Wall clock time and date at job start Wed Apr 1 2020 02:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38215 * 120.41867 * 2 1 4 4 N 1.31854 * 120.76332 * 179.97438 * 3 2 1 5 5 C 1.31888 * 121.72838 * 0.02562 * 4 3 2 6 6 C 1.38184 * 120.76199 * 0.02562 * 5 4 3 7 7 C 1.50694 * 120.41756 * 179.97438 * 6 5 4 8 8 N 1.46894 * 109.47149 * 270.01646 * 7 6 5 9 9 C 1.47716 * 111.00111 * 69.87657 * 8 7 6 10 10 C 1.54402 * 107.20275 * 122.13272 * 9 8 7 11 11 C 1.55325 * 103.13541 * 22.19058 * 10 9 8 12 12 C 1.46730 * 111.00192 * 190.34631 * 8 7 6 13 13 C 1.53608 * 111.40108 * 94.57112 * 12 8 7 14 14 C 1.54701 * 101.51832 * 262.08448 * 13 12 8 15 15 N 1.46880 * 105.51887 * 335.47208 * 14 13 12 16 16 C 1.46502 * 124.37891 * 196.80254 * 15 14 13 17 17 C 1.52993 * 109.47081 * 270.00127 * 16 15 14 18 18 C 1.50703 * 109.47345 * 179.97438 * 17 16 15 19 19 H 1.08006 * 119.99608 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00669 * 179.97438 * 18 17 16 21 21 N 1.31518 * 119.99455 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00314 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46905 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46858 * 120.00287 * 22 20 18 25 25 H 1.48502 * 109.46811 * 239.99944 * 22 20 18 26 26 C 1.34754 * 111.25379 * 16.82677 * 15 14 13 27 27 O 1.21272 * 125.13270 * 178.97271 * 26 15 14 28 28 C 1.38628 * 120.41554 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.46835 * 90.00158 * 1 2 3 30 30 H 1.09001 * 109.46934 * 209.99675 * 1 2 3 31 31 H 1.08992 * 109.47378 * 330.00016 * 1 2 3 32 32 H 1.07994 * 119.62230 * 359.95780 * 3 2 1 33 33 H 1.07999 * 119.61890 * 179.97438 * 5 4 3 34 34 H 1.09005 * 109.47215 * 30.02243 * 7 6 5 35 35 H 1.09007 * 109.47041 * 150.01600 * 7 6 5 36 36 H 1.08997 * 109.89607 * 241.53323 * 9 8 7 37 37 H 1.09004 * 109.89225 * 2.73653 * 9 8 7 38 38 H 1.09001 * 110.68695 * 140.60559 * 10 9 8 39 39 H 1.09010 * 110.68582 * 263.60958 * 10 9 8 40 40 H 1.09000 * 111.00736 * 83.47392 * 11 10 9 41 41 H 1.08994 * 111.01540 * 207.34879 * 11 10 9 42 42 H 1.08998 * 111.01502 * 20.13945 * 13 12 8 43 43 H 1.08994 * 111.01645 * 144.02489 * 13 12 8 44 44 H 1.09004 * 110.23646 * 216.46517 * 14 13 12 45 45 H 1.08990 * 110.31277 * 94.52311 * 14 13 12 46 46 H 1.09008 * 109.46580 * 29.99964 * 16 15 14 47 47 H 1.09002 * 109.47144 * 149.99417 * 16 15 14 48 48 H 1.08995 * 109.47406 * 299.99667 * 17 16 15 49 49 H 1.09002 * 109.47408 * 60.00091 * 17 16 15 50 50 H 0.97006 * 119.99527 * 179.97438 * 21 20 18 51 51 H 1.08003 * 120.79539 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1998 0.0005 5 6 4.2257 0.0823 0.0005 6 6 3.5948 -1.1472 -0.0005 7 6 4.4027 -2.4193 -0.0011 8 7 4.6660 -2.8315 -1.3862 9 6 5.6143 -1.9082 -2.0421 10 6 6.8200 -2.7501 -2.5126 11 6 6.2343 -4.1859 -2.6025 12 6 5.2334 -4.1838 -1.4335 13 6 4.1419 -5.2423 -1.6519 14 6 3.8918 -5.7311 -0.2056 15 7 5.1328 -5.4448 0.5261 16 6 5.4891 -6.0415 1.8157 17 6 4.9587 -5.1612 2.9490 18 6 5.3247 -5.7752 4.2756 19 1 5.8805 -6.7008 4.3073 20 6 4.9510 -5.1552 5.4490 21 7 4.2746 -4.0279 5.4104 22 14 5.4053 -5.9161 7.0934 23 1 6.1611 -7.1738 6.8648 24 1 6.2479 -4.9656 7.8626 25 1 4.1685 -6.2134 7.8598 26 6 5.9011 -4.5619 -0.1418 27 8 6.9700 -4.1366 0.2419 28 6 2.2089 -1.1955 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.6676 2.1275 -0.0007 33 1 5.3047 0.1285 0.0005 34 1 5.3484 -2.2493 0.5136 35 1 3.8458 -3.2036 0.5118 36 1 5.1367 -1.4330 -2.8990 37 1 5.9455 -1.1505 -1.3319 38 1 7.1667 -2.4138 -3.4897 39 1 7.6285 -2.7063 -1.7827 40 1 5.7244 -4.3411 -3.5533 41 1 7.0112 -4.9352 -2.4505 42 1 3.2423 -4.7947 -2.0743 43 1 4.5052 -6.0543 -2.2817 44 1 3.6890 -6.8021 -0.1994 45 1 3.0582 -5.1874 0.2387 46 1 5.0476 -7.0354 1.8906 47 1 6.5736 -6.1190 1.8929 48 1 5.4001 -4.1674 2.8741 49 1 3.8741 -5.0837 2.8717 50 1 4.0113 -3.5919 6.2360 51 1 1.6888 -2.1420 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272841590.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:22 Heat of formation + Delta-G solvation = -17.303906 kcal Electronic energy + Delta-G solvation = -31490.647284 eV Core-core repulsion = 27581.506201 eV Total energy + Delta-G solvation = -3909.141082 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.56965 -41.18739 -38.82148 -37.53239 -35.68827 -34.97662 -34.52869 -33.48995 -31.65232 -30.81319 -28.92081 -28.17589 -27.01806 -26.97428 -24.77267 -24.17132 -23.57197 -22.46600 -21.81456 -21.49036 -19.89345 -18.74157 -18.07558 -17.94405 -17.66348 -17.28857 -16.73632 -16.51770 -16.25285 -15.83531 -15.54903 -15.15871 -14.93836 -14.63724 -14.51971 -14.43906 -14.19202 -14.14137 -14.00387 -13.91943 -13.88141 -13.56478 -13.45438 -13.18264 -13.13738 -12.97798 -12.91042 -12.62364 -12.47888 -12.29987 -12.09074 -12.01561 -11.85653 -11.71847 -11.65807 -11.41620 -10.91157 -10.64771 -10.62425 -10.45573 -9.84090 -9.62436 -9.49483 -8.27515 -6.40482 0.06525 0.29014 1.35280 1.36937 1.45343 1.50194 2.07657 2.37735 2.60534 2.94909 3.06340 3.26754 3.30316 3.49511 3.60702 3.70516 3.77252 3.90567 3.99732 4.01796 4.08640 4.10629 4.19885 4.27599 4.29975 4.36247 4.46090 4.55707 4.61234 4.66487 4.69887 4.77469 4.82029 4.82376 4.86491 4.89010 4.92274 4.99751 5.12001 5.13942 5.19570 5.24013 5.28896 5.30294 5.33180 5.41109 5.55614 5.70316 5.73448 5.77862 5.80457 6.11082 6.23605 6.74837 6.94645 7.14901 7.29834 8.84383 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.008165 B = 0.004208 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3428.320322 B = 6652.779196 C = 8790.126126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.132 4.132 3 C 0.084 3.916 4 N -0.502 5.502 5 C 0.081 3.919 6 C -0.122 4.122 7 C 0.097 3.903 8 N -0.473 5.473 9 C 0.036 3.964 10 C -0.138 4.138 11 C -0.097 4.097 12 C 0.062 3.938 13 C -0.098 4.098 14 C 0.089 3.911 15 N -0.615 5.615 16 C 0.141 3.859 17 C 0.029 3.971 18 C -0.544 4.544 19 H 0.066 0.934 20 C 0.003 3.997 21 N -0.931 5.931 22 Si 0.968 3.032 23 H -0.258 1.258 24 H -0.283 1.283 25 H -0.272 1.272 26 C 0.490 3.510 27 O -0.578 6.578 28 C -0.065 4.065 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.182 0.818 33 H 0.142 0.858 34 H 0.014 0.986 35 H 0.075 0.925 36 H 0.101 0.899 37 H 0.042 0.958 38 H 0.105 0.895 39 H 0.045 0.955 40 H 0.121 0.879 41 H 0.071 0.929 42 H 0.121 0.879 43 H 0.116 0.884 44 H 0.104 0.896 45 H 0.064 0.936 46 H 0.093 0.907 47 H 0.050 0.950 48 H -0.031 1.031 49 H -0.001 1.001 50 H 0.263 0.737 51 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.126 2.144 -21.026 22.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.133 4.133 3 C -0.073 4.073 4 N -0.210 5.210 5 C -0.076 4.076 6 C -0.125 4.125 7 C -0.031 4.031 8 N -0.197 5.197 9 C -0.091 4.091 10 C -0.177 4.177 11 C -0.135 4.135 12 C -0.031 4.031 13 C -0.136 4.136 14 C -0.033 4.033 15 N -0.347 5.347 16 C 0.019 3.981 17 C -0.009 4.009 18 C -0.583 4.583 19 H 0.084 0.916 20 C -0.196 4.196 21 N -0.571 5.571 22 Si 0.792 3.208 23 H -0.182 1.182 24 H -0.209 1.209 25 H -0.198 1.198 26 C 0.277 3.723 27 O -0.458 6.458 28 C -0.091 4.091 29 H 0.110 0.890 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.199 0.801 33 H 0.159 0.841 34 H 0.033 0.967 35 H 0.093 0.907 36 H 0.119 0.881 37 H 0.060 0.940 38 H 0.123 0.877 39 H 0.064 0.936 40 H 0.139 0.861 41 H 0.089 0.911 42 H 0.140 0.860 43 H 0.134 0.866 44 H 0.122 0.878 45 H 0.082 0.918 46 H 0.111 0.889 47 H 0.068 0.932 48 H -0.013 1.013 49 H 0.018 0.982 50 H 0.072 0.928 51 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -7.668 3.238 -20.903 22.500 hybrid contribution 1.070 -0.703 2.329 2.658 sum -6.598 2.534 -18.575 19.874 Atomic orbital electron populations 1.20785 0.87418 1.04119 1.03880 1.21290 0.99464 0.93111 0.99481 1.23186 0.89373 0.99036 0.95751 1.67658 1.09744 1.30947 1.12661 1.22568 1.00000 0.87743 0.97255 1.20596 0.95401 0.94997 1.01471 1.20974 0.97032 0.94881 0.90209 1.63929 1.41818 1.00305 1.13640 1.23098 0.91927 0.94935 0.99178 1.22819 0.97092 0.95219 1.02527 1.22541 0.96651 0.97137 0.97201 1.22292 0.96216 0.91742 0.92824 1.22624 0.99305 0.96816 0.94850 1.22493 0.85344 1.03119 0.92306 1.48786 1.21421 1.43769 1.20771 1.21385 0.99098 0.96917 0.80665 1.19150 0.94807 0.93652 0.93262 1.21566 1.35913 1.08984 0.91800 0.91573 1.25987 0.94695 0.95207 1.03665 1.70129 1.39553 1.18648 1.28751 0.85360 0.78294 0.78724 0.78452 1.18156 1.20931 1.19755 1.21800 0.84217 0.78324 0.87967 1.90649 1.23863 1.57174 1.74072 1.21587 0.92594 0.99599 0.95304 0.89049 0.90939 0.89720 0.80104 0.84065 0.96740 0.90704 0.88098 0.93987 0.87698 0.93612 0.86056 0.91065 0.86025 0.86603 0.87751 0.91818 0.88906 0.93152 1.01312 0.98228 0.92795 0.83621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.49 10.04 71.24 0.72 -0.77 16 2 C -0.13 -2.94 5.90 -19.77 -0.12 -3.05 16 3 C 0.08 2.02 10.86 84.68 0.92 2.94 16 4 N -0.50 -15.19 10.36 -195.85 -2.03 -17.22 16 5 C 0.08 2.56 9.91 84.67 0.84 3.40 16 6 C -0.12 -3.79 5.12 -19.77 -0.10 -3.89 16 7 C 0.10 3.31 3.84 85.56 0.33 3.64 16 8 N -0.47 -12.59 4.81 -848.76 -4.08 -16.67 16 9 C 0.04 0.88 6.31 86.62 0.55 1.43 16 10 C -0.14 -3.15 6.64 31.87 0.21 -2.94 16 11 C -0.10 -2.01 5.81 31.69 0.18 -1.82 16 12 C 0.06 1.61 0.72 3.17 0.00 1.61 16 13 C -0.10 -1.78 6.41 31.38 0.20 -1.58 16 14 C 0.09 2.19 6.66 86.89 0.58 2.77 16 15 N -0.62 -22.07 2.69 -818.16 -2.20 -24.27 16 16 C 0.14 6.07 5.88 86.38 0.51 6.58 16 17 C 0.03 1.60 5.30 29.85 0.16 1.76 16 18 C -0.54 -31.49 9.11 25.60 0.23 -31.25 16 19 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 20 C 0.00 0.16 5.46 84.65 0.46 0.62 16 21 N -0.93 -58.02 13.29 21.45 0.28 -57.73 16 22 Si 0.97 44.93 29.54 68.60 2.03 46.96 16 23 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 24 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 25 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 26 C 0.49 18.28 4.78 87.52 0.42 18.70 16 27 O -0.58 -27.24 16.25 -3.01 -0.05 -27.29 16 28 C -0.06 -1.70 9.54 22.47 0.21 -1.49 16 29 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 1.02 8.10 -2.39 -0.02 1.01 16 31 H 0.08 0.96 8.09 -2.39 -0.02 0.94 16 32 H 0.18 3.08 8.06 -2.91 -0.02 3.05 16 33 H 0.14 4.47 6.91 -2.91 -0.02 4.45 16 34 H 0.01 0.62 6.98 -2.38 -0.02 0.60 16 35 H 0.07 2.78 6.05 -2.38 -0.01 2.76 16 36 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.04 1.19 5.48 -2.38 -0.01 1.18 16 38 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.04 1.35 7.59 -2.38 -0.02 1.34 16 40 H 0.12 1.63 8.07 -2.39 -0.02 1.61 16 41 H 0.07 1.59 8.00 -2.39 -0.02 1.57 16 42 H 0.12 1.75 8.07 -2.39 -0.02 1.73 16 43 H 0.12 1.45 7.92 -2.39 -0.02 1.43 16 44 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.06 1.66 7.51 -2.39 -0.02 1.64 16 46 H 0.09 3.47 8.14 -2.38 -0.02 3.45 16 47 H 0.05 2.34 7.95 -2.39 -0.02 2.32 16 48 H -0.03 -2.02 8.14 -2.39 -0.02 -2.04 16 49 H 0.00 -0.04 8.14 -2.39 -0.02 -0.05 16 50 H 0.26 15.39 8.31 -92.70 -0.77 14.62 16 51 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -79.79 402.40 1.16 -78.63 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 0.91 Total: 20.93 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: 6.30 Total: -3.34 kcal Atomic # 7 Polarization: -107.86 SS G_CDS: -8.03 Total: -115.89 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.05 Total: -27.29 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -79.79 1.16 -78.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272841590.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.324 kcal (2) G-P(sol) polarization free energy of solvation -79.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds