Wall clock time and date at job start Wed Apr 1 2020 03:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38671 * 120.78718 * 2 1 4 4 C 1.38180 * 119.16093 * 179.97438 * 3 2 1 5 5 N 1.31891 * 120.76782 * 0.02562 * 4 3 2 6 6 C 1.31861 * 121.72178 * 359.97438 * 5 4 3 7 7 C 1.38220 * 120.76588 * 359.73182 * 6 5 4 8 8 C 1.50695 * 120.42362 * 180.26609 * 7 6 5 9 9 N 1.46898 * 109.47572 * 260.27752 * 8 7 6 10 10 C 1.48056 * 110.99991 * 52.97395 * 9 8 7 11 11 C 1.54256 * 106.83381 * 146.61581 * 10 9 8 12 12 C 1.54366 * 104.82635 * 358.54373 * 11 10 9 13 13 H 1.09003 * 110.88555 * 95.06254 * 12 11 10 14 14 C 1.48926 * 111.00339 * 169.99990 * 9 8 7 15 15 H 1.08995 * 112.07554 * 78.73346 * 14 9 8 16 16 C 1.53116 * 107.98122 * 315.04078 * 14 9 8 17 17 C 1.52924 * 109.18372 * 184.13157 * 16 14 9 18 18 C 1.50305 * 109.42081 * 52.13013 * 17 16 14 19 19 O 1.21284 * 118.67819 * 159.16285 * 18 17 16 20 20 N 1.33329 * 122.64483 * 339.18579 * 18 17 16 21 21 C 1.46499 * 117.36166 * 180.23948 * 20 18 17 22 22 C 1.53004 * 109.46753 * 90.00037 * 21 20 18 23 23 C 1.50706 * 109.46965 * 179.97438 * 22 21 20 24 24 H 1.07999 * 119.99409 * 359.97438 * 23 22 21 25 25 C 1.37870 * 120.00093 * 179.97438 * 23 22 21 26 26 N 1.31514 * 120.00298 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 120.00014 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.46934 * 90.00206 * 27 25 23 29 29 H 1.48499 * 109.47482 * 210.00145 * 27 25 23 30 30 H 1.48506 * 109.47173 * 330.00241 * 27 25 23 31 31 H 1.09002 * 109.47152 * 90.00212 * 1 2 3 32 32 H 1.09001 * 109.46980 * 330.00313 * 1 2 3 33 33 H 1.09004 * 109.47113 * 210.00294 * 1 2 3 34 34 H 1.07996 * 120.41996 * 359.97438 * 3 2 1 35 35 H 1.08001 * 119.62114 * 179.97438 * 4 3 2 36 36 H 1.07996 * 119.61320 * 179.97438 * 6 5 4 37 37 H 1.09003 * 109.46853 * 20.27961 * 8 7 6 38 38 H 1.08997 * 109.47264 * 140.27157 * 8 7 6 39 39 H 1.09005 * 109.98451 * 265.95753 * 10 9 8 40 40 H 1.08995 * 109.98816 * 27.27139 * 10 9 8 41 41 H 1.09006 * 110.36630 * 239.71461 * 11 10 9 42 42 H 1.08999 * 110.46473 * 117.42682 * 11 10 9 43 43 H 1.08999 * 109.51842 * 304.04584 * 16 14 9 44 44 H 1.08990 * 109.51861 * 64.16275 * 16 14 9 45 45 H 1.09003 * 109.47313 * 172.11232 * 17 16 14 46 46 H 1.08998 * 109.48088 * 292.14191 * 17 16 14 47 47 H 1.08994 * 109.46923 * 209.99656 * 21 20 18 48 48 H 1.08995 * 109.47285 * 329.99863 * 21 20 18 49 49 H 1.08994 * 109.47095 * 299.99514 * 22 21 20 50 50 H 1.08995 * 109.47367 * 59.99877 * 22 21 20 51 51 H 0.96996 * 120.00182 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1521 0.0005 5 7 4.2403 0.0001 0.0005 6 6 3.5983 -1.1516 0.0005 7 6 2.2167 -1.1909 0.0061 8 6 1.4909 -2.5116 0.0121 9 7 1.0446 -2.8313 -1.3505 10 6 2.1717 -2.7616 -2.3080 11 6 1.9109 -3.8357 -3.3840 12 6 0.6005 -4.5239 -2.9456 13 1 -0.2587 -4.0796 -3.4481 14 6 0.5384 -4.2296 -1.4320 15 1 -0.4737 -4.3224 -1.0384 16 6 1.5254 -5.1337 -0.6885 17 6 1.0866 -6.5905 -0.8426 18 6 0.8810 -6.8991 -2.2992 19 8 0.9089 -8.0572 -2.6584 20 7 0.6695 -5.9509 -3.2124 21 6 0.4782 -6.3825 -4.5992 22 6 -1.0096 -6.6312 -4.8552 23 6 -1.2066 -7.0746 -6.2821 24 1 -0.3557 -7.1690 -6.9404 25 6 -2.4729 -7.3596 -6.7468 26 7 -3.5091 -7.2441 -5.9452 27 14 -2.7171 -7.9084 -8.5156 28 1 -2.6254 -9.3887 -8.5917 29 1 -4.0544 -7.4702 -8.9898 30 1 -1.6654 -7.3027 -9.3715 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 0.8900 0.5138 33 1 -0.3633 -0.8900 0.5139 34 1 1.6967 2.1377 -0.0004 35 1 4.1583 2.0754 0.0001 36 1 4.1586 -2.0749 0.0001 37 1 2.1621 -3.2934 0.3675 38 1 0.6258 -2.4478 0.6722 39 1 2.2087 -1.7742 -2.7685 40 1 3.1103 -2.9690 -1.7943 41 1 2.7285 -4.5563 -3.4067 42 1 1.7870 -3.3724 -4.3628 43 1 2.5230 -5.0074 -1.1091 44 1 1.5392 -4.8665 0.3681 45 1 1.8567 -7.2468 -0.4372 46 1 0.1531 -6.7481 -0.3023 47 1 0.8381 -5.6061 -5.2742 48 1 1.0357 -7.3026 -4.7736 49 1 -1.3696 -7.4076 -4.1802 50 1 -1.5672 -5.7110 -4.6808 51 1 -4.4000 -7.4443 -6.2723 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272815671.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:08 Heat of formation + Delta-G solvation = -13.339258 kcal Electronic energy + Delta-G solvation = -30818.061971 eV Core-core repulsion = 26909.092809 eV Total energy + Delta-G solvation = -3908.969162 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.25985 -41.19451 -39.67622 -36.94337 -35.62673 -34.83331 -34.29990 -33.33072 -31.78861 -30.61518 -29.22232 -28.57136 -26.95664 -26.65045 -25.05807 -23.64461 -23.33931 -22.81954 -22.36670 -20.77286 -19.24993 -18.63526 -17.96537 -17.60284 -17.50272 -17.19999 -16.95849 -16.61081 -16.15070 -16.09830 -15.81502 -15.15251 -14.92607 -14.87497 -14.62384 -14.48066 -14.23311 -14.16478 -13.85487 -13.62538 -13.54314 -13.45929 -13.42610 -13.06566 -12.94135 -12.82531 -12.75060 -12.56649 -12.49360 -12.23636 -12.07933 -11.90741 -11.87701 -11.73404 -11.67103 -11.40038 -10.60101 -10.57012 -10.32317 -10.28140 -9.92658 -9.61431 -9.31527 -8.23622 -6.35755 0.20018 0.39598 1.37746 1.40381 1.50932 1.67823 2.04130 2.40097 2.78407 3.09698 3.10604 3.38760 3.45899 3.61615 3.66094 3.80135 3.85047 3.93393 4.01020 4.08268 4.11391 4.14315 4.22005 4.35633 4.42890 4.43737 4.55687 4.62864 4.66161 4.68824 4.75774 4.76991 4.81149 4.85500 4.89597 4.90779 4.92296 4.98728 5.02047 5.06836 5.15139 5.24537 5.29810 5.34671 5.47391 5.55099 5.57864 5.74386 5.80852 5.88095 6.00217 6.16884 6.62590 6.79279 7.09549 7.24787 7.33522 8.88637 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016344 B = 0.002559 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.764292 B =10938.405105 C =11671.516551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.027 4.027 3 C -0.179 4.179 4 C 0.087 3.913 5 N -0.520 5.520 6 C 0.097 3.903 7 C -0.139 4.139 8 C 0.083 3.917 9 N -0.500 5.500 10 C 0.052 3.948 11 C -0.137 4.137 12 C 0.140 3.860 13 H 0.080 0.920 14 C 0.066 3.934 15 H 0.111 0.889 16 C -0.140 4.140 17 C -0.120 4.120 18 C 0.498 3.502 19 O -0.607 6.607 20 N -0.588 5.588 21 C 0.125 3.875 22 C 0.030 3.970 23 C -0.544 4.544 24 H 0.062 0.938 25 C 0.001 3.999 26 N -0.932 5.932 27 Si 0.968 3.032 28 H -0.276 1.276 29 H -0.278 1.278 30 H -0.259 1.259 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.154 0.846 35 H 0.171 0.829 36 H 0.160 0.840 37 H 0.073 0.927 38 H 0.103 0.897 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.116 0.884 45 H 0.111 0.889 46 H 0.111 0.889 47 H 0.079 0.921 48 H 0.053 0.947 49 H -0.025 1.025 50 H -0.002 1.002 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.533 18.972 17.543 28.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.036 4.036 3 C -0.198 4.198 4 C -0.069 4.069 5 N -0.229 5.229 6 C -0.060 4.060 7 C -0.142 4.142 8 C -0.045 4.045 9 N -0.223 5.223 10 C -0.076 4.076 11 C -0.176 4.176 12 C 0.036 3.964 13 H 0.098 0.902 14 C -0.042 4.042 15 H 0.129 0.871 16 C -0.178 4.178 17 C -0.160 4.160 18 C 0.288 3.712 19 O -0.489 6.489 20 N -0.317 5.317 21 C 0.002 3.998 22 C -0.008 4.008 23 C -0.582 4.582 24 H 0.080 0.920 25 C -0.197 4.197 26 N -0.572 5.572 27 Si 0.792 3.208 28 H -0.202 1.202 29 H -0.203 1.203 30 H -0.183 1.183 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.172 0.828 35 H 0.188 0.812 36 H 0.177 0.823 37 H 0.091 0.909 38 H 0.121 0.879 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.134 0.866 45 H 0.130 0.870 46 H 0.129 0.871 47 H 0.098 0.902 48 H 0.072 0.928 49 H -0.007 1.007 50 H 0.016 0.984 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.893 18.810 17.280 28.612 hybrid contribution -0.810 -1.128 -1.019 1.723 sum 12.083 17.682 16.261 26.890 Atomic orbital electron populations 1.20830 0.88981 1.03697 1.03281 1.20503 0.97802 0.92356 0.92928 1.22318 0.95432 0.99584 1.02505 1.23115 0.92553 0.96479 0.94784 1.67692 1.42140 0.99293 1.13767 1.22875 0.91491 0.96421 0.95208 1.20687 0.94516 0.95899 1.03070 1.21338 0.99876 0.92689 0.90564 1.65146 1.29777 1.21396 1.05953 1.22768 0.93339 0.98546 0.92938 1.22820 0.96659 0.97962 1.00143 1.21673 0.98885 0.78613 0.97208 0.90170 1.23014 1.00304 0.88106 0.92812 0.87078 1.22229 0.99537 0.92460 1.03573 1.21581 1.05490 0.99399 0.89544 1.21101 0.75443 0.84364 0.90254 1.90706 1.54092 1.21917 1.82212 1.47356 1.68889 1.06963 1.08537 1.21419 0.97417 0.99421 0.81498 1.19109 0.91868 0.94499 0.95304 1.21539 0.93433 1.45861 0.97380 0.91968 1.25991 0.95686 0.95317 1.02713 1.70105 0.99381 1.49874 1.37813 0.85403 0.77909 0.78527 0.78941 1.20193 1.20326 1.18286 0.90516 0.90348 0.90332 0.82839 0.81162 0.82325 0.90925 0.87919 0.90767 0.92201 0.91058 0.90578 0.90699 0.86593 0.87040 0.87116 0.90232 0.92819 1.00653 0.98375 0.92689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 9.68 71.24 0.69 -0.54 16 2 C -0.03 -0.38 5.92 -19.66 -0.12 -0.49 16 3 C -0.18 -2.26 9.82 22.36 0.22 -2.04 16 4 C 0.09 1.28 11.18 84.67 0.95 2.22 16 5 N -0.52 -9.70 10.36 -195.84 -2.03 -11.73 16 6 C 0.10 1.54 9.74 84.68 0.83 2.36 16 7 C -0.14 -1.95 4.49 -19.78 -0.09 -2.04 16 8 C 0.08 0.97 4.06 85.56 0.35 1.32 16 9 N -0.50 -8.00 5.38 -861.84 -4.64 -12.64 16 10 C 0.05 0.90 4.83 86.51 0.42 1.32 16 11 C -0.14 -3.03 5.74 31.48 0.18 -2.85 16 12 C 0.14 3.81 3.23 46.12 0.15 3.96 16 13 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 14 C 0.07 1.27 3.43 45.01 0.15 1.42 16 15 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 16 C -0.14 -2.19 4.02 30.61 0.12 -2.06 16 17 C -0.12 -2.71 6.07 29.70 0.18 -2.53 16 18 C 0.50 18.15 7.47 87.76 0.66 18.80 16 19 O -0.61 -28.99 16.19 -3.04 -0.05 -29.04 16 20 N -0.59 -20.98 2.42 -798.08 -1.93 -22.91 16 21 C 0.13 5.57 5.02 86.38 0.43 6.00 16 22 C 0.03 1.68 5.28 29.85 0.16 1.84 16 23 C -0.54 -32.11 9.11 25.60 0.23 -31.88 16 24 H 0.06 3.50 7.74 -2.91 -0.02 3.48 16 25 C 0.00 0.06 5.46 84.65 0.46 0.52 16 26 N -0.93 -58.27 13.29 21.44 0.28 -57.99 16 27 Si 0.97 45.40 29.54 68.60 2.03 47.42 16 28 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 29 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 30 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 31 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.08 0.64 8.10 -2.39 -0.02 0.62 16 33 H 0.08 0.81 6.26 -2.38 -0.01 0.80 16 34 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 35 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 36 H 0.16 2.00 7.80 -2.91 -0.02 1.98 16 37 H 0.07 0.67 5.45 -2.39 -0.01 0.66 16 38 H 0.10 1.02 6.53 -2.39 -0.02 1.01 16 39 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 40 H 0.06 0.90 6.32 -2.39 -0.02 0.88 16 41 H 0.07 1.64 7.98 -2.38 -0.02 1.62 16 42 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.07 1.18 6.65 -2.39 -0.02 1.17 16 44 H 0.12 1.09 6.32 -2.39 -0.02 1.07 16 45 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 46 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 47 H 0.08 3.20 7.79 -2.39 -0.02 3.18 16 48 H 0.05 2.61 7.14 -2.39 -0.02 2.59 16 49 H -0.02 -1.60 8.14 -2.39 -0.02 -1.62 16 50 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 51 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -78.79 394.84 0.55 -78.24 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: 0.92 Total: 13.33 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: 5.97 Total: -4.68 kcal Atomic # 7 Polarization: -96.96 SS G_CDS: -8.31 Total: -105.27 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -0.05 Total: -29.04 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Total: -78.79 0.55 -78.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272815671.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.900 kcal (2) G-P(sol) polarization free energy of solvation -78.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds