Wall clock time and date at job start Wed Apr 1 2020 02:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38220 * 119.62200 * 2 1 4 4 C 1.38625 * 119.16772 * 180.02562 * 3 2 1 5 5 C 1.38682 * 118.41677 * 359.97438 * 4 3 2 6 6 C 1.38185 * 119.16016 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.61458 * 179.97438 * 6 5 4 8 8 N 1.46895 * 109.47483 * 95.00006 * 7 6 5 9 9 C 1.47553 * 111.00197 * 69.86835 * 8 7 6 10 10 C 1.54584 * 107.28775 * 123.20138 * 9 8 7 11 11 C 1.53698 * 102.86091 * 20.98587 * 10 9 8 12 12 C 1.53212 * 111.53336 * 205.83057 * 11 10 9 13 13 C 1.54796 * 101.39377 * 261.15451 * 12 11 10 14 14 N 1.46930 * 105.53968 * 335.82566 * 13 12 11 15 15 C 1.46500 * 124.37937 * 196.74768 * 14 13 12 16 16 C 1.52999 * 109.47092 * 270.02706 * 15 14 13 17 17 C 1.50700 * 109.47008 * 180.02562 * 16 15 14 18 18 H 1.07991 * 120.00234 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99655 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00596 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99932 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46956 * 89.99927 * 21 19 17 23 23 H 1.48500 * 109.47156 * 210.00329 * 21 19 17 24 24 H 1.48504 * 109.47038 * 330.00106 * 21 19 17 25 25 C 1.34890 * 111.24396 * 16.74600 * 14 13 12 26 26 O 1.21279 * 125.22028 * 178.75765 * 25 14 13 27 27 C 1.48130 * 111.00297 * 190.81841 * 8 7 6 28 28 N 1.31860 * 119.61625 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.47183 * 270.02361 * 1 2 3 30 30 H 1.08999 * 109.46631 * 30.02347 * 1 2 3 31 31 H 1.09004 * 109.47134 * 150.02195 * 1 2 3 32 32 H 1.08004 * 120.41620 * 359.97438 * 3 2 1 33 33 H 1.07993 * 120.79452 * 179.97438 * 4 3 2 34 34 H 1.07995 * 120.41697 * 180.27369 * 5 4 3 35 35 H 1.09003 * 109.47222 * 215.00260 * 7 6 5 36 36 H 1.09006 * 109.47164 * 335.00093 * 7 6 5 37 37 H 1.08991 * 109.88479 * 242.62879 * 9 8 7 38 38 H 1.09004 * 109.87522 * 3.78964 * 9 8 7 39 39 H 1.09005 * 110.72870 * 139.32136 * 10 9 8 40 40 H 1.08994 * 110.73720 * 262.63430 * 10 9 8 41 41 H 1.09000 * 111.03849 * 19.18113 * 12 11 10 42 42 H 1.08994 * 111.04168 * 143.12228 * 12 11 10 43 43 H 1.08999 * 110.23560 * 216.81369 * 13 12 11 44 44 H 1.08999 * 110.31018 * 94.88073 * 13 12 11 45 45 H 1.08997 * 109.47126 * 30.02361 * 15 14 13 46 46 H 1.09004 * 109.47129 * 150.02545 * 15 14 13 47 47 H 1.09006 * 109.47036 * 299.99934 * 16 15 14 48 48 H 1.08994 * 109.47561 * 59.99441 * 16 15 14 49 49 H 0.96993 * 120.00317 * 180.02562 * 20 19 17 50 50 H 1.08997 * 110.39383 * 333.88059 * 27 8 7 51 51 H 1.09001 * 110.39581 * 96.28221 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1906 -0.0005 5 6 4.2267 -0.0344 -0.0005 6 6 3.4766 -1.1949 -0.0005 7 6 4.1726 -2.5315 -0.0011 8 7 4.2922 -3.0219 1.3784 9 6 2.9739 -3.4035 1.9202 10 6 3.0703 -4.8807 2.3655 11 6 4.5833 -5.0872 2.5404 12 6 4.9752 -6.5569 2.3562 13 6 5.0748 -7.0332 3.8257 14 7 5.3403 -5.8226 4.6148 15 6 5.8516 -5.8256 5.9877 16 6 4.6781 -5.8589 6.9688 17 6 5.2041 -5.8614 8.3811 18 1 6.2688 -5.8416 8.5608 19 6 4.3259 -5.8889 9.4437 20 7 3.0293 -5.9135 9.2249 21 14 4.9778 -5.8926 11.1943 22 1 5.1228 -4.4939 11.6714 23 1 4.0285 -6.6201 12.0744 24 1 6.3005 -6.5669 11.2285 25 6 5.0524 -4.7080 3.9117 26 8 5.1572 -3.5730 4.3261 27 6 5.1911 -4.1972 1.4480 28 7 2.1587 -1.1463 0.0005 29 1 -0.3634 0.0004 1.0277 30 1 -0.3632 0.8898 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6508 2.1373 -0.0004 33 1 4.1366 2.1138 -0.0010 34 1 5.3056 -0.0806 0.0035 35 1 3.5936 -3.2424 -0.5905 36 1 5.1664 -2.4235 -0.4357 37 1 2.7282 -2.7739 2.7753 38 1 2.2114 -3.2981 1.1484 39 1 2.5482 -5.0338 3.3101 40 1 2.6769 -5.5427 1.5942 41 1 4.2004 -7.1041 1.8192 42 1 5.9365 -6.6451 1.8502 43 1 5.8945 -7.7430 3.9372 44 1 4.1362 -7.4897 4.1399 45 1 6.4778 -6.7046 6.1402 46 1 6.4418 -4.9250 6.1575 47 1 4.0518 -4.9799 6.8163 48 1 4.0879 -6.7594 6.7989 49 1 2.4116 -5.9325 9.9724 50 1 5.2039 -4.7227 0.4931 51 1 6.1989 -3.8888 1.7263 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272944732.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:48 Heat of formation + Delta-G solvation = 6.126406 kcal Electronic energy + Delta-G solvation = -30103.442332 eV Core-core repulsion = 26195.317264 eV Total energy + Delta-G solvation = -3908.125068 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.97274 -40.35077 -37.82352 -35.89158 -34.39379 -33.35683 -32.86380 -31.99342 -30.42614 -29.14786 -28.32625 -27.71839 -26.02594 -25.01926 -23.32541 -22.49921 -22.29374 -21.87398 -20.66543 -20.23987 -18.50865 -16.69547 -16.62481 -16.50941 -16.14029 -15.69629 -15.53659 -15.38647 -15.17817 -14.52257 -14.42911 -14.19588 -13.73219 -13.65511 -13.45139 -13.18980 -12.98574 -12.75162 -12.66727 -12.56115 -12.43075 -12.35983 -12.28302 -12.08396 -11.92061 -11.81006 -11.52345 -11.27440 -10.99269 -10.92131 -10.83948 -10.68966 -10.59510 -9.96532 -9.94925 -9.81420 -9.55328 -9.26683 -8.98680 -8.97107 -8.34650 -8.26338 -7.92448 -5.99754 -4.03110 0.94275 1.14265 3.10360 3.33527 3.39108 3.41695 3.47503 3.62174 3.95557 4.09606 4.43732 4.45638 4.47664 4.52796 4.56729 4.65351 4.89722 4.91102 4.93383 5.13849 5.22384 5.22683 5.28965 5.31668 5.35250 5.36341 5.40007 5.42853 5.51261 5.56554 5.59230 5.73215 5.75284 5.82308 5.87226 5.90656 5.97840 6.01931 6.06500 6.12374 6.13915 6.32711 6.51010 6.55747 6.85863 6.93023 7.03445 7.10235 7.57209 7.70970 7.88522 7.90991 8.00852 8.37204 8.81507 9.03997 9.60746 11.11686 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013059 B = 0.002446 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.663886 B =11444.483385 C =12511.758870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.128 3.872 3 C -0.177 4.177 4 C -0.073 4.073 5 C -0.158 4.158 6 C 0.146 3.854 7 C 0.099 3.901 8 N -0.513 5.513 9 C 0.048 3.952 10 C -0.117 4.117 11 C -0.108 4.108 12 C -0.120 4.120 13 C 0.104 3.896 14 N -0.617 5.617 15 C 0.130 3.870 16 C 0.012 3.988 17 C -0.522 4.522 18 H 0.057 0.943 19 C 0.059 3.941 20 N -0.893 5.893 21 Si 0.894 3.106 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.273 1.273 25 C 0.530 3.470 26 O -0.510 6.510 27 C 0.073 3.927 28 N -0.479 5.479 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.053 0.947 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.069 0.931 47 H 0.020 0.980 48 H 0.016 0.984 49 H 0.261 0.739 50 H 0.055 0.945 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.472 6.236 -25.554 26.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.010 4.010 3 C -0.197 4.197 4 C -0.099 4.099 5 C -0.179 4.179 6 C 0.007 3.993 7 C -0.030 4.030 8 N -0.237 5.237 9 C -0.080 4.080 10 C -0.156 4.156 11 C -0.112 4.112 12 C -0.158 4.158 13 C -0.020 4.020 14 N -0.351 5.351 15 C 0.010 3.990 16 C -0.026 4.026 17 C -0.560 4.560 18 H 0.075 0.925 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.722 3.278 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.198 1.198 25 C 0.315 3.685 26 O -0.385 6.385 27 C -0.055 4.055 28 N -0.190 5.190 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.149 0.851 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.071 0.929 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.106 0.894 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.082 0.918 46 H 0.087 0.913 47 H 0.039 0.961 48 H 0.034 0.966 49 H 0.070 0.930 50 H 0.073 0.927 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.806 6.466 -24.854 25.694 hybrid contribution 0.395 0.125 0.728 0.838 sum -0.411 6.591 -24.126 25.013 Atomic orbital electron populations 1.20709 0.88936 1.03203 1.03236 1.21243 0.96903 0.88273 0.94614 1.21914 0.95025 0.99188 1.03606 1.21568 0.94465 0.98304 0.95553 1.21906 1.01461 0.92728 1.01783 1.20997 0.89129 0.95178 0.93955 1.21133 0.99212 0.91796 0.90810 1.63628 1.10770 1.32111 1.17212 1.22911 0.90200 0.94407 1.00449 1.22556 0.93122 0.97375 1.02570 1.21540 0.97636 0.96293 0.95735 1.22482 1.02742 0.93720 0.96832 1.22050 1.01821 0.88362 0.89776 1.48688 1.65008 1.06105 1.15261 1.21764 0.98293 1.01235 0.77744 1.19399 0.92943 0.97620 0.92620 1.21095 0.93004 1.51147 0.90793 0.92506 1.25004 0.94827 0.95150 0.99307 1.69973 1.01403 1.50427 1.31371 0.86560 0.78674 0.78161 0.84404 1.20581 1.21215 1.19821 1.19871 0.77461 0.84852 0.86298 1.90721 1.52631 1.20681 1.74445 1.22685 0.97602 0.89094 0.96097 1.67274 1.09484 1.29496 1.12730 0.90289 0.90901 0.90561 0.85070 0.84912 0.84796 0.92879 0.89388 0.90532 0.90988 0.90065 0.90491 0.89370 0.90005 0.90721 0.91201 0.91785 0.91251 0.96142 0.96558 0.92962 0.92673 0.89807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.82 10.17 36.01 0.37 -0.45 16 2 C 0.13 1.37 6.78 -82.59 -0.56 0.81 16 3 C -0.18 -1.66 9.74 -39.44 -0.38 -2.04 16 4 C -0.07 -0.68 10.18 -39.27 -0.40 -1.08 16 5 C -0.16 -1.67 9.72 -39.44 -0.38 -2.05 16 6 C 0.15 1.73 5.94 -82.59 -0.49 1.24 16 7 C 0.10 1.07 4.87 -4.98 -0.02 1.05 16 8 N -0.51 -6.94 5.15 -233.13 -1.20 -8.14 16 9 C 0.05 0.68 6.28 -2.63 -0.02 0.66 16 10 C -0.12 -1.56 5.94 -25.54 -0.15 -1.71 16 11 C -0.11 -1.48 0.67 -155.38 -0.10 -1.58 16 12 C -0.12 -1.26 6.26 -25.68 -0.16 -1.42 16 13 C 0.10 1.41 7.37 -2.86 -0.02 1.39 16 14 N -0.62 -11.47 2.95 -172.57 -0.51 -11.98 16 15 C 0.13 2.82 5.88 -4.04 -0.02 2.80 16 16 C 0.01 0.33 5.30 -27.88 -0.15 0.18 16 17 C -0.52 -15.06 9.11 -34.44 -0.31 -15.38 16 18 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -27.45 13.29 55.43 0.74 -26.71 16 21 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 24 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 25 C 0.53 10.13 6.73 -11.36 -0.08 10.06 16 26 O -0.51 -12.05 17.51 5.56 0.10 -11.95 16 27 C 0.07 0.89 5.53 -2.91 -0.02 0.87 16 28 N -0.48 -5.98 8.98 -5.74 -0.05 -6.03 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 33 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 35 H 0.05 0.54 7.96 -51.93 -0.41 0.13 16 36 H 0.09 0.77 7.97 -51.93 -0.41 0.36 16 37 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 38 H 0.07 0.96 6.45 -51.93 -0.33 0.63 16 39 H 0.08 1.24 8.00 -51.93 -0.42 0.83 16 40 H 0.08 0.81 7.74 -51.93 -0.40 0.41 16 41 H 0.09 0.73 7.62 -51.93 -0.40 0.33 16 42 H 0.08 0.72 7.97 -51.93 -0.41 0.31 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 46 H 0.07 1.59 7.96 -51.93 -0.41 1.18 16 47 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 48 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 50 H 0.06 0.51 7.70 -51.93 -0.40 0.11 16 51 H 0.08 1.10 8.01 -51.93 -0.42 0.68 16 LS Contribution 411.50 15.07 6.20 6.20 Total: -1.00 -36.00 411.50 -11.38 -47.38 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -8.63 Total: -0.76 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -3.01 Total: -5.03 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: -1.03 Total: -52.86 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.10 Total: -11.95 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -36.00 -11.38 -47.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272944732.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.510 kcal (2) G-P(sol) polarization free energy of solvation -35.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds