Wall clock time and date at job start Wed Apr 1 2020 02:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38228 * 120.41788 * 2 1 4 4 N 1.31847 * 120.76376 * 180.02562 * 3 2 1 5 5 C 1.31890 * 121.72521 * 359.97438 * 4 3 2 6 6 C 1.38177 * 120.76384 * 359.97438 * 5 4 3 7 7 C 1.50705 * 120.41460 * 179.97438 * 6 5 4 8 8 N 1.46898 * 109.47046 * 89.99766 * 7 6 5 9 9 C 1.47712 * 111.00222 * 290.12528 * 8 7 6 10 10 C 1.54409 * 107.34430 * 237.77869 * 9 8 7 11 11 C 1.55593 * 103.00757 * 337.99522 * 10 9 8 12 12 C 1.46726 * 110.99960 * 169.65047 * 8 7 6 13 13 C 1.53608 * 111.40465 * 265.43164 * 12 8 7 14 14 C 1.54703 * 101.51916 * 97.92861 * 13 12 8 15 15 N 1.46888 * 105.51896 * 24.51867 * 14 13 12 16 16 C 1.46493 * 124.37270 * 163.14112 * 15 14 13 17 17 C 1.53003 * 109.47020 * 90.00566 * 16 15 14 18 18 C 1.50701 * 109.47127 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99884 * 359.97438 * 18 17 16 20 20 C 1.37872 * 120.00250 * 180.02562 * 18 17 16 21 21 N 1.31521 * 119.99726 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00494 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46918 * 89.99858 * 22 20 18 24 24 H 1.48498 * 109.47449 * 209.99733 * 22 20 18 25 25 H 1.48497 * 109.46914 * 329.99983 * 22 20 18 26 26 C 1.34749 * 111.25189 * 343.18349 * 15 14 13 27 27 O 1.21281 * 125.12983 * 181.03465 * 26 15 14 28 28 C 1.38632 * 120.41960 * 180.24612 * 2 1 3 29 29 H 1.08999 * 109.46827 * 90.00908 * 1 2 3 30 30 H 1.09007 * 109.46719 * 210.00417 * 1 2 3 31 31 H 1.08996 * 109.47165 * 330.00329 * 1 2 3 32 32 H 1.08001 * 119.61681 * 359.97438 * 3 2 1 33 33 H 1.08002 * 119.61232 * 180.02562 * 5 4 3 34 34 H 1.08997 * 109.47143 * 329.99739 * 7 6 5 35 35 H 1.08998 * 109.46951 * 209.99583 * 7 6 5 36 36 H 1.09002 * 109.89334 * 357.26029 * 9 8 7 37 37 H 1.08997 * 109.89205 * 118.30047 * 9 8 7 38 38 H 1.09000 * 110.68194 * 96.30101 * 10 9 8 39 39 H 1.08994 * 110.68683 * 219.48538 * 10 9 8 40 40 H 1.08991 * 110.89168 * 276.34740 * 11 10 9 41 41 H 1.08997 * 111.04812 * 152.53250 * 11 10 9 42 42 H 1.09000 * 111.01395 * 215.98409 * 13 12 8 43 43 H 1.08998 * 111.02197 * 339.82848 * 13 12 8 44 44 H 1.08995 * 110.23868 * 143.52952 * 14 13 12 45 45 H 1.09001 * 110.23907 * 265.51299 * 14 13 12 46 46 H 1.09006 * 109.46817 * 210.00091 * 16 15 14 47 47 H 1.08997 * 109.47448 * 329.99954 * 16 15 14 48 48 H 1.08997 * 109.46745 * 299.99668 * 17 16 15 49 49 H 1.09001 * 109.47081 * 59.99643 * 17 16 15 50 50 H 0.97000 * 119.99904 * 180.02562 * 21 20 18 51 51 H 1.08000 * 120.78947 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.2000 -0.0005 5 6 4.2257 0.0823 -0.0005 6 6 3.5948 -1.1470 0.0005 7 6 4.4028 -2.4192 -0.0001 8 7 4.6670 -2.8321 1.3847 9 6 5.6155 -1.9091 2.0406 10 6 6.8222 -2.7485 2.5134 11 6 6.2359 -4.1871 2.5995 12 6 5.2344 -4.1844 1.4310 13 6 4.1430 -5.2431 1.6494 14 6 3.8924 -5.7313 0.2030 15 7 5.1330 -5.4444 -0.5293 16 6 5.4893 -6.0414 -1.8187 17 6 4.9579 -5.1618 -2.9522 18 6 5.3249 -5.7756 -4.2787 19 1 5.8819 -6.7003 -4.3101 20 6 4.9506 -5.1561 -5.4521 21 7 4.2728 -4.0296 -5.4138 22 14 5.4062 -5.9165 -7.0964 23 1 4.3272 -6.8399 -7.5306 24 1 5.5758 -4.8429 -8.1083 25 1 6.6775 -6.6711 -6.9575 26 6 5.9014 -4.5619 0.1388 27 8 6.9701 -4.1360 -0.2454 28 6 2.2090 -1.1955 -0.0051 29 1 -0.3633 -0.0002 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6675 2.1277 -0.0004 33 1 5.3047 0.1287 -0.0005 34 1 5.3482 -2.2489 -0.5151 35 1 3.8457 -3.2031 -0.5130 36 1 5.9463 -1.1510 1.3306 37 1 5.1374 -1.4323 2.8962 38 1 7.6305 -2.7058 1.7833 39 1 7.1665 -2.4112 3.4909 40 1 5.7265 -4.3430 3.5503 41 1 7.0127 -4.9363 2.4466 42 1 4.5068 -6.0554 2.2786 43 1 3.2438 -4.7960 2.0730 44 1 3.6897 -6.8023 0.1963 45 1 3.0587 -5.1863 -0.2398 46 1 6.5738 -6.1181 -1.8962 47 1 5.0485 -7.0355 -1.8930 48 1 3.8734 -5.0851 -2.8746 49 1 5.3987 -4.1677 -2.8778 50 1 4.0092 -3.5939 -6.2394 51 1 1.6889 -2.1419 -0.0088 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272841592.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:27 Heat of formation + Delta-G solvation = 4.465496 kcal Electronic energy + Delta-G solvation = -31486.996126 eV Core-core repulsion = 27578.799036 eV Total energy + Delta-G solvation = -3908.197090 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.36471 -40.10466 -37.55679 -36.07500 -34.08036 -33.56273 -33.50643 -31.84113 -30.61745 -29.16037 -27.80038 -27.30086 -25.85490 -25.13288 -23.63206 -22.96642 -22.07826 -21.33169 -20.68538 -20.16844 -18.57426 -17.01089 -16.91079 -16.67922 -16.39257 -15.93135 -15.34359 -15.12485 -14.64715 -14.56869 -14.32251 -14.18511 -13.58320 -13.45224 -13.27202 -13.04738 -12.94005 -12.92543 -12.86093 -12.70653 -12.61387 -12.43692 -12.36367 -12.11453 -11.87831 -11.52053 -11.41575 -11.25447 -10.99803 -10.94382 -10.77348 -10.76494 -10.67907 -10.04800 -9.89867 -9.63399 -9.54784 -9.36828 -9.25023 -8.80855 -8.41461 -8.30313 -8.07525 -6.06011 -4.09787 1.12463 1.35609 2.82930 3.28526 3.34894 3.37792 3.46798 3.70128 4.04970 4.33184 4.37485 4.42558 4.51851 4.68278 4.74627 4.79476 4.87338 4.99171 5.04491 5.07715 5.10024 5.22856 5.24710 5.30325 5.35791 5.48581 5.54375 5.55462 5.66370 5.68312 5.75170 5.76649 5.82415 5.87948 5.89968 5.94447 5.95918 6.03499 6.07910 6.22464 6.25585 6.36885 6.40060 6.74059 6.75251 6.86539 6.89483 6.93851 7.42692 7.60428 7.77725 7.92191 8.01749 8.28839 8.57120 8.96431 9.54707 11.05139 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.008165 B = 0.004206 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3428.255626 B = 6655.894253 C = 8793.078099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.140 4.140 3 C 0.091 3.909 4 N -0.482 5.482 5 C 0.098 3.902 6 C -0.109 4.109 7 C 0.079 3.921 8 N -0.489 5.489 9 C 0.039 3.961 10 C -0.140 4.140 11 C -0.104 4.104 12 C 0.064 3.936 13 C -0.116 4.116 14 C 0.098 3.902 15 N -0.609 5.609 16 C 0.127 3.873 17 C 0.014 3.986 18 C -0.524 4.524 19 H 0.057 0.943 20 C 0.061 3.939 21 N -0.891 5.891 22 Si 0.894 3.106 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.273 1.273 26 C 0.502 3.498 27 O -0.526 6.526 28 C -0.054 4.054 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.061 0.939 35 H 0.094 0.906 36 H 0.060 0.940 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.098 0.902 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.069 0.931 47 H 0.066 0.934 48 H 0.016 0.984 49 H 0.019 0.981 50 H 0.261 0.739 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.887 3.392 18.929 20.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.141 4.141 3 C -0.067 4.067 4 N -0.190 5.190 5 C -0.059 4.059 6 C -0.112 4.112 7 C -0.049 4.049 8 N -0.213 5.213 9 C -0.089 4.089 10 C -0.178 4.178 11 C -0.142 4.142 12 C -0.029 4.029 13 C -0.154 4.154 14 C -0.025 4.025 15 N -0.342 5.342 16 C 0.007 3.993 17 C -0.023 4.023 18 C -0.562 4.562 19 H 0.075 0.925 20 C -0.141 4.141 21 N -0.530 5.530 22 Si 0.721 3.279 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.198 1.198 26 C 0.287 3.713 27 O -0.402 6.402 28 C -0.081 4.081 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.168 0.832 33 H 0.167 0.833 34 H 0.080 0.920 35 H 0.112 0.888 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.102 0.898 43 H 0.117 0.883 44 H 0.096 0.904 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.084 0.916 48 H 0.034 0.966 49 H 0.037 0.963 50 H 0.071 0.929 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.403 4.518 18.770 20.047 hybrid contribution 0.402 -1.193 -1.669 2.090 sum -5.001 3.325 17.101 18.125 Atomic orbital electron populations 1.20704 0.90304 1.02865 1.02655 1.20912 0.97511 0.94132 1.01589 1.22596 0.90004 0.97319 0.96783 1.67656 1.08343 1.31073 1.11897 1.22634 1.00030 0.87314 0.95928 1.20647 0.94560 0.95797 1.00165 1.21322 0.99457 0.94756 0.89320 1.63744 1.41826 0.99975 1.15762 1.22995 0.91544 0.95227 0.99099 1.22889 0.98405 0.94586 1.01962 1.22498 0.97165 0.97858 0.96687 1.22088 0.94866 0.91115 0.94804 1.22535 0.99509 0.97123 0.96243 1.22157 0.87774 1.01331 0.91275 1.48702 1.19734 1.44000 1.21785 1.21836 1.00395 0.96764 0.80353 1.19379 0.96315 0.95313 0.91340 1.21064 1.35926 1.08583 0.90655 0.92516 1.24985 0.95010 0.94832 0.99297 1.69969 1.38289 1.17084 1.27648 0.86567 0.78908 0.78880 0.83513 1.20599 1.21160 1.19778 1.20840 0.84804 0.79278 0.86395 1.90695 1.21345 1.55662 1.72479 1.21351 0.93258 0.98207 0.95240 0.90858 0.91321 0.91394 0.83175 0.83310 0.92036 0.88798 0.92209 0.90341 0.90228 0.90777 0.89958 0.90501 0.89787 0.88307 0.90447 0.91134 0.91212 0.91567 0.96560 0.96266 0.92923 0.84840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 10.04 36.01 0.36 -0.56 16 2 C -0.14 -1.65 5.90 -104.48 -0.62 -2.27 16 3 C 0.09 1.14 10.86 -17.55 -0.19 0.95 16 4 N -0.48 -7.14 10.36 -13.25 -0.14 -7.28 16 5 C 0.10 1.45 9.91 -17.55 -0.17 1.28 16 6 C -0.11 -1.60 5.12 -104.48 -0.53 -2.13 16 7 C 0.08 1.24 3.84 -4.97 -0.02 1.22 16 8 N -0.49 -6.47 4.81 -219.62 -1.06 -7.53 16 9 C 0.04 0.47 6.30 -2.64 -0.02 0.46 16 10 C -0.14 -1.62 6.67 -24.61 -0.16 -1.78 16 11 C -0.10 -1.17 5.81 -24.88 -0.14 -1.32 16 12 C 0.06 0.86 0.72 -132.29 -0.10 0.76 16 13 C -0.12 -1.23 6.41 -25.52 -0.16 -1.39 16 14 C 0.10 1.27 6.66 -2.93 -0.02 1.25 16 15 N -0.61 -10.61 2.69 -172.53 -0.46 -11.07 16 16 C 0.13 2.62 5.88 -4.04 -0.02 2.59 16 17 C 0.01 0.37 5.30 -27.88 -0.15 0.22 16 18 C -0.52 -14.67 9.11 -34.44 -0.31 -14.99 16 19 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 20 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 21 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 22 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 26 C 0.50 8.92 4.78 -11.22 -0.05 8.86 16 27 O -0.53 -11.38 16.27 5.56 0.09 -11.29 16 28 C -0.05 -0.72 9.55 -39.28 -0.37 -1.09 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.53 8.10 -51.92 -0.42 0.11 16 31 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 32 H 0.15 1.46 8.06 -52.49 -0.42 1.03 16 33 H 0.15 2.06 6.91 -52.49 -0.36 1.70 16 34 H 0.06 1.15 6.98 -51.93 -0.36 0.79 16 35 H 0.09 1.60 6.05 -51.93 -0.31 1.29 16 36 H 0.06 0.77 5.48 -51.93 -0.28 0.49 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.08 1.10 7.60 -51.93 -0.39 0.70 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.75 8.07 -51.93 -0.42 0.33 16 41 H 0.08 0.91 8.00 -51.93 -0.42 0.50 16 42 H 0.08 0.74 7.92 -51.93 -0.41 0.33 16 43 H 0.10 0.92 8.07 -51.93 -0.42 0.51 16 44 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.07 0.94 7.51 -51.93 -0.39 0.55 16 46 H 0.07 1.53 7.95 -51.93 -0.41 1.12 16 47 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 51 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 402.45 15.07 6.06 6.06 Total: -1.00 -33.51 402.45 -10.95 -44.46 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -8.37 Total: 2.36 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -2.79 Total: -6.31 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: -0.92 Total: -51.89 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.09 Total: -11.29 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.51 -10.95 -44.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272841592.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.923 kcal (2) G-P(sol) polarization free energy of solvation -33.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds