Wall clock time and date at job start Wed Apr 1 2020 02:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38678 * 120.78830 * 2 1 4 4 C 1.38176 * 119.15893 * 179.97438 * 3 2 1 5 5 N 1.31884 * 120.76784 * 359.97438 * 4 3 2 6 6 C 1.31860 * 121.72590 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.61682 * 179.97438 * 6 5 4 8 8 N 1.46905 * 109.47012 * 275.00049 * 7 6 5 9 9 C 1.48009 * 111.00057 * 69.87513 * 8 7 6 10 10 C 1.54280 * 107.02658 * 214.40237 * 9 8 7 11 11 C 1.53312 * 104.79885 * 1.99639 * 10 9 8 12 12 C 1.53360 * 111.50295 * 141.00688 * 11 10 9 13 13 C 1.54765 * 101.43714 * 145.73692 * 12 11 10 14 14 N 1.46908 * 105.53589 * 335.70415 * 13 12 11 15 15 C 1.46495 * 124.37812 * 196.77179 * 14 13 12 16 16 C 1.53003 * 109.47331 * 270.02389 * 15 14 13 17 17 C 1.50694 * 109.47234 * 179.97438 * 16 15 14 18 18 H 1.08004 * 120.00047 * 0.02562 * 17 16 15 19 19 C 1.37881 * 120.00048 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99435 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00221 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47108 * 59.99682 * 21 19 17 23 23 H 1.48496 * 109.47309 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.47098 * 300.00206 * 21 19 17 25 25 C 1.34847 * 111.24662 * 16.77238 * 14 13 12 26 26 O 1.21280 * 125.18653 * 178.82250 * 25 14 13 27 27 C 1.48778 * 110.99904 * 312.24523 * 8 7 6 28 28 C 1.38220 * 120.76284 * 0.02562 * 6 5 4 29 29 H 1.08994 * 109.47208 * 90.00234 * 1 2 3 30 30 H 1.08993 * 109.47285 * 210.00906 * 1 2 3 31 31 H 1.09009 * 109.46770 * 330.00292 * 1 2 3 32 32 H 1.07994 * 120.41608 * 359.97438 * 3 2 1 33 33 H 1.07995 * 119.61795 * 180.02562 * 4 3 2 34 34 H 1.08999 * 109.47390 * 34.99846 * 7 6 5 35 35 H 1.08997 * 109.47026 * 155.00202 * 7 6 5 36 36 H 1.09002 * 109.92251 * 333.74580 * 9 8 7 37 37 H 1.09002 * 109.92210 * 94.85286 * 9 8 7 38 38 H 1.08999 * 110.37855 * 120.83053 * 10 9 8 39 39 H 1.09009 * 110.37570 * 243.16710 * 10 9 8 40 40 H 1.08998 * 111.03472 * 263.77749 * 12 11 10 41 41 H 1.09001 * 111.02925 * 27.69853 * 12 11 10 42 42 H 1.08997 * 110.23419 * 216.69176 * 13 12 11 43 43 H 1.09005 * 110.23194 * 94.72032 * 13 12 11 44 44 H 1.08996 * 109.47241 * 30.02706 * 15 14 13 45 45 H 1.09004 * 109.47114 * 150.02569 * 15 14 13 46 46 H 1.08998 * 109.46714 * 300.00225 * 16 15 14 47 47 H 1.08997 * 109.46540 * 59.99833 * 16 15 14 48 48 H 0.97005 * 119.99414 * 180.02562 * 20 19 17 49 49 H 1.08998 * 110.68869 * 276.83872 * 27 8 7 50 50 H 1.09005 * 110.68193 * 40.01634 * 27 8 7 51 51 H 1.07999 * 120.42075 * 180.02562 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1913 0.0000 4 6 3.5981 1.1520 0.0005 5 7 4.2403 0.0001 0.0016 6 6 3.5983 -1.1516 0.0016 7 6 4.3800 -2.4401 0.0022 8 7 4.7377 -2.7964 -1.3774 9 6 5.7512 -1.8642 -1.9202 10 6 5.4506 -1.6959 -3.4240 11 6 4.1942 -2.5395 -3.6691 12 6 3.2358 -1.8495 -4.6476 13 6 2.6366 -3.0634 -5.3977 14 7 3.6326 -4.1357 -5.2698 15 6 3.6629 -5.3402 -6.1031 16 6 2.8222 -6.4365 -5.4456 17 6 2.8529 -7.6753 -6.3031 18 1 3.4160 -7.6804 -7.2247 19 6 2.1620 -8.8024 -5.9112 20 7 1.4767 -8.7962 -4.7887 21 14 2.1993 -10.3377 -6.9744 22 1 3.6009 -10.8074 -7.1165 23 1 1.3825 -11.4014 -6.3368 24 1 1.6438 -10.0247 -8.3156 25 6 4.5154 -3.8680 -4.2863 26 8 5.4295 -4.5913 -3.9517 27 6 3.5585 -2.6904 -2.2783 28 6 2.2166 -1.1909 0.0000 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8898 0.5139 31 1 -0.3633 0.8901 0.5138 32 1 1.6967 2.1377 -0.0004 33 1 4.1583 2.0753 0.0010 34 1 5.2880 -2.3139 0.5919 35 1 3.7721 -3.2337 0.4364 36 1 5.6770 -0.9005 -1.4164 37 1 6.7495 -2.2794 -1.7820 38 1 5.2563 -0.6491 -3.6574 39 1 6.2818 -2.0707 -4.0215 40 1 2.4616 -1.2984 -4.1139 41 1 3.7782 -1.1961 -5.3310 42 1 2.4801 -2.8177 -6.4480 43 1 1.6964 -3.3651 -4.9361 44 1 3.2554 -5.1112 -7.0877 45 1 4.6919 -5.6845 -6.2069 46 1 3.2298 -6.6655 -4.4610 47 1 1.7933 -6.0922 -5.3419 48 1 0.9909 -9.5893 -4.5127 49 1 2.9528 -3.5952 -2.2278 50 1 2.9622 -1.8123 -2.0301 51 1 1.6964 -2.1374 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272783345.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:14 Heat of formation + Delta-G solvation = -14.314755 kcal Electronic energy + Delta-G solvation = -30830.367078 eV Core-core repulsion = 26921.355615 eV Total energy + Delta-G solvation = -3909.011463 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.30866 -41.27479 -38.96419 -37.42271 -35.94025 -34.98171 -34.40554 -32.97102 -31.30274 -30.34563 -29.25543 -28.65459 -27.33690 -26.82254 -24.52323 -24.10097 -23.57283 -22.71433 -21.65861 -21.33761 -19.91692 -18.67732 -17.62247 -17.43276 -17.25381 -17.06843 -16.81360 -16.69985 -16.50736 -16.12518 -15.56192 -15.21097 -14.98625 -14.72964 -14.64799 -14.47186 -14.29290 -14.12148 -13.92066 -13.72235 -13.54013 -13.48334 -13.33539 -13.23164 -13.14971 -12.83831 -12.71264 -12.61725 -12.55477 -12.30960 -12.11618 -12.01058 -11.93038 -11.77380 -11.64931 -11.42424 -10.62630 -10.57124 -10.52085 -10.34439 -9.93344 -9.53254 -9.33177 -8.23817 -6.36971 0.13979 0.32317 1.38100 1.42781 1.50180 1.63002 2.15771 2.41534 2.72779 3.00786 3.09348 3.25691 3.36254 3.39403 3.56382 3.68202 3.87348 3.88783 4.04887 4.14190 4.20321 4.22457 4.28624 4.33660 4.41088 4.43698 4.51569 4.60767 4.64773 4.66384 4.69283 4.70014 4.77723 4.82188 4.83123 4.87102 4.90333 4.94203 4.96765 5.05715 5.09740 5.17989 5.24400 5.33823 5.42357 5.46150 5.60787 5.79736 5.82590 5.85111 5.99919 6.15547 6.32622 6.78220 7.05581 7.29404 7.33227 8.88229 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015012 B = 0.002686 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.724221 B =10422.718281 C =11001.114244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.044 4.044 3 C -0.170 4.170 4 C 0.093 3.907 5 N -0.501 5.501 6 C 0.089 3.911 7 C 0.093 3.907 8 N -0.521 5.521 9 C 0.035 3.965 10 C -0.099 4.099 11 C -0.096 4.096 12 C -0.103 4.103 13 C 0.094 3.906 14 N -0.623 5.623 15 C 0.143 3.857 16 C 0.026 3.974 17 C -0.547 4.547 18 H 0.066 0.934 19 C 0.000 4.000 20 N -0.932 5.932 21 Si 0.971 3.029 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.258 1.258 25 C 0.517 3.483 26 O -0.570 6.570 27 C 0.064 3.936 28 C -0.175 4.175 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.162 0.838 33 H 0.178 0.822 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.105 0.895 39 H 0.060 0.940 40 H 0.114 0.886 41 H 0.109 0.891 42 H 0.102 0.898 43 H 0.066 0.934 44 H 0.092 0.908 45 H 0.049 0.951 46 H -0.031 1.031 47 H 0.000 1.000 48 H 0.264 0.736 49 H 0.057 0.943 50 H 0.084 0.916 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.392 27.798 8.010 29.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.052 4.052 3 C -0.190 4.190 4 C -0.064 4.064 5 N -0.212 5.212 6 C -0.049 4.049 7 C -0.035 4.035 8 N -0.244 5.244 9 C -0.093 4.093 10 C -0.137 4.137 11 C -0.100 4.100 12 C -0.141 4.141 13 C -0.028 4.028 14 N -0.356 5.356 15 C 0.022 3.978 16 C -0.012 4.012 17 C -0.585 4.585 18 H 0.085 0.915 19 C -0.198 4.198 20 N -0.572 5.572 21 Si 0.794 3.206 22 H -0.196 1.196 23 H -0.207 1.207 24 H -0.183 1.183 25 C 0.305 3.695 26 O -0.449 6.449 27 C -0.064 4.064 28 C -0.195 4.195 29 H 0.105 0.895 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.179 0.821 33 H 0.195 0.805 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.101 0.899 37 H 0.082 0.918 38 H 0.123 0.877 39 H 0.079 0.921 40 H 0.132 0.868 41 H 0.127 0.873 42 H 0.120 0.880 43 H 0.085 0.915 44 H 0.110 0.890 45 H 0.068 0.932 46 H -0.012 1.012 47 H 0.018 0.982 48 H 0.073 0.927 49 H 0.076 0.924 50 H 0.102 0.898 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.907 26.689 8.251 27.950 hybrid contribution -1.103 -0.901 -0.069 1.426 sum -2.010 25.788 8.182 27.130 Atomic orbital electron populations 1.20905 0.88500 1.04172 1.03808 1.20670 0.98081 0.92573 0.93869 1.22351 0.95374 0.99532 1.01751 1.23229 0.92705 0.96177 0.94286 1.67532 1.41846 0.98552 1.13239 1.21920 0.92154 0.94579 0.96250 1.21386 0.99837 0.91204 0.91089 1.65108 1.08752 1.48858 1.01641 1.23006 0.95793 0.96123 0.94353 1.22176 0.95290 0.99959 0.96301 1.21388 0.98762 0.93245 0.96601 1.22623 0.98451 0.96049 0.96953 1.22401 0.91211 0.86002 1.03141 1.48783 1.30074 1.21606 1.35132 1.21343 0.99625 0.83336 0.93534 1.19181 0.94079 0.93495 0.94416 1.21526 1.30920 0.98235 1.07835 0.91541 1.26034 0.94604 1.02610 0.96532 1.70119 1.32690 1.30535 1.23842 0.85422 0.78388 0.77785 0.78979 1.19593 1.20736 1.18268 1.20903 0.80975 0.88309 0.79315 1.90649 1.33665 1.55716 1.64888 1.23010 0.92922 1.01351 0.89121 1.22051 0.94558 0.99850 1.03081 0.89547 0.91004 0.89403 0.82075 0.80521 0.89102 0.88930 0.89937 0.91823 0.87679 0.92113 0.86754 0.87306 0.87988 0.91528 0.89005 0.93201 1.01212 0.98181 0.92690 0.92443 0.89788 0.84847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 10.06 71.24 0.72 -0.32 16 2 C -0.04 -0.60 5.92 -19.67 -0.12 -0.72 16 3 C -0.17 -1.95 9.82 22.36 0.22 -1.73 16 4 C 0.09 1.32 11.18 84.67 0.95 2.26 16 5 N -0.50 -10.03 8.50 -183.89 -1.56 -11.60 16 6 C 0.09 1.87 4.60 42.55 0.20 2.06 16 7 C 0.09 2.26 5.82 85.56 0.50 2.75 16 8 N -0.52 -15.33 5.54 -888.62 -4.92 -20.25 16 9 C 0.03 0.92 6.48 86.52 0.56 1.48 16 10 C -0.10 -2.45 5.98 31.13 0.19 -2.27 16 11 C -0.10 -2.68 0.73 -52.71 -0.04 -2.72 16 12 C -0.10 -1.98 6.17 31.32 0.19 -1.79 16 13 C 0.09 2.44 7.37 86.90 0.64 3.08 16 14 N -0.62 -23.74 2.95 -818.18 -2.41 -26.16 16 15 C 0.14 6.42 5.88 86.38 0.51 6.93 16 16 C 0.03 1.48 5.30 29.85 0.16 1.64 16 17 C -0.55 -32.26 9.11 25.60 0.23 -32.03 16 18 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 19 C 0.00 0.02 5.46 84.66 0.46 0.48 16 20 N -0.93 -58.70 13.29 21.45 0.28 -58.41 16 21 Si 0.97 45.33 29.54 68.60 2.03 47.36 16 22 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 23 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 24 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 25 C 0.52 20.84 6.69 87.42 0.58 21.42 16 26 O -0.57 -29.02 17.47 -3.03 -0.05 -29.07 16 27 C 0.06 1.77 5.09 86.16 0.44 2.21 16 28 C -0.17 -3.14 7.59 22.36 0.17 -2.97 16 29 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.07 0.67 8.10 -2.39 -0.02 0.65 16 31 H 0.09 0.49 8.10 -2.38 -0.02 0.47 16 32 H 0.16 0.86 8.06 -2.91 -0.02 0.84 16 33 H 0.18 1.52 8.06 -2.91 -0.02 1.50 16 34 H 0.09 2.16 8.08 -2.39 -0.02 2.14 16 35 H 0.09 2.16 8.04 -2.39 -0.02 2.14 16 36 H 0.08 1.97 5.69 -2.39 -0.01 1.95 16 37 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.10 1.89 7.82 -2.39 -0.02 1.87 16 39 H 0.06 1.72 7.82 -2.38 -0.02 1.70 16 40 H 0.11 1.58 7.64 -2.39 -0.02 1.57 16 41 H 0.11 1.59 7.90 -2.39 -0.02 1.57 16 42 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 44 H 0.09 3.57 8.14 -2.39 -0.02 3.55 16 45 H 0.05 2.40 7.96 -2.38 -0.02 2.39 16 46 H -0.03 -2.01 8.14 -2.39 -0.02 -2.03 16 47 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 48 H 0.26 15.59 8.31 -92.70 -0.77 14.82 16 49 H 0.06 1.92 8.01 -2.39 -0.02 1.90 16 50 H 0.08 1.90 4.66 -2.38 -0.01 1.89 16 51 H 0.13 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -82.32 404.88 0.83 -81.49 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 0.91 Total: 16.85 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: 6.56 Total: -0.21 kcal Atomic # 7 Polarization: -107.80 SS G_CDS: -8.61 Total: -116.41 kcal Atomic # 8 Polarization: -29.02 SS G_CDS: -0.05 Total: -29.07 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -82.32 0.83 -81.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272783345.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.178 kcal (2) G-P(sol) polarization free energy of solvation -82.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds