59.99765 * 22 20 18 24 24 H 1.48496 * 109.46955 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47056 * 299.99445 * 22 20 18 26 26 C 1.46839 * 111.20079 * 298.28773 * 13 12 11 27 27 C 1.53041 * 109.52270 * 61.74229 * 26 13 12 28 28 H 1.08997 * 109.47133 * 300.00324 * 1 2 3 29 29 H 1.09004 * 109.46796 * 59.99857 * 1 2 3 30 30 H 1.08997 * 109.47164 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47146 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47612 * 299.99425 * 3 2 1 33 33 H 1.09001 * 109.46962 * 60.00386 * 3 2 1 34 34 H 0.97005 * 119.99921 * 0.02562 * 7 5 2 35 35 H 1.09003 * 109.47103 * 299.72918 * 8 7 5 36 36 H 1.08998 * 109.47131 * 59.72093 * 8 7 5 37 37 H 1.08996 * 109.47411 * 60.00169 * 10 9 8 38 38 H 1.09010 * 109.46884 * 180.02562 * 10 9 8 39 39 H 1.09004 * 109.47193 * 299.99576 * 10 9 8 40 40 H 1.08992 * 109.50257 * 302.37960 * 11 9 8 41 41 H 1.08991 * 109.50346 * 62.50164 * 11 9 8 42 42 H 1.08999 * 109.41103 * 299.06312 * 12 11 9 43 43 H 1.08999 * 109.45799 * 179.13224 * 12 11 9 44 44 H 1.09002 * 109.47284 * 310.60006 * 14 13 12 45 45 H 1.08997 * 109.47054 * 70.59730 * 14 13 12 46 46 H 0.97001 * 119.99565 * 0.02562 * 17 15 14 47 47 H 0.96996 * 120.00764 * 180.02562 * 21 20 18 48 48 H 1.09004 * 109.46316 * 301.72997 * 26 13 12 49 49 H 1.08992 * 109.46450 * 181.76095 * 26 13 12 50 50 H 1.08998 * 109.50106 * 180.88321 * 27 26 13 51 51 H 1.08993 * 109.53615 * 60.78047 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 9 1.9964 -0.6595 -1.1422 5 6 2.0323 -0.7104 1.2305 6 8 1.2442 -1.1709 2.0290 7 7 3.3573 -0.8331 1.4441 8 6 3.8457 -1.5290 2.6372 9 6 5.3756 -1.5333 2.6347 10 6 5.8909 -0.0927 2.6387 11 6 5.8833 -2.2550 1.3833 12 6 7.4124 -2.3109 1.4178 13 7 7.8517 -3.0191 2.6268 14 6 9.3080 -3.2121 2.6240 15 6 9.6916 -4.1578 3.7328 16 8 8.8301 -4.7133 4.3812 17 7 10.9918 -4.3862 4.0041 18 6 11.3408 -5.2469 5.0125 19 1 10.5737 -5.7416 5.5898 20 6 12.6813 -5.4819 5.2924 21 7 13.6147 -4.8797 4.5904 22 14 13.1568 -6.6542 6.6670 23 1 12.6086 -8.0038 6.3784 24 1 14.6367 -6.7315 6.7618 25 1 12.6032 -6.1596 7.9531 26 6 7.4162 -2.3175 3.8410 27 6 5.8872 -2.2632 3.8798 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1301 1.4425 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.9877 -0.4638 0.8059 35 1 3.4852 -1.0171 3.5294 36 1 3.4795 -2.5556 2.6344 37 1 5.5309 0.4196 3.5309 38 1 6.9810 -0.0967 2.6365 39 1 5.5281 0.4254 1.7509 40 1 5.4834 -3.2687 1.3605 41 1 5.5579 -1.7147 0.4945 42 1 7.8118 -1.2967 1.4255 43 1 7.7764 -2.8377 0.5357 44 1 9.6172 -3.6307 1.6662 45 1 9.8019 -2.2526 2.7776 46 1 11.6807 -3.9415 3.4858 47 1 14.5505 -5.0440 4.7856 48 1 7.8156 -1.3033 3.8375 49 1 7.7831 -2.8491 4.7190 50 1 5.5647 -1.7287 4.7732 51 1 5.4869 -3.2768 3.8976 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270853161.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:50 Heat of formation + Delta-G solvation = -152.594915 kcal Electronic energy + Delta-G solvation = -30921.850859 eV Core-core repulsion = 26576.073893 eV Total energy + Delta-G solvation = -4345.776965 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -48.95623 -41.41771 -40.57373 -39.64090 -36.93552 -35.85924 -34.82225 -34.21298 -33.23697 -31.81275 -30.07780 -28.52500 -28.04447 -27.53490 -25.87321 -24.64261 -23.93728 -22.50718 -21.15956 -20.97831 -19.86680 -19.42591 -18.93534 -17.72338 -17.39190 -17.08702 -16.80670 -16.55449 -16.31377 -16.05443 -15.98686 -15.82436 -15.53827 -15.42378 -15.27886 -14.93736 -14.45686 -14.32461 -14.11765 -13.88548 -13.49600 -13.46394 -13.32049 -13.30739 -13.10195 -13.05904 -13.03669 -12.92300 -12.84415 -12.52952 -12.48607 -12.41993 -12.12962 -12.05780 -12.00290 -11.62062 -11.53879 -11.34797 -11.18547 -10.87236 -10.24436 -10.21415 -9.98501 -9.07647 -8.45466 -5.93830 1.30844 1.39504 1.41182 1.51895 1.92090 2.08078 2.28918 2.80385 3.21471 3.25803 3.40206 3.45003 3.57403 3.63663 3.70898 3.77597 3.80900 4.19908 4.25110 4.31804 4.33975 4.41879 4.50239 4.56338 4.59907 4.62324 4.65139 4.66248 4.69600 4.74836 4.78653 4.81417 4.95970 4.98976 5.03072 5.08031 5.11269 5.13716 5.15512 5.26002 5.30941 5.33246 5.41453 5.49082 5.93347 6.14227 6.32047 6.32674 6.62830 6.98616 7.14716 7.58882 8.15376 8.71683 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.033517 B = 0.001857 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.190881 B =15078.325040 C =15353.313228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.102 3.898 3 C -0.170 4.170 4 F -0.202 7.202 5 C 0.493 3.507 6 O -0.564 6.564 7 N -0.701 5.701 8 C 0.136 3.864 9 C -0.062 4.062 10 C -0.142 4.142 11 C -0.100 4.100 12 C 0.054 3.946 13 N -0.536 5.536 14 C 0.059 3.941 15 C 0.440 3.560 16 O -0.615 6.615 17 N -0.576 5.576 18 C -0.332 4.332 19 H 0.077 0.923 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.991 3.009 23 H -0.273 1.273 24 H -0.270 1.270 25 H -0.272 1.272 26 C 0.062 3.938 27 C -0.095 4.095 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.414 0.586 35 H 0.070 0.930 36 H 0.053 0.947 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.056 0.944 41 H 0.091 0.909 42 H 0.052 0.948 43 H 0.081 0.919 44 H 0.109 0.891 45 H 0.066 0.934 46 H 0.396 0.604 47 H 0.277 0.723 48 H 0.042 0.958 49 H 0.050 0.950 50 H 0.077 0.923 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.199 18.085 -12.914 29.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.081 3.919 3 C -0.228 4.228 4 F -0.183 7.183 5 C 0.277 3.723 6 O -0.443 6.443 7 N -0.354 5.354 8 C 0.012 3.988 9 C -0.062 4.062 10 C -0.199 4.199 11 C -0.138 4.138 12 C -0.073 4.073 13 N -0.261 5.261 14 C -0.072 4.072 15 C 0.228 3.772 16 O -0.500 6.500 17 N -0.214 5.214 18 C -0.461 4.461 19 H 0.095 0.905 20 C -0.213 4.213 21 N -0.562 5.562 22 Si 0.815 3.185 23 H -0.199 1.199 24 H -0.194 1.194 25 H -0.198 1.198 26 C -0.066 4.066 27 C -0.133 4.133 28 H 0.103 0.897 29 H 0.116 0.884 30 H 0.076 0.924 31 H 0.102 0.898 32 H 0.117 0.883 33 H 0.108 0.892 34 H 0.253 0.747 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.109 0.891 42 H 0.071 0.929 43 H 0.100 0.900 44 H 0.127 0.873 45 H 0.084 0.916 46 H 0.229 0.771 47 H 0.087 0.913 48 H 0.060 0.940 49 H 0.068 0.932 50 H 0.095 0.905 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.307 16.905 -11.932 28.992 hybrid contribution 1.584 -0.106 0.367 1.630 sum -18.723 16.799 -11.566 27.686 Atomic orbital electron populations 1.22203 0.90529 1.03905 1.05051 1.21319 0.97339 0.94071 0.79165 1.22452 1.03423 0.90898 1.05995 1.92918 1.90366 1.83140 1.51847 1.21330 0.82922 0.79834 0.88185 1.90728 1.56260 1.48974 1.48308 1.45968 1.06597 1.57132 1.25694 1.21336 0.93229 0.96660 0.87560 1.20738 0.92601 0.97020 0.95846 1.21966 1.01526 0.93508 1.02948 1.21628 0.94306 1.00659 0.97223 1.22229 0.96098 0.97137 0.91798 1.61430 1.10525 1.51000 1.03184 1.21705 0.89612 0.97793 0.98089 1.20848 0.82348 0.86373 0.87652 1.90483 1.49943 1.54924 1.54687 1.41942 1.06192 1.41151 1.32069 1.19594 0.92387 1.22274 1.11877 0.90481 1.26004 0.94842 0.99603 1.00833 1.69656 1.01179 1.43849 1.41466 0.85017 0.77369 0.78177 0.77935 1.19879 1.19449 1.19765 1.22028 0.96151 0.95609 0.92833 1.21464 0.93948 1.00288 0.97609 0.89704 0.88425 0.92447 0.89768 0.88282 0.89219 0.74741 0.91175 0.92839 0.91938 0.92226 0.90639 0.92548 0.89075 0.92950 0.90026 0.87328 0.91648 0.77074 0.91349 0.94004 0.93179 0.90455 0.92874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 8.22 71.98 0.59 -1.38 16 2 C 0.10 1.35 1.54 -11.54 -0.02 1.34 16 3 C -0.17 -1.06 8.82 71.98 0.64 -0.43 16 4 F -0.20 -3.24 16.79 44.97 0.76 -2.49 16 5 C 0.49 9.31 6.87 87.66 0.60 9.92 16 6 O -0.56 -15.28 15.98 -3.03 -0.05 -15.33 16 7 N -0.70 -10.59 4.87 -463.08 -2.26 -12.85 16 8 C 0.14 2.51 4.57 86.38 0.39 2.90 16 9 C -0.06 -1.09 0.53 -52.10 -0.03 -1.12 16 10 C -0.14 -1.92 7.73 71.98 0.56 -1.36 16 11 C -0.10 -1.84 4.68 30.65 0.14 -1.69 16 12 C 0.05 1.16 5.21 86.33 0.45 1.61 16 13 N -0.54 -16.71 4.35 -900.92 -3.92 -20.62 16 14 C 0.06 2.02 5.45 85.56 0.47 2.49 16 15 C 0.44 21.03 7.31 87.66 0.64 21.67 16 16 O -0.61 -34.23 14.29 -3.07 -0.04 -34.28 16 17 N -0.58 -29.66 5.29 -306.99 -1.62 -31.28 16 18 C -0.33 -18.95 9.68 84.04 0.81 -18.14 16 19 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 20 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 21 N -0.92 -49.76 13.05 21.66 0.28 -49.48 16 22 Si 0.99 43.28 29.55 68.60 2.03 45.31 16 23 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 24 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 25 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 26 C 0.06 1.89 4.87 86.33 0.42 2.31 16 27 C -0.09 -2.36 4.88 30.65 0.15 -2.21 16 28 H 0.08 1.01 8.10 -2.39 -0.02 0.99 16 29 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.06 0.92 8.10 -2.39 -0.02 0.90 16 31 H 0.08 0.34 7.56 -2.38 -0.02 0.33 16 32 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.41 4.17 5.61 -92.70 -0.52 3.65 16 35 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.06 0.91 4.93 -2.38 -0.01 0.90 16 39 H 0.07 0.65 6.87 -2.39 -0.02 0.64 16 40 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 41 H 0.09 1.15 6.95 -2.39 -0.02 1.13 16 42 H 0.05 0.94 6.52 -2.39 -0.02 0.93 16 43 H 0.08 1.63 8.01 -2.39 -0.02 1.62 16 44 H 0.11 3.27 7.98 -2.39 -0.02 3.26 16 45 H 0.07 1.98 8.12 -2.39 -0.02 1.96 16 46 H 0.40 19.30 7.90 -92.71 -0.73 18.57 16 47 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 48 H 0.04 1.13 6.51 -2.38 -0.02 1.11 16 49 H 0.05 2.02 6.06 -2.39 -0.01 2.01 16 50 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 51 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -73.78 399.30 1.16 -72.62 By element: Atomic # 1 Polarization: 33.05 SS G_CDS: -0.30 Total: 32.75 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: 6.29 Total: 15.66 kcal Atomic # 7 Polarization: -106.72 SS G_CDS: -7.51 Total: -114.24 kcal Atomic # 8 Polarization: -49.52 SS G_CDS: -0.09 Total: -49.61 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.76 Total: -2.49 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -73.78 1.16 -72.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270853161.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.978 kcal (2) G-P(sol) polarization free energy of solvation -73.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds