Wall clock time and date at job start Wed Apr 1 2020 02:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38215 * 120.41867 * 2 1 4 4 N 1.31854 * 120.76332 * 179.97438 * 3 2 1 5 5 C 1.31888 * 121.72838 * 0.02562 * 4 3 2 6 6 C 1.38184 * 120.76199 * 0.02562 * 5 4 3 7 7 C 1.50694 * 120.41756 * 179.97438 * 6 5 4 8 8 N 1.46894 * 109.47149 * 270.01646 * 7 6 5 9 9 C 1.47716 * 111.00111 * 69.87657 * 8 7 6 10 10 C 1.54402 * 107.20275 * 122.13272 * 9 8 7 11 11 C 1.55325 * 103.13541 * 22.19058 * 10 9 8 12 12 C 1.46730 * 111.00192 * 190.34631 * 8 7 6 13 13 C 1.53608 * 111.40108 * 94.57112 * 12 8 7 14 14 C 1.54701 * 101.51832 * 262.08448 * 13 12 8 15 15 N 1.46880 * 105.51887 * 335.47208 * 14 13 12 16 16 C 1.46502 * 124.37891 * 196.80254 * 15 14 13 17 17 C 1.52993 * 109.47081 * 270.00127 * 16 15 14 18 18 C 1.50703 * 109.47345 * 179.97438 * 17 16 15 19 19 H 1.08006 * 119.99608 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00669 * 179.97438 * 18 17 16 21 21 N 1.31518 * 119.99455 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00314 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46905 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46858 * 120.00287 * 22 20 18 25 25 H 1.48502 * 109.46811 * 239.99944 * 22 20 18 26 26 C 1.34754 * 111.25379 * 16.82677 * 15 14 13 27 27 O 1.21272 * 125.13270 * 178.97271 * 26 15 14 28 28 C 1.38628 * 120.41554 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.46835 * 90.00158 * 1 2 3 30 30 H 1.09001 * 109.46934 * 209.99675 * 1 2 3 31 31 H 1.08992 * 109.47378 * 330.00016 * 1 2 3 32 32 H 1.07994 * 119.62230 * 359.95780 * 3 2 1 33 33 H 1.07999 * 119.61890 * 179.97438 * 5 4 3 34 34 H 1.09005 * 109.47215 * 30.02243 * 7 6 5 35 35 H 1.09007 * 109.47041 * 150.01600 * 7 6 5 36 36 H 1.08997 * 109.89607 * 241.53323 * 9 8 7 37 37 H 1.09004 * 109.89225 * 2.73653 * 9 8 7 38 38 H 1.09001 * 110.68695 * 140.60559 * 10 9 8 39 39 H 1.09010 * 110.68582 * 263.60958 * 10 9 8 40 40 H 1.09000 * 111.00736 * 83.47392 * 11 10 9 41 41 H 1.08994 * 111.01540 * 207.34879 * 11 10 9 42 42 H 1.08998 * 111.01502 * 20.13945 * 13 12 8 43 43 H 1.08994 * 111.01645 * 144.02489 * 13 12 8 44 44 H 1.09004 * 110.23646 * 216.46517 * 14 13 12 45 45 H 1.08990 * 110.31277 * 94.52311 * 14 13 12 46 46 H 1.09008 * 109.46580 * 29.99964 * 16 15 14 47 47 H 1.09002 * 109.47144 * 149.99417 * 16 15 14 48 48 H 1.08995 * 109.47406 * 299.99667 * 17 16 15 49 49 H 1.09002 * 109.47408 * 60.00091 * 17 16 15 50 50 H 0.97006 * 119.99527 * 179.97438 * 21 20 18 51 51 H 1.08003 * 120.79539 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1998 0.0005 5 6 4.2257 0.0823 0.0005 6 6 3.5948 -1.1472 -0.0005 7 6 4.4027 -2.4193 -0.0011 8 7 4.6660 -2.8315 -1.3862 9 6 5.6143 -1.9082 -2.0421 10 6 6.8200 -2.7501 -2.5126 11 6 6.2343 -4.1859 -2.6025 12 6 5.2334 -4.1838 -1.4335 13 6 4.1419 -5.2423 -1.6519 14 6 3.8918 -5.7311 -0.2056 15 7 5.1328 -5.4448 0.5261 16 6 5.4891 -6.0415 1.8157 17 6 4.9587 -5.1612 2.9490 18 6 5.3247 -5.7752 4.2756 19 1 5.8805 -6.7008 4.3073 20 6 4.9510 -5.1552 5.4490 21 7 4.2746 -4.0279 5.4104 22 14 5.4053 -5.9161 7.0934 23 1 6.1611 -7.1738 6.8648 24 1 6.2479 -4.9656 7.8626 25 1 4.1685 -6.2134 7.8598 26 6 5.9011 -4.5619 -0.1418 27 8 6.9700 -4.1366 0.2419 28 6 2.2089 -1.1955 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.6676 2.1275 -0.0007 33 1 5.3047 0.1285 0.0005 34 1 5.3484 -2.2493 0.5136 35 1 3.8458 -3.2036 0.5118 36 1 5.1367 -1.4330 -2.8990 37 1 5.9455 -1.1505 -1.3319 38 1 7.1667 -2.4138 -3.4897 39 1 7.6285 -2.7063 -1.7827 40 1 5.7244 -4.3411 -3.5533 41 1 7.0112 -4.9352 -2.4505 42 1 3.2423 -4.7947 -2.0743 43 1 4.5052 -6.0543 -2.2817 44 1 3.6890 -6.8021 -0.1994 45 1 3.0582 -5.1874 0.2387 46 1 5.0476 -7.0354 1.8906 47 1 6.5736 -6.1190 1.8929 48 1 5.4001 -4.1674 2.8741 49 1 3.8741 -5.0837 2.8717 50 1 4.0113 -3.5919 6.2360 51 1 1.6888 -2.1420 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272841590.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:23 Heat of formation + Delta-G solvation = 4.453292 kcal Electronic energy + Delta-G solvation = -31489.703821 eV Core-core repulsion = 27581.506201 eV Total energy + Delta-G solvation = -3908.197619 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.36994 -40.10460 -37.56285 -36.07689 -34.08383 -33.56285 -33.51042 -31.84191 -30.62170 -29.15987 -27.79962 -27.30098 -25.85831 -25.13307 -23.63368 -22.96482 -22.07912 -21.33033 -20.68416 -20.16878 -18.57514 -17.01300 -16.91077 -16.67983 -16.39403 -15.93334 -15.34485 -15.12506 -14.64689 -14.57849 -14.31913 -14.17869 -13.58603 -13.45165 -13.26845 -13.04319 -12.95116 -12.92064 -12.86470 -12.71007 -12.61809 -12.42966 -12.36817 -12.11539 -11.87782 -11.51983 -11.41879 -11.25410 -11.00672 -10.95153 -10.77566 -10.75382 -10.66508 -10.05526 -9.90038 -9.63233 -9.54800 -9.36761 -9.23574 -8.80990 -8.41930 -8.30305 -8.07580 -6.06248 -4.09916 1.12426 1.35610 2.82940 3.27892 3.35051 3.38369 3.46832 3.70134 4.04842 4.33200 4.37497 4.42492 4.52058 4.68445 4.74811 4.79655 4.87283 4.99383 5.04615 5.07966 5.10096 5.22931 5.24892 5.30239 5.35875 5.46716 5.54428 5.55656 5.66580 5.68481 5.75388 5.76748 5.82582 5.88013 5.89988 5.94452 5.95929 6.03507 6.07962 6.22543 6.25674 6.36910 6.40053 6.74047 6.75265 6.86493 6.89463 6.93839 7.42667 7.60565 7.77666 7.92120 8.01752 8.28747 8.57124 8.96531 9.54665 11.04950 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.008165 B = 0.004208 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3428.320322 B = 6652.779196 C = 8790.126126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.140 4.140 3 C 0.091 3.909 4 N -0.482 5.482 5 C 0.098 3.902 6 C -0.109 4.109 7 C 0.079 3.921 8 N -0.489 5.489 9 C 0.039 3.961 10 C -0.140 4.140 11 C -0.103 4.103 12 C 0.064 3.936 13 C -0.116 4.116 14 C 0.098 3.902 15 N -0.609 5.609 16 C 0.127 3.873 17 C 0.014 3.986 18 C -0.523 4.523 19 H 0.057 0.943 20 C 0.060 3.940 21 N -0.891 5.891 22 Si 0.893 3.107 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.283 1.283 26 C 0.502 3.498 27 O -0.526 6.526 28 C -0.054 4.054 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.061 0.939 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.098 0.902 43 H 0.084 0.916 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.066 0.934 47 H 0.069 0.931 48 H 0.019 0.981 49 H 0.016 0.984 50 H 0.261 0.739 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.887 3.377 -18.974 20.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.142 4.142 3 C -0.067 4.067 4 N -0.190 5.190 5 C -0.059 4.059 6 C -0.112 4.112 7 C -0.049 4.049 8 N -0.213 5.213 9 C -0.088 4.088 10 C -0.179 4.179 11 C -0.142 4.142 12 C -0.029 4.029 13 C -0.154 4.154 14 C -0.025 4.025 15 N -0.342 5.342 16 C 0.007 3.993 17 C -0.024 4.024 18 C -0.562 4.562 19 H 0.075 0.925 20 C -0.142 4.142 21 N -0.530 5.530 22 Si 0.721 3.279 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.210 1.210 26 C 0.287 3.713 27 O -0.402 6.402 28 C -0.080 4.080 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.168 0.832 33 H 0.167 0.833 34 H 0.080 0.920 35 H 0.112 0.888 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.117 0.883 43 H 0.102 0.898 44 H 0.095 0.905 45 H 0.089 0.911 46 H 0.084 0.916 47 H 0.088 0.912 48 H 0.037 0.963 49 H 0.034 0.966 50 H 0.070 0.930 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.405 4.495 -18.814 20.085 hybrid contribution 0.405 -1.176 1.662 2.076 sum -5.000 3.320 -17.152 18.172 Atomic orbital electron populations 1.20701 0.90305 1.03174 1.02345 1.20906 0.97513 0.94129 1.01608 1.22594 0.90003 0.97323 0.96767 1.67657 1.08343 1.31075 1.11903 1.22635 1.00029 0.87314 0.95914 1.20651 0.94561 0.95796 1.00169 1.21320 0.99460 0.94763 0.89314 1.63743 1.41869 0.99979 1.15737 1.23001 0.91527 0.95231 0.99090 1.22845 0.98427 0.94611 1.01987 1.22451 0.97174 0.97869 0.96693 1.22092 0.94869 0.91108 0.94813 1.22533 0.99508 0.97123 0.96237 1.22154 0.87761 1.01338 0.91286 1.48706 1.19723 1.44002 1.21798 1.21836 1.00391 0.96769 0.80343 1.19383 0.96332 0.95310 0.91365 1.21104 1.35890 1.08517 0.90639 0.92462 1.24988 0.95004 0.94849 0.99311 1.69981 1.38385 1.17083 1.27537 0.86516 0.78216 0.79342 0.83821 1.19646 1.20936 1.20959 1.20839 0.84811 0.79273 0.86389 1.90692 1.21328 1.55685 1.72472 1.21355 0.93257 0.98205 0.95221 0.91071 0.91199 0.91320 0.83177 0.83311 0.92039 0.88797 0.90323 0.92183 0.90829 0.90217 0.89939 0.90499 0.88308 0.89779 0.90462 0.91137 0.91564 0.91213 0.96263 0.96553 0.92979 0.84839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 10.04 36.01 0.36 -0.56 16 2 C -0.14 -1.66 5.90 -104.48 -0.62 -2.27 16 3 C 0.09 1.14 10.86 -17.55 -0.19 0.95 16 4 N -0.48 -7.14 10.36 -13.26 -0.14 -7.28 16 5 C 0.10 1.45 9.91 -17.55 -0.17 1.28 16 6 C -0.11 -1.60 5.12 -104.48 -0.53 -2.14 16 7 C 0.08 1.24 3.84 -4.98 -0.02 1.22 16 8 N -0.49 -6.47 4.81 -219.63 -1.06 -7.53 16 9 C 0.04 0.48 6.31 -2.64 -0.02 0.46 16 10 C -0.14 -1.62 6.64 -24.76 -0.16 -1.79 16 11 C -0.10 -1.17 5.81 -25.03 -0.15 -1.32 16 12 C 0.06 0.85 0.72 -132.29 -0.10 0.76 16 13 C -0.12 -1.23 6.41 -25.52 -0.16 -1.39 16 14 C 0.10 1.27 6.66 -2.94 -0.02 1.25 16 15 N -0.61 -10.60 2.69 -172.53 -0.46 -11.07 16 16 C 0.13 2.62 5.88 -4.04 -0.02 2.59 16 17 C 0.01 0.36 5.30 -27.89 -0.15 0.21 16 18 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 19 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 21 N -0.89 -26.75 13.29 55.43 0.74 -26.02 16 22 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 26 C 0.50 8.91 4.78 -11.22 -0.05 8.86 16 27 O -0.53 -11.37 16.25 5.56 0.09 -11.28 16 28 C -0.05 -0.71 9.54 -39.28 -0.37 -1.09 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 31 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 32 H 0.15 1.46 8.06 -52.49 -0.42 1.03 16 33 H 0.15 2.06 6.91 -52.49 -0.36 1.70 16 34 H 0.06 1.15 6.98 -51.93 -0.36 0.79 16 35 H 0.09 1.61 6.05 -51.92 -0.31 1.29 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.78 5.48 -51.93 -0.28 0.49 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 1.10 7.59 -51.92 -0.39 0.71 16 40 H 0.08 0.75 8.07 -51.93 -0.42 0.33 16 41 H 0.08 0.91 8.00 -51.93 -0.42 0.50 16 42 H 0.10 0.92 8.07 -51.93 -0.42 0.51 16 43 H 0.08 0.74 7.92 -51.93 -0.41 0.33 16 44 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.07 0.94 7.51 -51.93 -0.39 0.55 16 46 H 0.07 1.24 8.14 -51.92 -0.42 0.82 16 47 H 0.07 1.53 7.95 -51.93 -0.41 1.12 16 48 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 51 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 LS Contribution 402.40 15.07 6.06 6.06 Total: -1.00 -33.53 402.40 -10.95 -44.48 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -8.37 Total: 2.33 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -2.79 Total: -6.31 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: -0.92 Total: -51.90 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.09 Total: -11.28 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.53 -10.95 -44.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272841590.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.936 kcal (2) G-P(sol) polarization free energy of solvation -33.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds