Wall clock time and date at job start Wed Apr 1 2020 03:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38671 * 120.78718 * 2 1 4 4 C 1.38180 * 119.16093 * 179.97438 * 3 2 1 5 5 N 1.31891 * 120.76782 * 0.02562 * 4 3 2 6 6 C 1.31861 * 121.72178 * 359.97438 * 5 4 3 7 7 C 1.38220 * 120.76588 * 359.73182 * 6 5 4 8 8 C 1.50695 * 120.42362 * 180.26609 * 7 6 5 9 9 N 1.46898 * 109.47572 * 260.27752 * 8 7 6 10 10 C 1.48056 * 110.99991 * 52.97395 * 9 8 7 11 11 C 1.54256 * 106.83381 * 146.61581 * 10 9 8 12 12 C 1.54366 * 104.82635 * 358.54373 * 11 10 9 13 13 H 1.09003 * 110.88555 * 95.06254 * 12 11 10 14 14 C 1.48926 * 111.00339 * 169.99990 * 9 8 7 15 15 H 1.08995 * 112.07554 * 78.73346 * 14 9 8 16 16 C 1.53116 * 107.98122 * 315.04078 * 14 9 8 17 17 C 1.52924 * 109.18372 * 184.13157 * 16 14 9 18 18 C 1.50305 * 109.42081 * 52.13013 * 17 16 14 19 19 O 1.21284 * 118.67819 * 159.16285 * 18 17 16 20 20 N 1.33329 * 122.64483 * 339.18579 * 18 17 16 21 21 C 1.46499 * 117.36166 * 180.23948 * 20 18 17 22 22 C 1.53004 * 109.46753 * 90.00037 * 21 20 18 23 23 C 1.50706 * 109.46965 * 179.97438 * 22 21 20 24 24 H 1.07999 * 119.99409 * 359.97438 * 23 22 21 25 25 C 1.37870 * 120.00093 * 179.97438 * 23 22 21 26 26 N 1.31514 * 120.00298 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 120.00014 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.46934 * 90.00206 * 27 25 23 29 29 H 1.48499 * 109.47482 * 210.00145 * 27 25 23 30 30 H 1.48506 * 109.47173 * 330.00241 * 27 25 23 31 31 H 1.09002 * 109.47152 * 90.00212 * 1 2 3 32 32 H 1.09001 * 109.46980 * 330.00313 * 1 2 3 33 33 H 1.09004 * 109.47113 * 210.00294 * 1 2 3 34 34 H 1.07996 * 120.41996 * 359.97438 * 3 2 1 35 35 H 1.08001 * 119.62114 * 179.97438 * 4 3 2 36 36 H 1.07996 * 119.61320 * 179.97438 * 6 5 4 37 37 H 1.09003 * 109.46853 * 20.27961 * 8 7 6 38 38 H 1.08997 * 109.47264 * 140.27157 * 8 7 6 39 39 H 1.09005 * 109.98451 * 265.95753 * 10 9 8 40 40 H 1.08995 * 109.98816 * 27.27139 * 10 9 8 41 41 H 1.09006 * 110.36630 * 239.71461 * 11 10 9 42 42 H 1.08999 * 110.46473 * 117.42682 * 11 10 9 43 43 H 1.08999 * 109.51842 * 304.04584 * 16 14 9 44 44 H 1.08990 * 109.51861 * 64.16275 * 16 14 9 45 45 H 1.09003 * 109.47313 * 172.11232 * 17 16 14 46 46 H 1.08998 * 109.48088 * 292.14191 * 17 16 14 47 47 H 1.08994 * 109.46923 * 209.99656 * 21 20 18 48 48 H 1.08995 * 109.47285 * 329.99863 * 21 20 18 49 49 H 1.08994 * 109.47095 * 299.99514 * 22 21 20 50 50 H 1.08995 * 109.47367 * 59.99877 * 22 21 20 51 51 H 0.96996 * 120.00182 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1521 0.0005 5 7 4.2403 0.0001 0.0005 6 6 3.5983 -1.1516 0.0005 7 6 2.2167 -1.1909 0.0061 8 6 1.4909 -2.5116 0.0121 9 7 1.0446 -2.8313 -1.3505 10 6 2.1717 -2.7616 -2.3080 11 6 1.9109 -3.8357 -3.3840 12 6 0.6005 -4.5239 -2.9456 13 1 -0.2587 -4.0796 -3.4481 14 6 0.5384 -4.2296 -1.4320 15 1 -0.4737 -4.3224 -1.0384 16 6 1.5254 -5.1337 -0.6885 17 6 1.0866 -6.5905 -0.8426 18 6 0.8810 -6.8991 -2.2992 19 8 0.9089 -8.0572 -2.6584 20 7 0.6695 -5.9509 -3.2124 21 6 0.4782 -6.3825 -4.5992 22 6 -1.0096 -6.6312 -4.8552 23 6 -1.2066 -7.0746 -6.2821 24 1 -0.3557 -7.1690 -6.9404 25 6 -2.4729 -7.3596 -6.7468 26 7 -3.5091 -7.2441 -5.9452 27 14 -2.7171 -7.9084 -8.5156 28 1 -2.6254 -9.3887 -8.5917 29 1 -4.0544 -7.4702 -8.9898 30 1 -1.6654 -7.3027 -9.3715 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 0.8900 0.5138 33 1 -0.3633 -0.8900 0.5139 34 1 1.6967 2.1377 -0.0004 35 1 4.1583 2.0754 0.0001 36 1 4.1586 -2.0749 0.0001 37 1 2.1621 -3.2934 0.3675 38 1 0.6258 -2.4478 0.6722 39 1 2.2087 -1.7742 -2.7685 40 1 3.1103 -2.9690 -1.7943 41 1 2.7285 -4.5563 -3.4067 42 1 1.7870 -3.3724 -4.3628 43 1 2.5230 -5.0074 -1.1091 44 1 1.5392 -4.8665 0.3681 45 1 1.8567 -7.2468 -0.4372 46 1 0.1531 -6.7481 -0.3023 47 1 0.8381 -5.6061 -5.2742 48 1 1.0357 -7.3026 -4.7736 49 1 -1.3696 -7.4076 -4.1802 50 1 -1.5672 -5.7110 -4.6808 51 1 -4.4000 -7.4443 -6.2723 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272815671.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:09 Heat of formation + Delta-G solvation = 9.193452 kcal Electronic energy + Delta-G solvation = -30817.084879 eV Core-core repulsion = 26909.092809 eV Total energy + Delta-G solvation = -3907.992070 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.28197 -40.40564 -38.51174 -35.57083 -34.51395 -33.60322 -32.90350 -32.39883 -30.54601 -29.16480 -28.40413 -27.82302 -25.93976 -25.14442 -23.82990 -22.98907 -22.23896 -21.67348 -21.04280 -19.86915 -18.04043 -17.04682 -16.91683 -16.69984 -16.46653 -16.12522 -15.97970 -15.29676 -15.01135 -14.85789 -14.49844 -14.17448 -14.10614 -13.92818 -13.52699 -13.38220 -13.10421 -13.03321 -12.89904 -12.76016 -12.53404 -12.42352 -12.23577 -11.92589 -11.84487 -11.51756 -11.48617 -11.41731 -11.18162 -11.00502 -10.90508 -10.72413 -10.62475 -9.85101 -9.84095 -9.71563 -9.69476 -9.34497 -9.32329 -9.02074 -8.60042 -8.33563 -8.04909 -5.99134 -4.01721 0.78095 0.98300 3.08714 3.26213 3.33842 3.39694 3.42562 3.51701 3.89628 4.10121 4.29689 4.31700 4.43720 4.47960 4.51504 4.54435 4.68109 4.70413 4.78523 4.98048 5.02219 5.07985 5.15553 5.17841 5.21261 5.25838 5.31576 5.37115 5.39838 5.44885 5.51399 5.62978 5.65938 5.71846 5.75298 5.77149 5.85512 5.90616 6.03789 6.09876 6.12299 6.20765 6.40819 6.54029 6.57714 6.67890 6.87794 6.92501 7.64784 7.68470 7.75941 8.01556 8.06304 8.38895 8.67332 9.04823 9.61904 11.12422 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016344 B = 0.002559 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.764292 B =10938.405105 C =11671.516551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.017 4.017 3 C -0.178 4.178 4 C 0.098 3.902 5 N -0.491 5.491 6 C 0.108 3.892 7 C -0.136 4.136 8 C 0.081 3.919 9 N -0.499 5.499 10 C 0.041 3.959 11 C -0.144 4.144 12 C 0.152 3.848 13 H 0.102 0.898 14 C 0.058 3.942 15 H 0.110 0.890 16 C -0.150 4.150 17 C -0.131 4.131 18 C 0.510 3.490 19 O -0.547 6.547 20 N -0.591 5.591 21 C 0.109 3.891 22 C 0.016 3.984 23 C -0.519 4.519 24 H 0.056 0.944 25 C 0.058 3.942 26 N -0.894 5.894 27 Si 0.893 3.107 28 H -0.280 1.280 29 H -0.287 1.287 30 H -0.274 1.274 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.133 0.867 35 H 0.153 0.847 36 H 0.149 0.851 37 H 0.058 0.942 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.046 0.954 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.079 0.921 45 H 0.096 0.904 46 H 0.097 0.903 47 H 0.061 0.939 48 H 0.075 0.925 49 H 0.021 0.979 50 H 0.015 0.985 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.689 17.368 16.589 26.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.026 4.026 3 C -0.198 4.198 4 C -0.059 4.059 5 N -0.200 5.200 6 C -0.050 4.050 7 C -0.138 4.138 8 C -0.047 4.047 9 N -0.222 5.222 10 C -0.087 4.087 11 C -0.183 4.183 12 C 0.046 3.954 13 H 0.120 0.880 14 C -0.050 4.050 15 H 0.128 0.872 16 C -0.189 4.189 17 C -0.172 4.172 18 C 0.298 3.702 19 O -0.425 6.425 20 N -0.322 5.322 21 C -0.012 4.012 22 C -0.022 4.022 23 C -0.557 4.557 24 H 0.074 0.926 25 C -0.143 4.143 26 N -0.533 5.533 27 Si 0.721 3.279 28 H -0.206 1.206 29 H -0.212 1.212 30 H -0.198 1.198 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.151 0.849 35 H 0.170 0.830 36 H 0.167 0.833 37 H 0.076 0.924 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.064 0.936 41 H 0.092 0.908 42 H 0.098 0.902 43 H 0.089 0.911 44 H 0.097 0.903 45 H 0.114 0.886 46 H 0.116 0.884 47 H 0.080 0.920 48 H 0.093 0.907 49 H 0.039 0.961 50 H 0.033 0.967 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.032 17.152 16.301 26.546 hybrid contribution -0.515 -0.686 -0.737 1.132 sum 11.517 16.465 15.564 25.416 Atomic orbital electron populations 1.20840 0.89799 1.02828 1.03660 1.20236 0.97095 0.92097 0.93141 1.22061 0.95589 0.98741 1.03363 1.22730 0.91846 0.96199 0.95093 1.67694 1.41144 0.98441 1.12685 1.22659 0.91023 0.96224 0.95067 1.20644 0.94713 0.95531 1.02956 1.21270 0.99122 0.92605 0.91706 1.65150 1.29679 1.22621 1.04799 1.22879 0.92632 0.99704 0.93451 1.22906 0.98200 0.97704 0.99470 1.21473 0.98421 0.81112 0.94378 0.88023 1.23120 0.99535 0.86953 0.95425 0.87249 1.22233 1.00095 0.95029 1.01528 1.21573 1.04177 0.97046 0.94387 1.19931 0.77008 0.85343 0.87933 1.90741 1.51458 1.19450 1.80866 1.47333 1.69559 1.05113 1.10188 1.21922 1.01352 0.99627 0.78326 1.19332 0.88804 0.97122 0.96936 1.21092 0.92836 1.45523 0.96288 0.92603 1.24988 0.96096 0.95538 0.97665 1.69969 0.98782 1.49104 1.35447 0.86575 0.77384 0.79020 0.84902 1.20619 1.21243 1.19850 0.89635 0.91676 0.90634 0.84891 0.82966 0.83325 0.92383 0.89109 0.90397 0.93562 0.90808 0.90158 0.91064 0.90275 0.88582 0.88448 0.92018 0.90657 0.96068 0.96709 0.93009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 9.68 36.01 0.35 -0.42 16 2 C -0.02 -0.14 5.92 -104.31 -0.62 -0.76 16 3 C -0.18 -1.32 9.82 -39.44 -0.39 -1.71 16 4 C 0.10 0.81 11.18 -17.55 -0.20 0.61 16 5 N -0.49 -4.97 10.36 -13.25 -0.14 -5.11 16 6 C 0.11 0.97 9.74 -17.55 -0.17 0.80 16 7 C -0.14 -1.12 4.49 -104.48 -0.47 -1.59 16 8 C 0.08 0.61 4.06 -4.98 -0.02 0.59 16 9 N -0.50 -4.60 5.38 -223.76 -1.20 -5.80 16 10 C 0.04 0.40 4.83 -2.53 -0.01 0.39 16 11 C -0.14 -1.65 5.74 -25.36 -0.15 -1.80 16 12 C 0.15 2.06 3.23 -67.15 -0.22 1.84 16 13 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 14 C 0.06 0.61 3.43 -65.83 -0.23 0.39 16 15 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 16 C -0.15 -1.41 4.02 -26.71 -0.11 -1.52 16 17 C -0.13 -1.60 6.07 -28.11 -0.17 -1.77 16 18 C 0.51 9.12 7.47 -11.82 -0.09 9.03 16 19 O -0.55 -12.48 16.19 5.55 0.09 -12.39 16 20 N -0.59 -10.25 2.42 -165.93 -0.40 -10.65 16 21 C 0.11 2.31 5.02 -4.04 -0.02 2.29 16 22 C 0.02 0.42 5.28 -27.88 -0.15 0.27 16 23 C -0.52 -14.85 9.11 -34.44 -0.31 -15.17 16 24 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 25 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 26 N -0.89 -27.21 13.29 55.43 0.74 -26.47 16 27 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 28 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 29 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 30 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.35 8.10 -51.93 -0.42 -0.07 16 33 H 0.07 0.49 6.26 -51.93 -0.33 0.16 16 34 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 35 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.15 1.12 7.80 -52.49 -0.41 0.71 16 37 H 0.06 0.40 5.45 -51.93 -0.28 0.12 16 38 H 0.09 0.63 6.53 -51.93 -0.34 0.29 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.05 0.41 6.32 -51.93 -0.33 0.09 16 41 H 0.07 0.89 7.98 -51.93 -0.41 0.47 16 42 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.07 0.69 6.65 -51.93 -0.35 0.34 16 44 H 0.08 0.57 6.32 -51.93 -0.33 0.25 16 45 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 46 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.06 1.20 7.79 -51.93 -0.40 0.80 16 48 H 0.08 1.74 7.14 -51.93 -0.37 1.37 16 49 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 51 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 394.84 15.07 5.95 5.95 Total: -1.00 -34.40 394.84 -11.21 -45.61 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -8.16 Total: -1.14 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -3.06 Total: -6.92 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: -1.01 Total: -48.03 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.09 Total: -12.39 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.40 -11.21 -45.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272815671.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.800 kcal (2) G-P(sol) polarization free energy of solvation -34.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds