Wall clock time and date at job start Wed Apr 1 2020 02:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38224 * 120.42053 * 2 1 4 4 N 1.31855 * 120.76704 * 179.97438 * 3 2 1 5 5 C 1.31892 * 121.72057 * 0.02562 * 4 3 2 6 6 C 1.38176 * 120.76979 * 359.97438 * 5 4 3 7 7 C 1.50695 * 120.42244 * 180.02562 * 6 5 4 8 8 N 1.46901 * 109.47490 * 89.99504 * 7 6 5 9 9 C 1.48700 * 111.04246 * 52.57031 * 8 7 6 10 10 C 1.55156 * 103.38444 * 159.10397 * 9 8 7 11 11 C 1.53610 * 102.66251 * 323.43800 * 10 9 8 12 12 C 1.53608 * 110.86289 * 142.29989 * 11 10 9 13 13 C 1.54704 * 101.51725 * 144.57358 * 12 11 10 14 14 N 1.46877 * 105.52202 * 335.47850 * 13 12 11 15 15 C 1.46497 * 124.37214 * 196.84858 * 14 13 12 16 16 C 1.53006 * 109.46954 * 269.99269 * 15 14 13 17 17 C 1.50698 * 109.46936 * 180.02562 * 16 15 14 18 18 H 1.08004 * 120.00048 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99712 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99599 * 179.97438 * 19 17 16 21 21 Si 1.86793 * 120.00097 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47446 * 90.00197 * 21 19 17 23 23 H 1.48507 * 109.47108 * 210.00269 * 21 19 17 24 24 H 1.48499 * 109.47090 * 329.99657 * 21 19 17 25 25 C 1.34757 * 111.25263 * 16.82299 * 14 13 12 26 26 O 1.21282 * 125.12778 * 179.00407 * 25 14 13 27 27 C 1.48185 * 111.00044 * 170.00273 * 8 7 6 28 28 C 1.38630 * 120.41885 * 180.21899 * 2 1 3 29 29 H 1.08993 * 109.47417 * 89.99647 * 1 2 3 30 30 H 1.09008 * 109.47025 * 209.99948 * 1 2 3 31 31 H 1.09002 * 109.47015 * 329.99280 * 1 2 3 32 32 H 1.08001 * 119.61685 * 0.02562 * 3 2 1 33 33 H 1.08000 * 119.61325 * 180.02562 * 5 4 3 34 34 H 1.09008 * 109.47046 * 329.99646 * 7 6 5 35 35 H 1.09003 * 109.47060 * 210.00231 * 7 6 5 36 36 H 1.09002 * 110.60589 * 40.63555 * 9 8 7 37 37 H 1.08999 * 110.65115 * 277.59402 * 9 8 7 38 38 H 1.08998 * 110.77533 * 205.14341 * 10 9 8 39 39 H 1.09001 * 110.76825 * 81.72670 * 10 9 8 40 40 H 1.09002 * 111.01471 * 262.63320 * 12 11 10 41 41 H 1.08995 * 111.01846 * 26.51381 * 12 11 10 42 42 H 1.08994 * 110.24049 * 216.45843 * 13 12 11 43 43 H 1.09011 * 110.30763 * 94.52623 * 13 12 11 44 44 H 1.08995 * 109.47417 * 29.99523 * 15 14 13 45 45 H 1.09007 * 109.46958 * 149.99890 * 15 14 13 46 46 H 1.08995 * 109.47267 * 300.00346 * 16 15 14 47 47 H 1.08998 * 109.46842 * 60.00480 * 16 15 14 48 48 H 0.96998 * 119.99904 * 179.97438 * 20 19 17 49 49 H 1.09002 * 110.02047 * 95.04502 * 27 8 7 50 50 H 1.08997 * 110.01692 * 333.69549 * 27 8 7 51 51 H 1.07998 * 120.79075 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.1999 0.0005 5 6 4.2256 0.0822 0.0005 6 6 3.5948 -1.1471 0.0005 7 6 4.4026 -2.4193 0.0012 8 7 4.6647 -2.8324 1.3863 9 6 3.4032 -2.9018 2.1705 10 6 3.7682 -3.8338 3.3561 11 6 4.7065 -4.8591 2.7019 12 6 5.8476 -5.2430 3.6559 13 6 6.0450 -6.7391 3.3151 14 7 4.7595 -7.1901 2.7660 15 6 4.3633 -8.5943 2.6345 16 6 4.8033 -9.1224 1.2675 17 6 4.3952 -10.5667 1.1320 18 1 3.8738 -11.0587 1.9398 19 6 4.6875 -11.2601 -0.0234 20 7 4.3318 -12.5208 -0.1415 21 14 5.5886 -10.4091 -1.4208 22 1 7.0529 -10.5807 -1.2428 23 1 5.1737 -11.0080 -2.7148 24 1 5.2556 -8.9619 -1.4159 25 6 3.9914 -6.1453 2.3995 26 8 2.8890 -6.2305 1.9010 27 6 5.2454 -4.1949 1.4333 28 6 2.2089 -1.1955 -0.0046 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8901 0.5139 31 1 -0.3633 0.8899 0.5140 32 1 1.6675 2.1276 0.0004 33 1 5.3047 0.1285 0.0014 34 1 5.3489 -2.2490 -0.5124 35 1 3.8463 -3.2032 -0.5128 36 1 2.6028 -3.3369 1.5719 37 1 3.1202 -1.9132 2.5319 38 1 2.8779 -4.3223 3.7522 39 1 4.2866 -3.2793 4.1383 40 1 6.7489 -4.6701 3.4378 41 1 5.5473 -5.1154 4.6959 42 1 6.2886 -7.3021 4.2160 43 1 6.8343 -6.8570 2.5725 44 1 4.8383 -9.1810 3.4207 45 1 3.2800 -8.6761 2.7241 46 1 4.3283 -8.5357 0.4813 47 1 5.8865 -9.0406 1.1779 48 1 4.5370 -13.0085 -0.9544 49 1 6.3329 -4.1358 1.4762 50 1 4.9371 -4.7623 0.5552 51 1 1.6888 -2.1419 -0.0086 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272840607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:56 Heat of formation + Delta-G solvation = 4.511414 kcal Electronic energy + Delta-G solvation = -30231.933347 eV Core-core repulsion = 26323.738248 eV Total energy + Delta-G solvation = -3908.195099 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.20464 -40.50694 -38.08722 -36.18940 -34.65683 -33.88253 -33.25743 -31.94699 -30.55908 -29.41444 -28.06485 -27.62859 -26.37255 -25.25279 -23.56395 -23.08252 -22.27947 -21.64755 -20.66574 -20.29167 -18.73223 -17.20945 -17.05526 -16.91982 -16.54670 -16.11467 -15.60641 -15.24758 -14.87603 -14.68275 -14.35214 -14.26847 -14.19644 -13.71919 -13.59903 -13.41332 -13.24070 -13.08747 -12.99159 -12.85765 -12.78471 -12.68887 -12.42417 -12.25728 -12.21081 -11.69133 -11.58857 -11.53755 -11.42316 -11.07258 -10.95473 -10.87473 -10.50927 -10.06927 -9.93150 -9.90701 -9.68981 -9.43788 -9.25871 -9.12921 -8.65330 -8.60228 -8.23629 -6.10916 -4.10057 0.80085 0.99337 2.79345 3.25359 3.32218 3.33807 3.38521 3.45224 3.87665 4.10074 4.20376 4.30374 4.35969 4.39810 4.45437 4.48750 4.67778 4.72200 4.75742 4.84246 4.95466 5.07146 5.12104 5.19231 5.22613 5.23203 5.30722 5.38125 5.39907 5.46843 5.52043 5.57629 5.64640 5.66066 5.68081 5.76202 5.78538 5.85265 5.92139 5.93821 5.97080 6.00842 6.24944 6.42432 6.53269 6.54928 6.70320 6.76301 7.10256 7.28109 7.55378 7.70236 7.70986 8.41993 8.49391 8.91960 9.50876 11.02160 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013761 B = 0.002576 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.226745 B =10865.229570 C =11600.664569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.138 4.138 3 C 0.094 3.906 4 N -0.483 5.483 5 C 0.111 3.889 6 C -0.125 4.125 7 C 0.085 3.915 8 N -0.506 5.506 9 C 0.037 3.963 10 C -0.098 4.098 11 C -0.107 4.107 12 C -0.118 4.118 13 C 0.098 3.902 14 N -0.613 5.613 15 C 0.136 3.864 16 C -0.023 4.023 17 C -0.522 4.522 18 H 0.074 0.926 19 C 0.070 3.930 20 N -0.900 5.900 21 Si 0.880 3.120 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.267 1.267 25 C 0.523 3.477 26 O -0.528 6.528 27 C 0.060 3.940 28 C -0.070 4.070 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.153 0.847 33 H 0.156 0.844 34 H 0.090 0.910 35 H 0.051 0.949 36 H 0.053 0.947 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.076 0.924 46 H 0.019 0.981 47 H 0.012 0.988 48 H 0.264 0.736 49 H 0.092 0.908 50 H 0.053 0.947 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.329 26.680 5.194 27.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.139 4.139 3 C -0.063 4.063 4 N -0.191 5.191 5 C -0.047 4.047 6 C -0.127 4.127 7 C -0.043 4.043 8 N -0.230 5.230 9 C -0.091 4.091 10 C -0.136 4.136 11 C -0.112 4.112 12 C -0.155 4.155 13 C -0.025 4.025 14 N -0.346 5.346 15 C 0.016 3.984 16 C -0.062 4.062 17 C -0.560 4.560 18 H 0.092 0.908 19 C -0.132 4.132 20 N -0.538 5.538 21 Si 0.707 3.293 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.192 1.192 25 C 0.309 3.691 26 O -0.404 6.404 27 C -0.068 4.068 28 C -0.096 4.096 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.170 0.830 33 H 0.173 0.827 34 H 0.109 0.891 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.111 0.889 41 H 0.102 0.898 42 H 0.097 0.903 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.094 0.906 46 H 0.037 0.963 47 H 0.031 0.969 48 H 0.074 0.926 49 H 0.111 0.889 50 H 0.072 0.928 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.545 27.548 5.012 28.006 hybrid contribution -0.426 -1.329 -1.254 1.876 sum 0.119 26.220 3.758 26.488 Atomic orbital electron populations 1.20735 0.90153 1.03257 1.02691 1.20925 0.97640 0.94022 1.01356 1.22661 0.90039 0.97381 0.96248 1.67712 1.08290 1.31222 1.11834 1.22627 1.00304 0.86844 0.94881 1.20743 0.94165 0.96506 1.01263 1.21205 0.99351 0.93182 0.90572 1.65120 1.23454 1.23857 1.10545 1.23318 0.91594 0.99553 0.94589 1.22320 0.98728 0.95116 0.97468 1.21546 0.97186 0.95095 0.97325 1.22665 0.98122 0.95385 0.99374 1.22145 0.86606 0.94554 0.99219 1.48687 1.16853 1.07413 1.61645 1.21604 1.00513 0.76390 0.99865 1.19884 0.96125 0.97282 0.92879 1.20954 1.38251 0.93714 1.03104 0.90789 1.24978 0.95314 0.94660 0.98231 1.69904 1.47140 1.08979 1.27817 0.86772 0.80175 0.80406 0.81924 1.20223 1.21224 1.19180 1.20251 0.85169 0.85799 0.77875 1.90699 1.19430 1.86398 1.43891 1.22707 1.00413 0.87998 0.95727 1.21516 0.93537 0.98417 0.96171 0.90858 0.91157 0.91128 0.83016 0.82697 0.89147 0.93034 0.92832 0.90173 0.90386 0.89865 0.88891 0.89810 0.90286 0.91095 0.90917 0.90584 0.96277 0.96931 0.92610 0.88935 0.92831 0.84967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.04 36.01 0.36 -0.32 16 2 C -0.14 -1.18 5.90 -104.48 -0.62 -1.79 16 3 C 0.09 0.85 10.86 -17.55 -0.19 0.66 16 4 N -0.48 -5.22 10.36 -13.25 -0.14 -5.36 16 5 C 0.11 1.10 10.86 -17.55 -0.19 0.91 16 6 C -0.12 -1.22 4.60 -104.48 -0.48 -1.70 16 7 C 0.09 0.84 5.21 -4.98 -0.03 0.82 16 8 N -0.51 -5.37 5.40 -231.99 -1.25 -6.62 16 9 C 0.04 0.40 5.00 -1.69 -0.01 0.40 16 10 C -0.10 -1.06 6.02 -25.27 -0.15 -1.22 16 11 C -0.11 -1.30 0.77 -155.25 -0.12 -1.42 16 12 C -0.12 -1.10 6.11 -25.52 -0.16 -1.25 16 13 C 0.10 1.16 7.37 -2.94 -0.02 1.14 16 14 N -0.61 -10.23 2.94 -172.52 -0.51 -10.74 16 15 C 0.14 2.73 5.88 -4.04 -0.02 2.70 16 16 C -0.02 -0.56 4.37 -27.88 -0.12 -0.69 16 17 C -0.52 -14.84 9.66 -34.44 -0.33 -15.17 16 18 H 0.07 2.23 7.99 -52.48 -0.42 1.81 16 19 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 20 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 21 Si 0.88 21.95 27.47 -169.99 -4.67 17.28 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.27 -6.57 6.54 56.52 0.37 -6.20 16 25 C 0.52 8.92 6.48 -11.22 -0.07 8.85 16 26 O -0.53 -11.14 17.45 5.56 0.10 -11.04 16 27 C 0.06 0.69 6.06 -3.12 -0.02 0.67 16 28 C -0.07 -0.67 8.21 -39.27 -0.32 -0.99 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.43 8.10 -51.92 -0.42 0.01 16 31 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 32 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 33 H 0.16 1.29 8.06 -52.49 -0.42 0.86 16 34 H 0.09 0.78 8.09 -51.92 -0.42 0.36 16 35 H 0.05 0.57 7.77 -51.93 -0.40 0.17 16 36 H 0.05 0.67 7.11 -51.93 -0.37 0.30 16 37 H 0.08 0.84 7.79 -51.93 -0.40 0.43 16 38 H 0.08 0.93 7.81 -51.93 -0.41 0.53 16 39 H 0.08 0.75 7.83 -51.93 -0.41 0.34 16 40 H 0.09 0.68 7.43 -51.93 -0.39 0.30 16 41 H 0.08 0.68 7.87 -51.93 -0.41 0.27 16 42 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 44 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.08 1.64 7.95 -51.92 -0.41 1.22 16 46 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 47 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 48 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 49 H 0.09 0.90 7.31 -51.93 -0.38 0.52 16 50 H 0.05 0.74 7.18 -51.93 -0.37 0.37 16 51 H 0.13 1.23 7.45 -52.49 -0.39 0.84 16 LS Contribution 404.74 15.07 6.10 6.10 Total: -1.00 -34.43 404.74 -10.68 -45.11 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -8.49 Total: -1.36 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -2.59 Total: -6.44 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: -1.13 Total: -49.64 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.10 Total: -11.04 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.28 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.43 -10.68 -45.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272840607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.619 kcal (2) G-P(sol) polarization free energy of solvation -34.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds