Wall clock time and date at job start Wed Apr 1 2020 02:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38228 * 120.41788 * 2 1 4 4 N 1.31847 * 120.76376 * 180.02562 * 3 2 1 5 5 C 1.31890 * 121.72521 * 359.97438 * 4 3 2 6 6 C 1.38177 * 120.76384 * 359.97438 * 5 4 3 7 7 C 1.50705 * 120.41460 * 179.97438 * 6 5 4 8 8 N 1.46898 * 109.47046 * 89.99766 * 7 6 5 9 9 C 1.47712 * 111.00222 * 290.12528 * 8 7 6 10 10 C 1.54409 * 107.34430 * 237.77869 * 9 8 7 11 11 C 1.55593 * 103.00757 * 337.99522 * 10 9 8 12 12 C 1.46726 * 110.99960 * 169.65047 * 8 7 6 13 13 C 1.53608 * 111.40465 * 265.43164 * 12 8 7 14 14 C 1.54703 * 101.51916 * 97.92861 * 13 12 8 15 15 N 1.46888 * 105.51896 * 24.51867 * 14 13 12 16 16 C 1.46493 * 124.37270 * 163.14112 * 15 14 13 17 17 C 1.53003 * 109.47020 * 90.00566 * 16 15 14 18 18 C 1.50701 * 109.47127 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99884 * 359.97438 * 18 17 16 20 20 C 1.37872 * 120.00250 * 180.02562 * 18 17 16 21 21 N 1.31521 * 119.99726 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00494 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46918 * 89.99858 * 22 20 18 24 24 H 1.48498 * 109.47449 * 209.99733 * 22 20 18 25 25 H 1.48497 * 109.46914 * 329.99983 * 22 20 18 26 26 C 1.34749 * 111.25189 * 343.18349 * 15 14 13 27 27 O 1.21281 * 125.12983 * 181.03465 * 26 15 14 28 28 C 1.38632 * 120.41960 * 180.24612 * 2 1 3 29 29 H 1.08999 * 109.46827 * 90.00908 * 1 2 3 30 30 H 1.09007 * 109.46719 * 210.00417 * 1 2 3 31 31 H 1.08996 * 109.47165 * 330.00329 * 1 2 3 32 32 H 1.08001 * 119.61681 * 359.97438 * 3 2 1 33 33 H 1.08002 * 119.61232 * 180.02562 * 5 4 3 34 34 H 1.08997 * 109.47143 * 329.99739 * 7 6 5 35 35 H 1.08998 * 109.46951 * 209.99583 * 7 6 5 36 36 H 1.09002 * 109.89334 * 357.26029 * 9 8 7 37 37 H 1.08997 * 109.89205 * 118.30047 * 9 8 7 38 38 H 1.09000 * 110.68194 * 96.30101 * 10 9 8 39 39 H 1.08994 * 110.68683 * 219.48538 * 10 9 8 40 40 H 1.08991 * 110.89168 * 276.34740 * 11 10 9 41 41 H 1.08997 * 111.04812 * 152.53250 * 11 10 9 42 42 H 1.09000 * 111.01395 * 215.98409 * 13 12 8 43 43 H 1.08998 * 111.02197 * 339.82848 * 13 12 8 44 44 H 1.08995 * 110.23868 * 143.52952 * 14 13 12 45 45 H 1.09001 * 110.23907 * 265.51299 * 14 13 12 46 46 H 1.09006 * 109.46817 * 210.00091 * 16 15 14 47 47 H 1.08997 * 109.47448 * 329.99954 * 16 15 14 48 48 H 1.08997 * 109.46745 * 299.99668 * 17 16 15 49 49 H 1.09001 * 109.47081 * 59.99643 * 17 16 15 50 50 H 0.97000 * 119.99904 * 180.02562 * 21 20 18 51 51 H 1.08000 * 120.78947 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.2000 -0.0005 5 6 4.2257 0.0823 -0.0005 6 6 3.5948 -1.1470 0.0005 7 6 4.4028 -2.4192 -0.0001 8 7 4.6670 -2.8321 1.3847 9 6 5.6155 -1.9091 2.0406 10 6 6.8222 -2.7485 2.5134 11 6 6.2359 -4.1871 2.5995 12 6 5.2344 -4.1844 1.4310 13 6 4.1430 -5.2431 1.6494 14 6 3.8924 -5.7313 0.2030 15 7 5.1330 -5.4444 -0.5293 16 6 5.4893 -6.0414 -1.8187 17 6 4.9579 -5.1618 -2.9522 18 6 5.3249 -5.7756 -4.2787 19 1 5.8819 -6.7003 -4.3101 20 6 4.9506 -5.1561 -5.4521 21 7 4.2728 -4.0296 -5.4138 22 14 5.4062 -5.9165 -7.0964 23 1 4.3272 -6.8399 -7.5306 24 1 5.5758 -4.8429 -8.1083 25 1 6.6775 -6.6711 -6.9575 26 6 5.9014 -4.5619 0.1388 27 8 6.9701 -4.1360 -0.2454 28 6 2.2090 -1.1955 -0.0051 29 1 -0.3633 -0.0002 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6675 2.1277 -0.0004 33 1 5.3047 0.1287 -0.0005 34 1 5.3482 -2.2489 -0.5151 35 1 3.8457 -3.2031 -0.5130 36 1 5.9463 -1.1510 1.3306 37 1 5.1374 -1.4323 2.8962 38 1 7.6305 -2.7058 1.7833 39 1 7.1665 -2.4112 3.4909 40 1 5.7265 -4.3430 3.5503 41 1 7.0127 -4.9363 2.4466 42 1 4.5068 -6.0554 2.2786 43 1 3.2438 -4.7960 2.0730 44 1 3.6897 -6.8023 0.1963 45 1 3.0587 -5.1863 -0.2398 46 1 6.5738 -6.1181 -1.8962 47 1 5.0485 -7.0355 -1.8930 48 1 3.8734 -5.0851 -2.8746 49 1 5.3987 -4.1677 -2.8778 50 1 4.0092 -3.5939 -6.2394 51 1 1.6889 -2.1419 -0.0088 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272841592.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:26 Heat of formation + Delta-G solvation = -17.273667 kcal Electronic energy + Delta-G solvation = -31487.938807 eV Core-core repulsion = 27578.799036 eV Total energy + Delta-G solvation = -3909.139771 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.56513 -41.18781 -38.81565 -37.53107 -35.68704 -34.97069 -34.52835 -33.48847 -31.64821 -30.81372 -28.92196 -28.17578 -27.01709 -26.97118 -24.77134 -24.17239 -23.57137 -22.46775 -21.81465 -21.49199 -19.89289 -18.73897 -18.07358 -17.94467 -17.66196 -17.28779 -16.73517 -16.51908 -16.25313 -15.83269 -15.54668 -15.16609 -14.93734 -14.63966 -14.51535 -14.43878 -14.19833 -14.13655 -14.00572 -13.91630 -13.87758 -13.56033 -13.46824 -13.17622 -13.13122 -12.97038 -12.87531 -12.65146 -12.48307 -12.29969 -12.08137 -12.01516 -11.85701 -11.71907 -11.65867 -11.44135 -10.91236 -10.63583 -10.62589 -10.45598 -9.84303 -9.62503 -9.49467 -8.27264 -6.40362 0.06449 0.28953 1.35481 1.38057 1.45211 1.49200 2.07635 2.37871 2.60455 2.94948 3.06440 3.26758 3.30239 3.49348 3.60624 3.70351 3.77212 3.90605 3.99689 4.01815 4.08530 4.10605 4.20016 4.27632 4.30073 4.36534 4.46195 4.55698 4.61040 4.66487 4.69849 4.77442 4.82117 4.82380 4.85513 4.89124 4.92075 4.99714 5.12036 5.13812 5.19466 5.24035 5.28843 5.30304 5.33285 5.41054 5.55623 5.70272 5.73437 5.77832 5.80481 6.11127 6.23582 6.74729 6.94598 7.14859 7.29907 8.84399 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.008165 B = 0.004206 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3428.255626 B = 6655.894253 C = 8793.078099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.132 4.132 3 C 0.084 3.916 4 N -0.502 5.502 5 C 0.081 3.919 6 C -0.122 4.122 7 C 0.097 3.903 8 N -0.473 5.473 9 C 0.036 3.964 10 C -0.138 4.138 11 C -0.097 4.097 12 C 0.062 3.938 13 C -0.098 4.098 14 C 0.089 3.911 15 N -0.615 5.615 16 C 0.141 3.859 17 C 0.030 3.970 18 C -0.546 4.546 19 H 0.066 0.934 20 C 0.003 3.997 21 N -0.931 5.931 22 Si 0.968 3.032 23 H -0.264 1.264 24 H -0.285 1.285 25 H -0.264 1.264 26 C 0.490 3.510 27 O -0.578 6.578 28 C -0.065 4.065 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.182 0.818 33 H 0.142 0.858 34 H 0.014 0.986 35 H 0.075 0.925 36 H 0.041 0.959 37 H 0.101 0.899 38 H 0.045 0.955 39 H 0.105 0.895 40 H 0.121 0.879 41 H 0.071 0.929 42 H 0.116 0.884 43 H 0.122 0.878 44 H 0.104 0.896 45 H 0.064 0.936 46 H 0.050 0.950 47 H 0.093 0.907 48 H -0.001 1.001 49 H -0.032 1.032 50 H 0.263 0.737 51 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.129 2.141 20.984 22.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.133 4.133 3 C -0.073 4.073 4 N -0.210 5.210 5 C -0.076 4.076 6 C -0.125 4.125 7 C -0.031 4.031 8 N -0.197 5.197 9 C -0.092 4.092 10 C -0.176 4.176 11 C -0.136 4.136 12 C -0.031 4.031 13 C -0.136 4.136 14 C -0.033 4.033 15 N -0.347 5.347 16 C 0.019 3.981 17 C -0.008 4.008 18 C -0.584 4.584 19 H 0.084 0.916 20 C -0.195 4.195 21 N -0.571 5.571 22 Si 0.792 3.208 23 H -0.189 1.189 24 H -0.211 1.211 25 H -0.188 1.188 26 C 0.277 3.723 27 O -0.458 6.458 28 C -0.091 4.091 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.109 0.891 32 H 0.199 0.801 33 H 0.159 0.841 34 H 0.033 0.967 35 H 0.093 0.907 36 H 0.060 0.940 37 H 0.119 0.881 38 H 0.064 0.936 39 H 0.124 0.876 40 H 0.139 0.861 41 H 0.089 0.911 42 H 0.134 0.866 43 H 0.140 0.860 44 H 0.123 0.877 45 H 0.082 0.918 46 H 0.068 0.932 47 H 0.111 0.889 48 H 0.018 0.982 49 H -0.013 1.013 50 H 0.072 0.928 51 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -7.670 3.242 20.862 22.463 hybrid contribution 1.070 -0.716 -2.338 2.669 sum -6.601 2.526 18.524 19.826 Atomic orbital electron populations 1.20788 0.87420 1.04636 1.03379 1.21294 0.99459 0.93110 0.99487 1.23193 0.89377 0.99041 0.95735 1.67658 1.09746 1.30946 1.12664 1.22568 1.00002 0.87745 0.97246 1.20592 0.95399 0.94997 1.01473 1.20976 0.97033 0.94878 0.90210 1.63931 1.41775 1.00299 1.13669 1.23092 0.91951 0.94934 0.99182 1.22865 0.97059 0.95184 1.02509 1.22585 0.96645 0.97133 0.97196 1.22288 0.96215 0.91751 0.92809 1.22626 0.99307 0.96815 0.94859 1.22496 0.85357 1.03112 0.92292 1.48783 1.21432 1.43765 1.20760 1.21384 0.99089 0.96922 0.80674 1.19146 0.94796 0.93650 0.93242 1.21535 1.35967 1.09075 0.91819 0.91584 1.25986 0.94693 0.95184 1.03656 1.70121 1.39467 1.18651 1.28813 0.85408 0.79239 0.78104 0.78087 1.18894 1.21081 1.18802 1.21802 0.84209 0.78328 0.87975 1.90651 1.23884 1.57154 1.74081 1.21590 0.92601 0.99609 0.95291 0.90442 0.90138 0.89125 0.80098 0.84063 0.96736 0.90696 0.94014 0.88127 0.93617 0.87639 0.86080 0.91071 0.86613 0.86017 0.87734 0.91807 0.93169 0.88895 0.98230 1.01320 0.92792 0.83605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.49 10.04 71.24 0.72 -0.78 16 2 C -0.13 -2.94 5.90 -19.77 -0.12 -3.05 16 3 C 0.08 2.02 10.86 84.69 0.92 2.94 16 4 N -0.50 -15.19 10.36 -195.85 -2.03 -17.22 16 5 C 0.08 2.56 9.91 84.67 0.84 3.40 16 6 C -0.12 -3.78 5.12 -19.77 -0.10 -3.88 16 7 C 0.10 3.31 3.84 85.56 0.33 3.64 16 8 N -0.47 -12.59 4.81 -848.75 -4.08 -16.67 16 9 C 0.04 0.88 6.30 86.63 0.55 1.42 16 10 C -0.14 -3.14 6.67 31.97 0.21 -2.93 16 11 C -0.10 -2.01 5.81 31.79 0.18 -1.83 16 12 C 0.06 1.61 0.72 3.18 0.00 1.62 16 13 C -0.10 -1.78 6.41 31.38 0.20 -1.58 16 14 C 0.09 2.19 6.66 86.89 0.58 2.77 16 15 N -0.62 -22.07 2.69 -818.15 -2.20 -24.27 16 16 C 0.14 6.07 5.88 86.38 0.51 6.58 16 17 C 0.03 1.62 5.30 29.85 0.16 1.78 16 18 C -0.55 -31.57 9.11 25.60 0.23 -31.34 16 19 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 20 C 0.00 0.18 5.46 84.65 0.46 0.64 16 21 N -0.93 -58.00 13.29 21.45 0.28 -57.71 16 22 Si 0.97 44.91 29.54 68.60 2.03 46.93 16 23 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 24 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 25 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 26 C 0.49 18.29 4.78 87.52 0.42 18.70 16 27 O -0.58 -27.26 16.27 -3.03 -0.05 -27.31 16 28 C -0.06 -1.70 9.55 22.47 0.21 -1.49 16 29 H 0.08 1.09 8.14 -2.39 -0.02 1.08 16 30 H 0.08 0.98 8.10 -2.38 -0.02 0.96 16 31 H 0.09 0.91 8.09 -2.39 -0.02 0.89 16 32 H 0.18 3.08 8.06 -2.91 -0.02 3.05 16 33 H 0.14 4.47 6.91 -2.91 -0.02 4.45 16 34 H 0.01 0.62 6.98 -2.39 -0.02 0.60 16 35 H 0.07 2.78 6.05 -2.39 -0.01 2.76 16 36 H 0.04 1.18 5.48 -2.39 -0.01 1.17 16 37 H 0.10 2.06 8.14 -2.39 -0.02 2.05 16 38 H 0.04 1.35 7.60 -2.39 -0.02 1.33 16 39 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.12 1.63 8.07 -2.39 -0.02 1.61 16 41 H 0.07 1.59 8.00 -2.39 -0.02 1.57 16 42 H 0.12 1.45 7.92 -2.39 -0.02 1.43 16 43 H 0.12 1.75 8.07 -2.39 -0.02 1.73 16 44 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.06 1.66 7.51 -2.39 -0.02 1.64 16 46 H 0.05 2.33 7.95 -2.38 -0.02 2.31 16 47 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 48 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 49 H -0.03 -2.03 8.14 -2.39 -0.02 -2.05 16 50 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 51 H 0.15 3.37 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -79.76 402.45 1.16 -78.60 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 0.91 Total: 21.02 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: 6.30 Total: -3.38 kcal Atomic # 7 Polarization: -107.84 SS G_CDS: -8.03 Total: -115.87 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.05 Total: -27.31 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -79.76 1.16 -78.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272841592.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.326 kcal (2) G-P(sol) polarization free energy of solvation -79.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds