Wall clock time and date at job start Wed Apr 1 2020 02:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38678 * 120.78830 * 2 1 4 4 C 1.38176 * 119.15893 * 179.97438 * 3 2 1 5 5 N 1.31884 * 120.76784 * 359.97438 * 4 3 2 6 6 C 1.31860 * 121.72590 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.61682 * 179.97438 * 6 5 4 8 8 N 1.46905 * 109.47012 * 275.00049 * 7 6 5 9 9 C 1.48009 * 111.00057 * 69.87513 * 8 7 6 10 10 C 1.54280 * 107.02658 * 214.40237 * 9 8 7 11 11 C 1.53312 * 104.79885 * 1.99639 * 10 9 8 12 12 C 1.53360 * 111.50295 * 141.00688 * 11 10 9 13 13 C 1.54765 * 101.43714 * 145.73692 * 12 11 10 14 14 N 1.46908 * 105.53589 * 335.70415 * 13 12 11 15 15 C 1.46495 * 124.37812 * 196.77179 * 14 13 12 16 16 C 1.53003 * 109.47331 * 270.02389 * 15 14 13 17 17 C 1.50694 * 109.47234 * 179.97438 * 16 15 14 18 18 H 1.08004 * 120.00047 * 0.02562 * 17 16 15 19 19 C 1.37881 * 120.00048 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99435 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00221 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47108 * 59.99682 * 21 19 17 23 23 H 1.48496 * 109.47309 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.47098 * 300.00206 * 21 19 17 25 25 C 1.34847 * 111.24662 * 16.77238 * 14 13 12 26 26 O 1.21280 * 125.18653 * 178.82250 * 25 14 13 27 27 C 1.48778 * 110.99904 * 312.24523 * 8 7 6 28 28 C 1.38220 * 120.76284 * 0.02562 * 6 5 4 29 29 H 1.08994 * 109.47208 * 90.00234 * 1 2 3 30 30 H 1.08993 * 109.47285 * 210.00906 * 1 2 3 31 31 H 1.09009 * 109.46770 * 330.00292 * 1 2 3 32 32 H 1.07994 * 120.41608 * 359.97438 * 3 2 1 33 33 H 1.07995 * 119.61795 * 180.02562 * 4 3 2 34 34 H 1.08999 * 109.47390 * 34.99846 * 7 6 5 35 35 H 1.08997 * 109.47026 * 155.00202 * 7 6 5 36 36 H 1.09002 * 109.92251 * 333.74580 * 9 8 7 37 37 H 1.09002 * 109.92210 * 94.85286 * 9 8 7 38 38 H 1.08999 * 110.37855 * 120.83053 * 10 9 8 39 39 H 1.09009 * 110.37570 * 243.16710 * 10 9 8 40 40 H 1.08998 * 111.03472 * 263.77749 * 12 11 10 41 41 H 1.09001 * 111.02925 * 27.69853 * 12 11 10 42 42 H 1.08997 * 110.23419 * 216.69176 * 13 12 11 43 43 H 1.09005 * 110.23194 * 94.72032 * 13 12 11 44 44 H 1.08996 * 109.47241 * 30.02706 * 15 14 13 45 45 H 1.09004 * 109.47114 * 150.02569 * 15 14 13 46 46 H 1.08998 * 109.46714 * 300.00225 * 16 15 14 47 47 H 1.08997 * 109.46540 * 59.99833 * 16 15 14 48 48 H 0.97005 * 119.99414 * 180.02562 * 20 19 17 49 49 H 1.08998 * 110.68869 * 276.83872 * 27 8 7 50 50 H 1.09005 * 110.68193 * 40.01634 * 27 8 7 51 51 H 1.07999 * 120.42075 * 180.02562 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1913 0.0000 4 6 3.5981 1.1520 0.0005 5 7 4.2403 0.0001 0.0016 6 6 3.5983 -1.1516 0.0016 7 6 4.3800 -2.4401 0.0022 8 7 4.7377 -2.7964 -1.3774 9 6 5.7512 -1.8642 -1.9202 10 6 5.4506 -1.6959 -3.4240 11 6 4.1942 -2.5395 -3.6691 12 6 3.2358 -1.8495 -4.6476 13 6 2.6366 -3.0634 -5.3977 14 7 3.6326 -4.1357 -5.2698 15 6 3.6629 -5.3402 -6.1031 16 6 2.8222 -6.4365 -5.4456 17 6 2.8529 -7.6753 -6.3031 18 1 3.4160 -7.6804 -7.2247 19 6 2.1620 -8.8024 -5.9112 20 7 1.4767 -8.7962 -4.7887 21 14 2.1993 -10.3377 -6.9744 22 1 3.6009 -10.8074 -7.1165 23 1 1.3825 -11.4014 -6.3368 24 1 1.6438 -10.0247 -8.3156 25 6 4.5154 -3.8680 -4.2863 26 8 5.4295 -4.5913 -3.9517 27 6 3.5585 -2.6904 -2.2783 28 6 2.2166 -1.1909 0.0000 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8898 0.5139 31 1 -0.3633 0.8901 0.5138 32 1 1.6967 2.1377 -0.0004 33 1 4.1583 2.0753 0.0010 34 1 5.2880 -2.3139 0.5919 35 1 3.7721 -3.2337 0.4364 36 1 5.6770 -0.9005 -1.4164 37 1 6.7495 -2.2794 -1.7820 38 1 5.2563 -0.6491 -3.6574 39 1 6.2818 -2.0707 -4.0215 40 1 2.4616 -1.2984 -4.1139 41 1 3.7782 -1.1961 -5.3310 42 1 2.4801 -2.8177 -6.4480 43 1 1.6964 -3.3651 -4.9361 44 1 3.2554 -5.1112 -7.0877 45 1 4.6919 -5.6845 -6.2069 46 1 3.2298 -6.6655 -4.4610 47 1 1.7933 -6.0922 -5.3419 48 1 0.9909 -9.5893 -4.5127 49 1 2.9528 -3.5952 -2.2278 50 1 2.9622 -1.8123 -2.0301 51 1 1.6964 -2.1374 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272783345.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:15 Heat of formation + Delta-G solvation = 9.189756 kcal Electronic energy + Delta-G solvation = -30829.347846 eV Core-core repulsion = 26921.355615 eV Total energy + Delta-G solvation = -3907.992231 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.23524 -40.34643 -37.80190 -35.86994 -34.55642 -33.94648 -32.96166 -31.66026 -30.06038 -29.00741 -28.18389 -27.95812 -26.24882 -24.98771 -23.46711 -23.32294 -21.85710 -21.77427 -20.47864 -20.19522 -18.50512 -16.87068 -16.62674 -16.56230 -16.17878 -15.91759 -15.74071 -15.45236 -15.03446 -14.54735 -14.35179 -14.32251 -13.90036 -13.74195 -13.46319 -13.21895 -13.10578 -12.89889 -12.74130 -12.64522 -12.57960 -12.47315 -12.30878 -11.96786 -11.82643 -11.64746 -11.45951 -11.26116 -11.05177 -10.90902 -10.75827 -10.74696 -10.64775 -9.93542 -9.83856 -9.80594 -9.74101 -9.31843 -9.23647 -8.94892 -8.34871 -8.33582 -7.91893 -5.99008 -4.02238 0.80078 0.95596 3.12735 3.34958 3.39086 3.41476 3.43973 3.63040 3.91193 4.08309 4.29210 4.39412 4.46082 4.48138 4.50680 4.61832 4.75811 4.83852 4.91029 5.02305 5.12570 5.17104 5.19845 5.23260 5.27652 5.37009 5.39020 5.46515 5.53366 5.56849 5.62170 5.70337 5.72693 5.76504 5.80711 5.82028 5.89830 5.99296 6.01311 6.09547 6.12797 6.23291 6.43381 6.51666 6.82604 6.86776 6.97898 7.11054 7.58059 7.71937 7.72690 7.92161 8.01878 8.38113 8.82832 9.04593 9.61418 11.12385 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015012 B = 0.002686 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.724221 B =10422.718281 C =11001.114244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.042 4.042 3 C -0.178 4.178 4 C 0.100 3.900 5 N -0.479 5.479 6 C 0.102 3.898 7 C 0.091 3.909 8 N -0.491 5.491 9 C 0.030 3.970 10 C -0.105 4.105 11 C -0.100 4.100 12 C -0.121 4.121 13 C 0.104 3.896 14 N -0.616 5.616 15 C 0.130 3.870 16 C 0.013 3.987 17 C -0.522 4.522 18 H 0.056 0.944 19 C 0.059 3.941 20 N -0.893 5.893 21 Si 0.894 3.106 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.277 1.277 25 C 0.532 3.468 26 O -0.512 6.512 27 C 0.054 3.946 28 C -0.163 4.163 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.132 0.868 33 H 0.154 0.846 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.063 0.937 45 H 0.069 0.931 46 H 0.021 0.979 47 H 0.016 0.984 48 H 0.261 0.739 49 H 0.088 0.912 50 H 0.060 0.940 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.920 24.805 9.285 26.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.049 4.049 3 C -0.198 4.198 4 C -0.057 4.057 5 N -0.189 5.189 6 C -0.037 4.037 7 C -0.038 4.038 8 N -0.212 5.212 9 C -0.098 4.098 10 C -0.143 4.143 11 C -0.104 4.104 12 C -0.159 4.159 13 C -0.020 4.020 14 N -0.350 5.350 15 C 0.010 3.990 16 C -0.025 4.025 17 C -0.561 4.561 18 H 0.074 0.926 19 C -0.142 4.142 20 N -0.532 5.532 21 Si 0.722 3.278 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.202 1.202 25 C 0.317 3.683 26 O -0.387 6.387 27 C -0.074 4.074 28 C -0.183 4.183 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.150 0.850 33 H 0.171 0.829 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.093 0.907 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.087 0.913 46 H 0.040 0.960 47 H 0.034 0.966 48 H 0.071 0.929 49 H 0.106 0.894 50 H 0.078 0.922 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.592 23.652 9.538 25.509 hybrid contribution -1.535 0.013 -0.565 1.636 sum -0.943 23.665 8.973 25.326 Atomic orbital electron populations 1.20853 0.90134 1.03382 1.03135 1.20367 0.96867 0.92934 0.94780 1.22018 0.95694 0.98591 1.03542 1.22752 0.91788 0.96161 0.94961 1.67589 1.41007 0.97979 1.12341 1.22213 0.91855 0.95065 0.94569 1.21484 0.99691 0.90118 0.92476 1.65200 1.08163 1.47480 1.00365 1.23073 0.96801 0.95996 0.93899 1.22156 0.96657 0.98570 0.96938 1.21393 0.97102 0.95880 0.96052 1.22549 0.98576 0.97088 0.97704 1.22041 0.92521 0.86569 1.00872 1.48659 1.28995 1.21604 1.35781 1.21767 1.01789 0.83128 0.92356 1.19391 0.94586 0.91797 0.96738 1.21062 1.30685 0.97188 1.07178 0.92588 1.24995 0.95309 0.98782 0.95153 1.69969 1.31906 1.29338 1.21942 0.86622 0.78148 0.82600 0.80418 1.20132 1.21274 1.20237 1.19901 0.81918 0.86787 0.79660 1.90699 1.31202 1.53454 1.63299 1.23131 0.93081 1.01848 0.89353 1.21994 0.94914 0.99030 1.02405 0.90290 0.90824 0.91080 0.85026 0.82900 0.88783 0.88703 0.91158 0.90186 0.91120 0.90456 0.89815 0.89989 0.90721 0.91253 0.91836 0.91253 0.96016 0.96605 0.92926 0.89402 0.92244 0.84636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.69 10.06 36.01 0.36 -0.33 16 2 C -0.04 -0.34 5.92 -104.31 -0.62 -0.95 16 3 C -0.18 -1.34 9.82 -39.44 -0.39 -1.73 16 4 C 0.10 0.86 11.18 -17.55 -0.20 0.66 16 5 N -0.48 -5.17 8.50 -9.48 -0.08 -5.25 16 6 C 0.10 1.10 4.60 -82.58 -0.38 0.72 16 7 C 0.09 1.05 5.82 -4.97 -0.03 1.02 16 8 N -0.49 -6.91 5.54 -232.22 -1.29 -8.19 16 9 C 0.03 0.39 6.48 -2.54 -0.02 0.38 16 10 C -0.10 -1.35 5.98 -25.90 -0.15 -1.51 16 11 C -0.10 -1.43 0.73 -155.32 -0.11 -1.54 16 12 C -0.12 -1.36 6.17 -25.62 -0.16 -1.52 16 13 C 0.10 1.44 7.37 -2.89 -0.02 1.41 16 14 N -0.62 -11.56 2.95 -172.55 -0.51 -12.07 16 15 C 0.13 2.82 5.88 -4.04 -0.02 2.80 16 16 C 0.01 0.34 5.30 -27.88 -0.15 0.20 16 17 C -0.52 -15.04 9.11 -34.44 -0.31 -15.36 16 18 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -27.29 13.29 55.43 0.74 -26.55 16 21 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 C 0.53 10.31 6.69 -11.31 -0.08 10.24 16 26 O -0.51 -12.15 17.47 5.56 0.10 -12.05 16 27 C 0.05 0.74 5.09 -2.44 -0.01 0.73 16 28 C -0.16 -1.54 7.59 -39.44 -0.30 -1.84 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 31 H 0.07 0.33 8.10 -51.92 -0.42 -0.10 16 32 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 33 H 0.15 0.93 8.06 -52.49 -0.42 0.50 16 34 H 0.09 1.05 8.08 -51.93 -0.42 0.63 16 35 H 0.09 1.01 8.04 -51.93 -0.42 0.59 16 36 H 0.07 0.86 5.69 -51.93 -0.30 0.57 16 37 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.07 0.76 7.82 -51.93 -0.41 0.35 16 39 H 0.08 1.09 7.82 -51.92 -0.41 0.68 16 40 H 0.08 0.78 7.64 -51.93 -0.40 0.38 16 41 H 0.08 0.80 7.90 -51.93 -0.41 0.39 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.07 1.60 7.96 -51.93 -0.41 1.18 16 46 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 49 H 0.09 1.38 8.01 -51.93 -0.42 0.96 16 50 H 0.06 0.71 4.66 -51.93 -0.24 0.47 16 51 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 404.88 15.07 6.10 6.10 Total: -1.00 -35.34 404.88 -11.08 -46.41 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -8.43 Total: -0.35 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -2.68 Total: -5.00 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: -1.14 Total: -52.06 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.10 Total: -12.05 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.34 -11.08 -46.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272783345.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.602 kcal (2) G-P(sol) polarization free energy of solvation -35.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds