Wall clock time and date at job start Wed Apr 1 2020 02:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38224 * 120.42053 * 2 1 4 4 N 1.31855 * 120.76704 * 179.97438 * 3 2 1 5 5 C 1.31892 * 121.72057 * 0.02562 * 4 3 2 6 6 C 1.38176 * 120.76979 * 359.97438 * 5 4 3 7 7 C 1.50695 * 120.42244 * 180.02562 * 6 5 4 8 8 N 1.46901 * 109.47490 * 89.99504 * 7 6 5 9 9 C 1.48700 * 111.04246 * 52.57031 * 8 7 6 10 10 C 1.55156 * 103.38444 * 159.10397 * 9 8 7 11 11 C 1.53610 * 102.66251 * 323.43800 * 10 9 8 12 12 C 1.53608 * 110.86289 * 142.29989 * 11 10 9 13 13 C 1.54704 * 101.51725 * 144.57358 * 12 11 10 14 14 N 1.46877 * 105.52202 * 335.47850 * 13 12 11 15 15 C 1.46497 * 124.37214 * 196.84858 * 14 13 12 16 16 C 1.53006 * 109.46954 * 269.99269 * 15 14 13 17 17 C 1.50698 * 109.46936 * 180.02562 * 16 15 14 18 18 H 1.08004 * 120.00048 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99712 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99599 * 179.97438 * 19 17 16 21 21 Si 1.86793 * 120.00097 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47446 * 90.00197 * 21 19 17 23 23 H 1.48507 * 109.47108 * 210.00269 * 21 19 17 24 24 H 1.48499 * 109.47090 * 329.99657 * 21 19 17 25 25 C 1.34757 * 111.25263 * 16.82299 * 14 13 12 26 26 O 1.21282 * 125.12778 * 179.00407 * 25 14 13 27 27 C 1.48185 * 111.00044 * 170.00273 * 8 7 6 28 28 C 1.38630 * 120.41885 * 180.21899 * 2 1 3 29 29 H 1.08993 * 109.47417 * 89.99647 * 1 2 3 30 30 H 1.09008 * 109.47025 * 209.99948 * 1 2 3 31 31 H 1.09002 * 109.47015 * 329.99280 * 1 2 3 32 32 H 1.08001 * 119.61685 * 0.02562 * 3 2 1 33 33 H 1.08000 * 119.61325 * 180.02562 * 5 4 3 34 34 H 1.09008 * 109.47046 * 329.99646 * 7 6 5 35 35 H 1.09003 * 109.47060 * 210.00231 * 7 6 5 36 36 H 1.09002 * 110.60589 * 40.63555 * 9 8 7 37 37 H 1.08999 * 110.65115 * 277.59402 * 9 8 7 38 38 H 1.08998 * 110.77533 * 205.14341 * 10 9 8 39 39 H 1.09001 * 110.76825 * 81.72670 * 10 9 8 40 40 H 1.09002 * 111.01471 * 262.63320 * 12 11 10 41 41 H 1.08995 * 111.01846 * 26.51381 * 12 11 10 42 42 H 1.08994 * 110.24049 * 216.45843 * 13 12 11 43 43 H 1.09011 * 110.30763 * 94.52623 * 13 12 11 44 44 H 1.08995 * 109.47417 * 29.99523 * 15 14 13 45 45 H 1.09007 * 109.46958 * 149.99890 * 15 14 13 46 46 H 1.08995 * 109.47267 * 300.00346 * 16 15 14 47 47 H 1.08998 * 109.46842 * 60.00480 * 16 15 14 48 48 H 0.96998 * 119.99904 * 179.97438 * 20 19 17 49 49 H 1.09002 * 110.02047 * 95.04502 * 27 8 7 50 50 H 1.08997 * 110.01692 * 333.69549 * 27 8 7 51 51 H 1.07998 * 120.79075 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.1999 0.0005 5 6 4.2256 0.0822 0.0005 6 6 3.5948 -1.1471 0.0005 7 6 4.4026 -2.4193 0.0012 8 7 4.6647 -2.8324 1.3863 9 6 3.4032 -2.9018 2.1705 10 6 3.7682 -3.8338 3.3561 11 6 4.7065 -4.8591 2.7019 12 6 5.8476 -5.2430 3.6559 13 6 6.0450 -6.7391 3.3151 14 7 4.7595 -7.1901 2.7660 15 6 4.3633 -8.5943 2.6345 16 6 4.8033 -9.1224 1.2675 17 6 4.3952 -10.5667 1.1320 18 1 3.8738 -11.0587 1.9398 19 6 4.6875 -11.2601 -0.0234 20 7 4.3318 -12.5208 -0.1415 21 14 5.5886 -10.4091 -1.4208 22 1 7.0529 -10.5807 -1.2428 23 1 5.1737 -11.0080 -2.7148 24 1 5.2556 -8.9619 -1.4159 25 6 3.9914 -6.1453 2.3995 26 8 2.8890 -6.2305 1.9010 27 6 5.2454 -4.1949 1.4333 28 6 2.2089 -1.1955 -0.0046 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8901 0.5139 31 1 -0.3633 0.8899 0.5140 32 1 1.6675 2.1276 0.0004 33 1 5.3047 0.1285 0.0014 34 1 5.3489 -2.2490 -0.5124 35 1 3.8463 -3.2032 -0.5128 36 1 2.6028 -3.3369 1.5719 37 1 3.1202 -1.9132 2.5319 38 1 2.8779 -4.3223 3.7522 39 1 4.2866 -3.2793 4.1383 40 1 6.7489 -4.6701 3.4378 41 1 5.5473 -5.1154 4.6959 42 1 6.2886 -7.3021 4.2160 43 1 6.8343 -6.8570 2.5725 44 1 4.8383 -9.1810 3.4207 45 1 3.2800 -8.6761 2.7241 46 1 4.3283 -8.5357 0.4813 47 1 5.8865 -9.0406 1.1779 48 1 4.5370 -13.0085 -0.9544 49 1 6.3329 -4.1358 1.4762 50 1 4.9371 -4.7623 0.5552 51 1 1.6888 -2.1419 -0.0086 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272840607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:55 Heat of formation + Delta-G solvation = -18.514089 kcal Electronic energy + Delta-G solvation = -30232.931807 eV Core-core repulsion = 26323.738248 eV Total energy + Delta-G solvation = -3909.193560 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.25155 -41.28750 -39.12064 -37.54567 -36.00795 -34.86048 -34.53068 -33.38123 -31.69964 -30.70312 -29.04999 -28.22573 -27.37439 -26.86085 -24.46055 -23.88291 -23.43347 -22.92215 -21.68103 -21.45945 -19.95532 -19.10733 -17.89917 -17.66118 -17.59202 -17.23160 -16.89362 -16.50941 -16.09197 -15.92268 -15.56195 -15.15181 -15.07015 -14.95609 -14.84887 -14.50471 -14.45416 -14.22725 -14.02751 -13.83293 -13.72996 -13.59518 -13.39447 -13.25978 -13.17258 -12.99269 -12.95627 -12.51141 -12.45659 -12.36259 -12.17282 -12.01395 -11.92084 -11.77493 -11.64015 -11.56160 -10.84650 -10.69667 -10.61764 -10.41925 -9.84519 -9.63870 -9.53008 -8.37330 -6.42335 0.09984 0.26603 1.26519 1.30749 1.41684 1.49483 2.07109 2.28306 2.67170 2.97364 3.02184 3.26253 3.35278 3.42755 3.55220 3.74709 3.79212 3.90700 3.96666 4.01898 4.02837 4.19289 4.22189 4.26134 4.32716 4.35756 4.45995 4.51051 4.55475 4.62005 4.71967 4.73211 4.74711 4.76643 4.80698 4.82850 4.87039 4.93633 4.99190 5.10300 5.12220 5.15018 5.20151 5.24375 5.24939 5.30603 5.45572 5.65835 5.70223 5.75242 5.83765 6.16162 6.23269 6.63988 6.99978 7.14326 7.23035 8.78981 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013761 B = 0.002576 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.226745 B =10865.229570 C =11600.664569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.137 4.137 3 C 0.088 3.912 4 N -0.504 5.504 5 C 0.104 3.896 6 C -0.129 4.129 7 C 0.087 3.913 8 N -0.495 5.495 9 C 0.041 3.959 10 C -0.094 4.094 11 C -0.101 4.101 12 C -0.101 4.101 13 C 0.088 3.912 14 N -0.619 5.619 15 C 0.147 3.853 16 C -0.012 4.012 17 C -0.534 4.534 18 H 0.040 0.960 19 C 0.010 3.990 20 N -0.944 5.944 21 Si 0.949 3.051 22 H -0.254 1.254 23 H -0.282 1.282 24 H -0.265 1.265 25 C 0.509 3.491 26 O -0.583 6.583 27 C 0.061 3.939 28 C -0.083 4.083 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.176 0.824 33 H 0.170 0.830 34 H 0.107 0.893 35 H 0.032 0.968 36 H 0.028 0.972 37 H 0.088 0.912 38 H 0.061 0.939 39 H 0.114 0.886 40 H 0.127 0.873 41 H 0.104 0.896 42 H 0.099 0.901 43 H 0.079 0.921 44 H 0.091 0.909 45 H 0.048 0.952 46 H -0.004 1.004 47 H 0.028 0.972 48 H 0.268 0.732 49 H 0.122 0.878 50 H 0.023 0.977 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.824 29.643 5.899 30.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.139 4.139 3 C -0.069 4.069 4 N -0.211 5.211 5 C -0.053 4.053 6 C -0.131 4.131 7 C -0.041 4.041 8 N -0.218 5.218 9 C -0.087 4.087 10 C -0.132 4.132 11 C -0.105 4.105 12 C -0.138 4.138 13 C -0.034 4.034 14 N -0.350 5.350 15 C 0.025 3.975 16 C -0.051 4.051 17 C -0.572 4.572 18 H 0.058 0.942 19 C -0.188 4.188 20 N -0.584 5.584 21 Si 0.772 3.228 22 H -0.178 1.178 23 H -0.207 1.207 24 H -0.189 1.189 25 C 0.297 3.703 26 O -0.463 6.463 27 C -0.067 4.067 28 C -0.110 4.110 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.193 0.807 33 H 0.187 0.813 34 H 0.125 0.875 35 H 0.050 0.950 36 H 0.046 0.954 37 H 0.106 0.894 38 H 0.080 0.920 39 H 0.132 0.868 40 H 0.145 0.855 41 H 0.122 0.878 42 H 0.118 0.882 43 H 0.097 0.903 44 H 0.110 0.890 45 H 0.067 0.933 46 H 0.014 0.986 47 H 0.047 0.953 48 H 0.077 0.923 49 H 0.140 0.860 50 H 0.041 0.959 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.081 30.528 5.750 31.217 hybrid contribution -1.318 -2.305 -1.448 3.024 sum 1.763 28.224 4.302 28.604 Atomic orbital electron populations 1.20782 0.88496 1.04011 1.03385 1.21169 0.98882 0.93477 1.00374 1.23082 0.89779 0.98456 0.95557 1.67742 1.09174 1.31638 1.12587 1.22840 1.01040 0.86565 0.94814 1.20717 0.94183 0.96416 1.01771 1.21209 0.99950 0.92724 0.90207 1.65205 1.22894 1.22981 1.10762 1.23253 0.91194 0.99738 0.94518 1.22358 0.98209 0.94717 0.97908 1.21542 0.97985 0.92455 0.98529 1.22755 0.98061 0.93421 0.99575 1.22542 0.84103 0.96608 1.00112 1.48777 1.18881 1.05807 1.61564 1.21176 0.99081 0.79106 0.98168 1.19721 0.96569 0.94237 0.94546 1.21275 1.37716 0.95864 1.02348 0.94171 1.25926 0.96336 0.95303 1.01185 1.70043 1.48725 1.10690 1.28942 0.85682 0.79857 0.79017 0.78200 1.17805 1.20745 1.18941 1.21237 0.84664 0.87749 0.76623 1.90657 1.22026 1.87478 1.46167 1.22791 1.01935 0.87860 0.94149 1.21617 0.93842 0.98720 0.96773 0.90104 0.91425 0.89363 0.80695 0.81290 0.87483 0.94998 0.95378 0.89410 0.92038 0.86758 0.85454 0.87784 0.88229 0.90271 0.89036 0.93344 0.98602 0.95322 0.92258 0.86038 0.95900 0.85666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 10.04 71.24 0.71 -0.50 16 2 C -0.14 -2.23 5.90 -19.77 -0.12 -2.35 16 3 C 0.09 1.47 10.86 84.69 0.92 2.39 16 4 N -0.50 -10.19 10.36 -195.84 -2.03 -12.22 16 5 C 0.10 1.94 10.86 84.67 0.92 2.86 16 6 C -0.13 -2.45 4.60 -19.78 -0.09 -2.54 16 7 C 0.09 1.68 5.21 85.56 0.45 2.13 16 8 N -0.49 -9.71 5.40 -887.89 -4.80 -14.51 16 9 C 0.04 0.87 5.00 86.69 0.43 1.30 16 10 C -0.09 -1.87 6.02 31.54 0.19 -1.68 16 11 C -0.10 -2.25 0.77 -52.66 -0.04 -2.29 16 12 C -0.10 -1.43 6.11 31.38 0.19 -1.23 16 13 C 0.09 1.79 7.37 86.89 0.64 2.43 16 14 N -0.62 -20.17 2.94 -818.13 -2.41 -22.58 16 15 C 0.15 5.96 5.88 86.38 0.51 6.47 16 16 C -0.01 -0.60 4.37 29.85 0.13 -0.47 16 17 C -0.53 -31.29 9.66 25.60 0.25 -31.05 16 18 H 0.04 2.55 7.99 -2.91 -0.02 2.52 16 19 C 0.01 0.61 5.47 84.65 0.46 1.07 16 20 N -0.94 -59.52 13.96 21.45 0.30 -59.22 16 21 Si 0.95 45.42 27.47 68.60 1.88 47.31 16 22 H -0.25 -11.19 7.11 99.48 0.71 -10.49 16 23 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 24 H -0.26 -12.48 6.54 99.48 0.65 -11.83 16 25 C 0.51 17.46 6.48 87.52 0.57 18.03 16 26 O -0.58 -25.98 17.45 -3.04 -0.05 -26.04 16 27 C 0.06 1.29 6.06 86.05 0.52 1.81 16 28 C -0.08 -1.59 8.21 22.47 0.18 -1.40 16 29 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 0.79 8.10 -2.38 -0.02 0.77 16 31 H 0.09 0.67 8.09 -2.39 -0.02 0.65 16 32 H 0.18 1.92 8.06 -2.91 -0.02 1.90 16 33 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16 34 H 0.11 1.68 8.09 -2.38 -0.02 1.66 16 35 H 0.03 0.74 7.77 -2.39 -0.02 0.72 16 36 H 0.03 0.74 7.11 -2.39 -0.02 0.72 16 37 H 0.09 1.73 7.79 -2.39 -0.02 1.71 16 38 H 0.06 1.45 7.81 -2.39 -0.02 1.43 16 39 H 0.11 1.60 7.83 -2.39 -0.02 1.58 16 40 H 0.13 1.05 7.43 -2.39 -0.02 1.03 16 41 H 0.10 1.13 7.87 -2.39 -0.02 1.12 16 42 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 44 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 45 H 0.05 2.20 7.95 -2.38 -0.02 2.18 16 46 H 0.00 -0.24 7.20 -2.39 -0.02 -0.25 16 47 H 0.03 1.30 7.57 -2.39 -0.02 1.28 16 48 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 49 H 0.12 1.88 7.31 -2.39 -0.02 1.86 16 50 H 0.02 0.63 7.18 -2.39 -0.02 0.61 16 51 H 0.13 2.50 7.45 -2.91 -0.02 2.48 16 Total: -1.00 -79.05 404.74 0.57 -78.48 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 0.85 Total: 13.80 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: 6.83 Total: -5.02 kcal Atomic # 7 Polarization: -99.59 SS G_CDS: -8.94 Total: -108.53 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.05 Total: -26.04 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.88 Total: 47.31 kcal Total: -79.05 0.57 -78.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272840607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.965 kcal (2) G-P(sol) polarization free energy of solvation -79.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds