Wall clock time and date at job start Wed Apr 1 2020 02:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38664 * 120.42087 * 2 1 4 4 C 1.38626 * 118.42292 * 179.97438 * 3 2 1 5 5 C 1.38227 * 119.15814 * 359.97438 * 4 3 2 6 6 N 1.31853 * 120.76544 * 359.72200 * 5 4 3 7 7 C 1.31878 * 121.72334 * 0.56925 * 6 5 4 8 8 C 1.50706 * 119.61960 * 179.70804 * 7 6 5 9 9 N 1.46897 * 109.46900 * 269.73103 * 8 7 6 10 10 C 1.47656 * 111.00693 * 69.87035 * 9 8 7 11 11 C 1.54526 * 107.05710 * 123.12051 * 10 9 8 12 12 C 1.54882 * 102.58997 * 23.00112 * 11 10 9 13 13 H 1.08998 * 110.41593 * 80.15835 * 12 11 10 14 14 C 1.48276 * 110.99827 * 190.43903 * 9 8 7 15 15 H 1.09004 * 111.35495 * 92.74560 * 14 9 8 16 16 C 1.54912 * 108.80615 * 328.65219 * 14 9 8 17 17 C 1.52887 * 109.57777 * 182.99786 * 16 14 9 18 18 C 1.50349 * 109.30648 * 52.99203 * 17 16 14 19 19 O 1.21287 * 118.79616 * 158.36478 * 18 17 16 20 20 N 1.33346 * 122.40191 * 338.34611 * 18 17 16 21 21 C 1.46494 * 117.29030 * 179.80034 * 20 18 17 22 22 C 1.52998 * 109.47353 * 269.97879 * 21 20 18 23 23 C 1.50695 * 109.47313 * 180.02562 * 22 21 20 24 24 H 1.07998 * 120.00208 * 359.97438 * 23 22 21 25 25 C 1.37878 * 119.99914 * 179.97438 * 23 22 21 26 26 N 1.31513 * 120.00184 * 0.02562 * 25 23 22 27 27 Si 1.86802 * 120.00098 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.47169 * 90.00317 * 27 25 23 29 29 H 1.48498 * 109.47130 * 210.00609 * 27 25 23 30 30 H 1.48500 * 109.47263 * 330.00433 * 27 25 23 31 31 H 1.09001 * 109.47185 * 270.02531 * 1 2 3 32 32 H 1.09001 * 109.46984 * 30.02279 * 1 2 3 33 33 H 1.09001 * 109.47353 * 150.02332 * 1 2 3 34 34 H 1.07997 * 120.79107 * 359.97438 * 3 2 1 35 35 H 1.08004 * 120.42421 * 179.97438 * 4 3 2 36 36 H 1.08009 * 119.61683 * 179.97438 * 5 4 3 37 37 H 1.09000 * 109.46646 * 29.72211 * 8 7 6 38 38 H 1.09000 * 109.47248 * 149.72928 * 8 7 6 39 39 H 1.08995 * 109.92120 * 242.48137 * 10 9 8 40 40 H 1.09008 * 109.91401 * 3.77212 * 10 9 8 41 41 H 1.08998 * 110.78432 * 141.27753 * 11 10 9 42 42 H 1.08997 * 110.78141 * 264.53741 * 11 10 9 43 43 H 1.08997 * 109.25788 * 63.03447 * 16 14 9 44 44 H 1.09004 * 109.51409 * 303.11624 * 16 14 9 45 45 H 1.09008 * 109.49596 * 293.04583 * 17 16 14 46 46 H 1.08999 * 109.53123 * 172.96290 * 17 16 14 47 47 H 1.09001 * 109.47379 * 29.98044 * 21 20 18 48 48 H 1.09005 * 109.47269 * 149.97671 * 21 20 18 49 49 H 1.09001 * 109.47012 * 300.00389 * 22 21 20 50 50 H 1.09005 * 109.47104 * 59.99690 * 22 21 20 51 51 H 0.97003 * 120.00359 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1957 0.0000 4 6 3.5946 1.1474 0.0005 5 6 4.2256 -0.0824 0.0016 6 7 3.5254 -1.1997 0.0076 7 6 2.2067 -1.1917 0.0016 8 6 1.4538 -2.4972 0.0023 9 7 1.2099 -2.9224 -1.3825 10 6 2.4666 -3.3347 -2.0388 11 6 2.2666 -4.7863 -2.5297 12 6 0.7257 -4.8953 -2.6419 13 1 0.3789 -4.4406 -3.5698 14 6 0.2630 -4.0625 -1.4293 15 1 -0.7646 -3.7202 -1.5524 16 6 0.4447 -4.9154 -0.1490 17 6 -0.4711 -6.1379 -0.2136 18 6 -0.2345 -6.8686 -1.5061 19 8 -0.5472 -8.0380 -1.5819 20 7 0.3063 -6.2778 -2.5723 21 6 0.4905 -7.0969 -3.7728 22 6 1.8696 -7.7579 -3.7326 23 6 2.0593 -8.6000 -4.9679 24 1 1.2745 -8.6582 -5.7075 25 6 3.2348 -9.2961 -5.1539 26 7 4.1904 -9.2256 -4.2531 27 14 3.4697 -10.3404 -6.6848 28 1 4.0790 -9.5150 -7.7584 29 1 4.3640 -11.4838 -6.3716 30 1 2.1528 -10.8527 -7.1414 31 1 -0.3633 0.0005 1.0277 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3634 -0.8902 -0.5135 34 1 1.6891 2.1422 -0.0004 35 1 4.1736 2.0591 0.0001 36 1 5.3047 -0.1287 0.0016 37 1 2.0432 -3.2562 0.5168 38 1 0.5011 -2.3671 0.5156 39 1 2.6748 -2.6815 -2.8862 40 1 3.2891 -3.2943 -1.3246 41 1 2.7367 -4.9340 -3.5019 42 1 2.6556 -5.4978 -1.8015 43 1 0.1878 -4.3141 0.7230 44 1 1.4820 -5.2417 -0.0730 45 1 -1.5114 -5.8162 -0.1627 46 1 -0.2539 -6.8007 0.6240 47 1 -0.2805 -7.8666 -3.8094 48 1 0.4158 -6.4656 -4.6583 49 1 2.6406 -6.9882 -3.6961 50 1 1.9443 -8.3892 -2.8471 51 1 5.0173 -9.7157 -4.3837 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272715338.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:56 Heat of formation + Delta-G solvation = -14.851138 kcal Electronic energy + Delta-G solvation = -30954.212208 eV Core-core repulsion = 27045.177486 eV Total energy + Delta-G solvation = -3909.034722 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.20967 -41.17125 -39.64097 -36.92358 -35.41359 -34.54368 -34.38093 -33.68858 -31.86110 -30.84391 -29.26521 -28.13903 -26.95972 -26.83212 -24.82567 -23.59195 -23.43565 -22.83965 -22.23446 -21.19261 -19.19442 -18.55118 -17.94522 -17.75988 -17.42124 -17.14624 -16.97557 -16.60589 -16.11851 -15.99840 -15.73371 -15.14077 -14.91241 -14.78750 -14.65559 -14.41122 -14.26576 -14.01280 -13.82179 -13.64002 -13.52292 -13.44422 -13.29387 -13.16013 -13.04266 -12.87633 -12.80553 -12.59270 -12.48525 -12.23600 -12.09682 -11.97559 -11.78294 -11.73265 -11.52962 -11.38832 -10.60703 -10.58311 -10.54056 -10.26608 -9.68782 -9.62595 -9.34452 -8.23770 -6.35736 0.23148 0.45133 1.36183 1.39012 1.49898 1.65254 2.05196 2.39218 2.70902 3.09501 3.12006 3.35622 3.45826 3.53392 3.70082 3.80129 3.86597 4.04486 4.08639 4.12514 4.13792 4.23094 4.24470 4.33088 4.38555 4.41167 4.54872 4.59361 4.68712 4.70704 4.77123 4.78750 4.85139 4.86349 4.90730 4.94404 4.94988 4.98633 5.00565 5.10562 5.26759 5.30912 5.33203 5.39032 5.47200 5.48353 5.60602 5.78450 5.82079 5.88405 5.98238 6.17308 6.62284 6.79788 7.16494 7.24043 7.33292 8.88186 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014521 B = 0.002799 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.788214 B =10002.168831 C =11300.676481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.120 4.120 3 C -0.087 4.087 4 C -0.168 4.168 5 C 0.070 3.930 6 N -0.510 5.510 7 C 0.112 3.888 8 C 0.097 3.903 9 N -0.501 5.501 10 C 0.057 3.943 11 C -0.148 4.148 12 C 0.138 3.862 13 H 0.106 0.894 14 C 0.080 3.920 15 H 0.139 0.861 16 C -0.142 4.142 17 C -0.118 4.118 18 C 0.498 3.502 19 O -0.606 6.606 20 N -0.586 5.586 21 C 0.123 3.877 22 C 0.029 3.971 23 C -0.543 4.543 24 H 0.062 0.938 25 C 0.000 4.000 26 N -0.932 5.932 27 Si 0.968 3.032 28 H -0.266 1.266 29 H -0.283 1.283 30 H -0.264 1.264 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.159 0.841 35 H 0.158 0.842 36 H 0.163 0.837 37 H 0.047 0.953 38 H 0.121 0.879 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.045 0.955 43 H 0.117 0.883 44 H 0.048 0.952 45 H 0.133 0.867 46 H 0.100 0.900 47 H 0.055 0.945 48 H 0.082 0.918 49 H 0.009 0.991 50 H -0.032 1.032 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.145 27.224 11.921 30.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.122 4.122 3 C -0.113 4.113 4 C -0.188 4.188 5 C -0.087 4.087 6 N -0.219 5.219 7 C -0.025 4.025 8 C -0.031 4.031 9 N -0.225 5.225 10 C -0.071 4.071 11 C -0.187 4.187 12 C 0.033 3.967 13 H 0.124 0.876 14 C -0.028 4.028 15 H 0.157 0.843 16 C -0.181 4.181 17 C -0.158 4.158 18 C 0.288 3.712 19 O -0.488 6.488 20 N -0.315 5.315 21 C 0.000 4.000 22 C -0.009 4.009 23 C -0.582 4.582 24 H 0.081 0.919 25 C -0.198 4.198 26 N -0.572 5.572 27 Si 0.792 3.208 28 H -0.191 1.191 29 H -0.209 1.209 30 H -0.189 1.189 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.176 0.824 35 H 0.176 0.824 36 H 0.180 0.820 37 H 0.065 0.935 38 H 0.139 0.861 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.064 0.936 43 H 0.135 0.865 44 H 0.067 0.933 45 H 0.151 0.849 46 H 0.119 0.881 47 H 0.073 0.927 48 H 0.101 0.899 49 H 0.027 0.973 50 H -0.014 1.014 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.910 26.244 11.696 29.801 hybrid contribution 1.183 -1.122 -0.438 1.688 sum -6.727 25.122 11.258 28.340 Atomic orbital electron populations 1.20857 0.88369 1.04375 1.03318 1.20993 0.99011 0.92973 0.99240 1.21873 0.94305 0.98938 0.96189 1.22423 0.95828 0.99833 1.00678 1.23023 1.00983 0.88049 0.96616 1.67424 1.08869 1.33029 1.12581 1.21106 0.89351 0.95301 0.96790 1.21250 1.00032 0.91854 0.89924 1.63980 1.09952 1.32932 1.15616 1.22733 0.92250 0.92982 0.99146 1.23171 0.96963 0.97239 1.01353 1.21817 0.93574 0.80129 1.01177 0.87639 1.23289 0.98962 0.88413 0.92123 0.84330 1.22564 0.99194 0.96182 1.00126 1.21590 1.04027 0.97469 0.92707 1.21158 0.76286 0.87054 0.86688 1.90705 1.54282 1.19277 1.84520 1.47086 1.59697 1.11342 1.13367 1.21490 0.98035 0.94158 0.86344 1.19187 0.92599 0.94424 0.94725 1.21567 1.01426 1.28926 1.06246 0.91934 1.25998 0.95608 0.98019 1.00146 1.70120 1.06812 1.43607 1.36705 0.85400 0.78352 0.78097 0.78917 1.19093 1.20899 1.18858 0.89747 0.90354 0.90053 0.82387 0.82435 0.81954 0.93497 0.86087 0.90729 0.92042 0.91977 0.93625 0.86509 0.93318 0.84920 0.88126 0.92679 0.89934 0.97272 1.01365 0.92821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 9.21 71.24 0.66 -0.36 16 2 C -0.12 -1.77 5.90 -19.77 -0.12 -1.88 16 3 C -0.09 -1.09 9.86 22.46 0.22 -0.87 16 4 C -0.17 -2.21 10.11 22.36 0.23 -1.98 16 5 C 0.07 1.26 11.18 84.69 0.95 2.21 16 6 N -0.51 -11.66 9.34 -183.87 -1.72 -13.38 16 7 C 0.11 2.18 5.86 42.54 0.25 2.43 16 8 C 0.10 1.69 2.87 85.56 0.25 1.93 16 9 N -0.50 -9.89 5.11 -860.68 -4.40 -14.29 16 10 C 0.06 1.48 6.36 86.68 0.55 2.03 16 11 C -0.15 -4.76 4.70 31.76 0.15 -4.62 16 12 C 0.14 3.88 3.14 46.39 0.15 4.02 16 13 H 0.11 2.74 8.01 -2.39 -0.02 2.72 16 14 C 0.08 1.55 3.56 45.71 0.16 1.72 16 15 H 0.14 1.92 8.14 -2.38 -0.02 1.90 16 16 C -0.14 -2.76 3.94 31.21 0.12 -2.63 16 17 C -0.12 -2.76 6.09 29.70 0.18 -2.58 16 18 C 0.50 18.57 7.47 87.77 0.66 19.23 16 19 O -0.61 -29.38 16.20 -3.05 -0.05 -29.43 16 20 N -0.59 -21.43 2.51 -798.78 -2.00 -23.44 16 21 C 0.12 5.52 5.06 86.38 0.44 5.96 16 22 C 0.03 1.61 5.07 29.85 0.15 1.76 16 23 C -0.54 -32.45 9.11 25.60 0.23 -32.22 16 24 H 0.06 3.55 7.74 -2.91 -0.02 3.53 16 25 C 0.00 0.01 5.46 84.66 0.46 0.47 16 26 N -0.93 -59.30 13.29 21.45 0.28 -59.02 16 27 Si 0.97 46.08 29.54 68.60 2.03 48.11 16 28 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 29 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 30 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 31 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.08 0.54 8.10 -2.39 -0.02 0.52 16 33 H 0.08 0.79 6.68 -2.39 -0.02 0.77 16 34 H 0.16 1.04 8.06 -2.91 -0.02 1.02 16 35 H 0.16 1.14 8.06 -2.91 -0.02 1.11 16 36 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 37 H 0.05 0.96 6.80 -2.39 -0.02 0.95 16 38 H 0.12 1.37 5.90 -2.39 -0.01 1.35 16 39 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.06 1.75 6.58 -2.38 -0.02 1.74 16 41 H 0.06 2.28 7.37 -2.39 -0.02 2.26 16 42 H 0.04 1.74 7.35 -2.39 -0.02 1.72 16 43 H 0.12 1.42 6.49 -2.39 -0.02 1.41 16 44 H 0.05 1.24 6.58 -2.38 -0.02 1.22 16 45 H 0.13 2.19 8.14 -2.38 -0.02 2.17 16 46 H 0.10 2.36 8.14 -2.39 -0.02 2.35 16 47 H 0.05 2.70 7.14 -2.39 -0.02 2.68 16 48 H 0.08 3.33 7.90 -2.38 -0.02 3.31 16 49 H 0.01 0.52 6.11 -2.39 -0.01 0.51 16 50 H -0.03 -2.11 8.14 -2.38 -0.02 -2.13 16 51 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -82.02 392.33 0.75 -81.27 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 0.92 Total: 15.56 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: 5.68 Total: -5.39 kcal Atomic # 7 Polarization: -102.29 SS G_CDS: -7.83 Total: -110.12 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -0.05 Total: -29.43 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -82.02 0.75 -81.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272715338.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.416 kcal (2) G-P(sol) polarization free energy of solvation -82.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds