Wall clock time and date at job start Wed Apr 1 2020 02:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38665 * 120.79216 * 2 1 4 4 C 1.38184 * 119.16683 * 180.02562 * 3 2 1 5 5 N 1.31886 * 120.75988 * 359.97438 * 4 3 2 6 6 C 1.31854 * 121.73093 * 359.77009 * 5 4 3 7 7 C 1.38231 * 120.75683 * 0.49676 * 6 5 4 8 8 C 1.50701 * 120.41462 * 179.77433 * 7 6 5 9 9 N 1.46900 * 109.46947 * 259.71566 * 8 7 6 10 10 C 1.48654 * 110.99648 * 69.88005 * 9 8 7 11 11 C 1.54643 * 104.73522 * 158.56615 * 10 9 8 12 12 C 1.53253 * 104.67306 * 336.25008 * 11 10 9 13 13 C 1.53604 * 111.07345 * 239.53413 * 12 11 10 14 14 C 1.54710 * 101.51233 * 262.67932 * 13 12 11 15 15 N 1.46884 * 105.52046 * 335.48529 * 14 13 12 16 16 C 1.46499 * 124.36979 * 196.85974 * 15 14 13 17 17 C 1.53003 * 109.47129 * 269.98638 * 16 15 14 18 18 C 1.50701 * 109.47199 * 180.02562 * 17 16 15 19 19 H 1.07993 * 119.99824 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99910 * 179.97438 * 18 17 16 21 21 N 1.31510 * 119.99773 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 120.00001 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46772 * 89.99854 * 22 20 18 24 24 H 1.48497 * 109.47192 * 210.00346 * 22 20 18 25 25 H 1.48500 * 109.47201 * 330.00362 * 22 20 18 26 26 C 1.34746 * 111.25232 * 16.82330 * 15 14 13 27 27 O 1.21284 * 125.13089 * 178.94547 * 26 15 14 28 28 C 1.49095 * 111.13134 * 185.39554 * 9 8 7 29 29 H 1.09003 * 109.46825 * 269.97937 * 1 2 3 30 30 H 1.09000 * 109.46708 * 29.97155 * 1 2 3 31 31 H 1.08999 * 109.47133 * 149.97449 * 1 2 3 32 32 H 1.08009 * 120.42090 * 0.02562 * 3 2 1 33 33 H 1.07996 * 119.62007 * 180.02562 * 4 3 2 34 34 H 1.07994 * 119.62513 * 180.24852 * 6 5 4 35 35 H 1.09011 * 109.47088 * 139.72026 * 8 7 6 36 36 H 1.08994 * 109.47646 * 19.72336 * 8 7 6 37 37 H 1.09002 * 110.40713 * 39.71877 * 10 9 8 38 38 H 1.08998 * 110.40266 * 277.41350 * 10 9 8 39 39 H 1.09005 * 110.39243 * 95.05074 * 11 10 9 40 40 H 1.08994 * 110.39502 * 217.44697 * 11 10 9 41 41 H 1.08998 * 111.02118 * 20.73768 * 13 12 11 42 42 H 1.09002 * 111.01379 * 144.62105 * 13 12 11 43 43 H 1.09004 * 110.23711 * 216.47399 * 14 13 12 44 44 H 1.08993 * 110.23677 * 94.50084 * 14 13 12 45 45 H 1.08999 * 109.47239 * 29.98614 * 16 15 14 46 46 H 1.09000 * 109.47285 * 149.98666 * 16 15 14 47 47 H 1.09003 * 109.46577 * 299.99934 * 17 16 15 48 48 H 1.09000 * 109.47014 * 59.99862 * 17 16 15 49 49 H 0.97000 * 119.99708 * 180.02562 * 21 20 18 50 50 H 1.09000 * 110.43756 * 83.12635 * 28 9 8 51 51 H 1.09007 * 110.54547 * 320.64238 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1912 0.0000 4 6 3.5982 1.1520 -0.0005 5 7 4.2403 0.0000 -0.0005 6 6 3.5983 -1.1517 0.0045 7 6 2.2166 -1.1909 -0.0004 8 6 1.4908 -2.5116 0.0003 9 7 1.0431 -2.8250 -1.3633 10 6 2.1978 -3.1489 -2.2417 11 6 1.5893 -3.9638 -3.4067 12 6 0.2971 -4.5554 -2.8332 13 6 0.3194 -6.0902 -2.8903 14 6 -0.4773 -6.3626 -4.1882 15 7 -1.3324 -5.1836 -4.3792 16 6 -2.4987 -5.1426 -5.2647 17 6 -2.0632 -4.6939 -6.6612 18 6 -3.2631 -4.6511 -7.5720 19 1 -4.2387 -4.9169 -7.1927 20 6 -3.1155 -4.2716 -8.8893 21 7 -4.1625 -4.2347 -9.6842 22 14 -1.4283 -3.8098 -9.5447 23 1 -0.7556 -5.0218 -10.0775 24 1 -1.5763 -2.8079 -10.6308 25 1 -0.6116 -3.2327 -8.4469 26 6 -0.9059 -4.1451 -3.6341 27 8 -1.4159 -3.0449 -3.6135 28 6 0.2084 -4.0602 -1.3844 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8903 -0.5134 31 1 -0.3633 -0.8897 -0.5142 32 1 1.6968 2.1378 0.0004 33 1 4.1584 2.0753 -0.0001 34 1 4.1584 -2.0751 0.0084 35 1 0.6263 -2.4508 0.6616 36 1 2.1622 -3.2951 0.3514 37 1 2.9304 -3.7480 -1.7009 38 1 2.6580 -2.2349 -2.6170 39 1 1.3664 -3.3112 -4.2509 40 1 2.2697 -4.7595 -3.7098 41 1 1.3402 -6.4636 -2.9726 42 1 -0.1841 -6.5209 -2.0248 43 1 -1.0891 -7.2576 -4.0743 44 1 0.2034 -6.4753 -5.0319 45 1 -2.9445 -6.1354 -5.3247 46 1 -3.2309 -4.4389 -4.8689 47 1 -1.6175 -3.7010 -6.6011 48 1 -1.3310 -5.3977 -7.0570 49 1 -4.0585 -3.9681 -10.6110 50 1 -0.8240 -3.8264 -1.1242 51 1 0.6129 -4.8070 -0.7011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272815894.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:19 Heat of formation + Delta-G solvation = 8.014436 kcal Electronic energy + Delta-G solvation = -30395.364001 eV Core-core repulsion = 26487.320804 eV Total energy + Delta-G solvation = -3908.043196 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.11668 -40.46369 -38.06293 -36.07318 -34.86077 -33.84454 -32.84605 -31.74785 -30.34624 -29.46554 -28.39286 -27.86831 -26.14941 -25.17878 -23.39003 -22.83044 -22.31079 -21.67608 -20.84025 -20.19215 -18.70593 -17.02226 -16.97512 -16.62358 -16.37887 -16.10579 -15.59352 -15.50551 -15.13202 -14.64082 -14.41148 -14.18359 -14.16216 -13.77419 -13.51338 -13.42769 -13.01943 -12.93161 -12.88774 -12.80521 -12.63664 -12.42864 -12.34853 -12.22670 -12.00769 -11.95392 -11.59129 -11.46861 -11.38694 -11.07443 -10.99652 -10.75497 -10.46473 -10.02035 -9.87719 -9.66003 -9.60121 -9.35244 -9.27196 -9.14653 -8.66002 -8.56203 -8.15267 -6.07088 -4.05922 0.85589 1.06289 2.93388 3.29007 3.37583 3.41618 3.43644 3.46071 3.83561 4.16372 4.23489 4.28697 4.36569 4.44026 4.51622 4.53954 4.64833 4.75572 4.76180 4.93372 5.00282 5.08315 5.15083 5.21663 5.27309 5.30794 5.34096 5.36173 5.38194 5.46021 5.53186 5.56759 5.59661 5.62897 5.71146 5.75267 5.81949 5.90597 5.97824 6.00036 6.02752 6.21430 6.30538 6.48009 6.56145 6.59394 6.73942 6.84763 7.16464 7.35433 7.63608 7.74607 7.75324 8.46907 8.62662 8.96018 9.55082 11.06025 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014019 B = 0.002618 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.821908 B =10691.188953 C =11425.545408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.013 4.013 3 C -0.177 4.177 4 C 0.097 3.903 5 N -0.492 5.492 6 C 0.106 3.894 7 C -0.132 4.132 8 C 0.088 3.912 9 N -0.496 5.496 10 C 0.038 3.962 11 C -0.102 4.102 12 C -0.100 4.100 13 C -0.123 4.123 14 C 0.102 3.898 15 N -0.618 5.618 16 C 0.138 3.862 17 C -0.024 4.024 18 C -0.521 4.521 19 H 0.074 0.926 20 C 0.070 3.930 21 N -0.901 5.901 22 Si 0.879 3.121 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.266 1.266 26 C 0.527 3.473 27 O -0.513 6.513 28 C 0.060 3.940 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.133 0.867 33 H 0.153 0.847 34 H 0.149 0.851 35 H 0.087 0.913 36 H 0.047 0.953 37 H 0.046 0.954 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.020 0.980 48 H 0.011 0.989 49 H 0.264 0.736 50 H 0.088 0.912 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.848 0.627 23.742 28.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.022 4.022 3 C -0.197 4.197 4 C -0.059 4.059 5 N -0.201 5.201 6 C -0.052 4.052 7 C -0.134 4.134 8 C -0.040 4.040 9 N -0.219 5.219 10 C -0.090 4.090 11 C -0.140 4.140 12 C -0.104 4.104 13 C -0.161 4.161 14 C -0.022 4.022 15 N -0.352 5.352 16 C 0.018 3.982 17 C -0.062 4.062 18 C -0.559 4.559 19 H 0.092 0.908 20 C -0.132 4.132 21 N -0.539 5.539 22 Si 0.706 3.294 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.191 1.191 26 C 0.312 3.688 27 O -0.388 6.388 28 C -0.068 4.068 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.111 0.889 32 H 0.151 0.849 33 H 0.170 0.830 34 H 0.166 0.834 35 H 0.106 0.894 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.107 0.893 42 H 0.101 0.899 43 H 0.096 0.904 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.094 0.906 47 H 0.038 0.962 48 H 0.030 0.970 49 H 0.074 0.926 50 H 0.106 0.894 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 16.034 1.731 23.327 28.359 hybrid contribution 0.403 -0.445 -0.378 0.709 sum 16.437 1.286 22.949 28.258 Atomic orbital electron populations 1.20937 0.89875 1.04948 1.02354 1.20236 0.97119 0.92093 0.92740 1.22085 0.95593 0.98809 1.03203 1.22713 0.91836 0.96173 0.95219 1.67666 1.41150 0.98456 1.12836 1.22607 0.90978 0.96193 0.95401 1.20592 0.94656 0.95417 1.02746 1.21083 0.98735 0.92841 0.91389 1.65575 1.15767 1.32783 1.07789 1.23168 0.92560 0.99349 0.93935 1.22173 0.93824 0.99506 0.98490 1.21415 0.96363 0.96258 0.96398 1.22702 1.01600 0.93452 0.98319 1.22062 0.93684 0.89357 0.97077 1.48683 1.29836 1.12423 1.44230 1.21566 0.84839 1.01638 0.90172 1.19890 0.97715 0.96533 0.92098 1.20963 0.94462 1.46185 0.94326 0.90811 1.24972 0.96606 0.94734 0.96854 1.69903 1.29475 1.48360 1.06210 0.86780 0.85127 0.78627 0.78816 1.20306 1.21242 1.19053 1.20088 0.84153 0.84347 0.80169 1.90725 1.60590 1.21399 1.66104 1.22921 0.99579 0.90511 0.93767 0.91015 0.91117 0.88919 0.84871 0.82964 0.83373 0.89434 0.93458 0.93559 0.90127 0.90304 0.90168 0.89305 0.89948 0.90411 0.91258 0.91092 0.90586 0.96156 0.97023 0.92648 0.89406 0.92778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 9.36 36.01 0.34 -0.81 16 2 C -0.01 -0.13 5.92 -104.32 -0.62 -0.75 16 3 C -0.18 -1.62 9.82 -39.44 -0.39 -2.00 16 4 C 0.10 0.92 11.18 -17.55 -0.20 0.73 16 5 N -0.49 -5.45 10.36 -13.25 -0.14 -5.58 16 6 C 0.11 1.04 10.65 -17.54 -0.19 0.85 16 7 C -0.13 -1.27 4.95 -104.48 -0.52 -1.79 16 8 C 0.09 0.75 4.12 -4.98 -0.02 0.73 16 9 N -0.50 -5.32 4.81 -231.33 -1.11 -6.43 16 10 C 0.04 0.38 5.85 -1.99 -0.01 0.37 16 11 C -0.10 -1.15 6.32 -25.74 -0.16 -1.31 16 12 C -0.10 -1.19 0.83 -155.26 -0.13 -1.32 16 13 C -0.12 -1.09 6.11 -25.52 -0.16 -1.25 16 14 C 0.10 1.21 7.37 -2.93 -0.02 1.19 16 15 N -0.62 -10.39 2.94 -172.52 -0.51 -10.90 16 16 C 0.14 2.79 5.88 -4.04 -0.02 2.76 16 17 C -0.02 -0.59 4.37 -27.88 -0.12 -0.71 16 18 C -0.52 -14.96 9.66 -34.44 -0.33 -15.29 16 19 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 20 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 21 N -0.90 -27.95 13.96 55.43 0.77 -27.18 16 22 Si 0.88 22.25 27.47 -169.99 -4.67 17.58 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.27 -6.67 6.54 56.52 0.37 -6.30 16 26 C 0.53 9.10 6.49 -11.23 -0.07 9.03 16 27 O -0.51 -11.14 17.47 5.55 0.10 -11.04 16 28 C 0.06 0.62 5.47 -2.41 -0.01 0.61 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 31 H 0.09 1.02 6.54 -51.93 -0.34 0.68 16 32 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 33 H 0.15 1.05 8.06 -52.49 -0.42 0.62 16 34 H 0.15 1.15 8.04 -52.49 -0.42 0.73 16 35 H 0.09 0.69 7.38 -51.92 -0.38 0.31 16 36 H 0.05 0.33 7.75 -51.93 -0.40 -0.07 16 37 H 0.05 0.37 7.81 -51.93 -0.41 -0.04 16 38 H 0.08 0.91 8.13 -51.93 -0.42 0.49 16 39 H 0.08 1.13 7.76 -51.93 -0.40 0.73 16 40 H 0.08 0.72 7.32 -51.93 -0.38 0.34 16 41 H 0.09 0.59 7.43 -51.93 -0.39 0.20 16 42 H 0.08 0.61 7.89 -51.93 -0.41 0.20 16 43 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 46 H 0.08 1.65 7.95 -51.93 -0.41 1.24 16 47 H 0.02 0.53 7.20 -51.93 -0.37 0.16 16 48 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 49 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 50 H 0.09 1.03 7.84 -51.93 -0.41 0.63 16 51 H 0.05 0.42 7.70 -51.92 -0.40 0.02 16 LS Contribution 404.99 15.07 6.10 6.10 Total: -1.00 -35.49 404.99 -10.67 -46.16 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -8.48 Total: -1.71 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -2.73 Total: -7.00 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: -0.98 Total: -50.09 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.10 Total: -11.04 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.67 Total: 17.58 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.49 -10.67 -46.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272815894.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.172 kcal (2) G-P(sol) polarization free energy of solvation -35.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds