Wall clock time and date at job start Wed Apr 1 2020 02:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38220 * 119.62200 * 2 1 4 4 C 1.38625 * 119.16772 * 180.02562 * 3 2 1 5 5 C 1.38682 * 118.41677 * 359.97438 * 4 3 2 6 6 C 1.38185 * 119.16016 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.61458 * 179.97438 * 6 5 4 8 8 N 1.46895 * 109.47483 * 95.00006 * 7 6 5 9 9 C 1.47553 * 111.00197 * 69.86835 * 8 7 6 10 10 C 1.54584 * 107.28775 * 123.20138 * 9 8 7 11 11 C 1.53698 * 102.86091 * 20.98587 * 10 9 8 12 12 C 1.53212 * 111.53336 * 205.83057 * 11 10 9 13 13 C 1.54796 * 101.39377 * 261.15451 * 12 11 10 14 14 N 1.46930 * 105.53968 * 335.82566 * 13 12 11 15 15 C 1.46500 * 124.37937 * 196.74768 * 14 13 12 16 16 C 1.52999 * 109.47092 * 270.02706 * 15 14 13 17 17 C 1.50700 * 109.47008 * 180.02562 * 16 15 14 18 18 H 1.07991 * 120.00234 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99655 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00596 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99932 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46956 * 89.99927 * 21 19 17 23 23 H 1.48500 * 109.47156 * 210.00329 * 21 19 17 24 24 H 1.48504 * 109.47038 * 330.00106 * 21 19 17 25 25 C 1.34890 * 111.24396 * 16.74600 * 14 13 12 26 26 O 1.21279 * 125.22028 * 178.75765 * 25 14 13 27 27 C 1.48130 * 111.00297 * 190.81841 * 8 7 6 28 28 N 1.31860 * 119.61625 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.47183 * 270.02361 * 1 2 3 30 30 H 1.08999 * 109.46631 * 30.02347 * 1 2 3 31 31 H 1.09004 * 109.47134 * 150.02195 * 1 2 3 32 32 H 1.08004 * 120.41620 * 359.97438 * 3 2 1 33 33 H 1.07993 * 120.79452 * 179.97438 * 4 3 2 34 34 H 1.07995 * 120.41697 * 180.27369 * 5 4 3 35 35 H 1.09003 * 109.47222 * 215.00260 * 7 6 5 36 36 H 1.09006 * 109.47164 * 335.00093 * 7 6 5 37 37 H 1.08991 * 109.88479 * 242.62879 * 9 8 7 38 38 H 1.09004 * 109.87522 * 3.78964 * 9 8 7 39 39 H 1.09005 * 110.72870 * 139.32136 * 10 9 8 40 40 H 1.08994 * 110.73720 * 262.63430 * 10 9 8 41 41 H 1.09000 * 111.03849 * 19.18113 * 12 11 10 42 42 H 1.08994 * 111.04168 * 143.12228 * 12 11 10 43 43 H 1.08999 * 110.23560 * 216.81369 * 13 12 11 44 44 H 1.08999 * 110.31018 * 94.88073 * 13 12 11 45 45 H 1.08997 * 109.47126 * 30.02361 * 15 14 13 46 46 H 1.09004 * 109.47129 * 150.02545 * 15 14 13 47 47 H 1.09006 * 109.47036 * 299.99934 * 16 15 14 48 48 H 1.08994 * 109.47561 * 59.99441 * 16 15 14 49 49 H 0.96993 * 120.00317 * 180.02562 * 20 19 17 50 50 H 1.08997 * 110.39383 * 333.88059 * 27 8 7 51 51 H 1.09001 * 110.39581 * 96.28221 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1906 -0.0005 5 6 4.2267 -0.0344 -0.0005 6 6 3.4766 -1.1949 -0.0005 7 6 4.1726 -2.5315 -0.0011 8 7 4.2922 -3.0219 1.3784 9 6 2.9739 -3.4035 1.9202 10 6 3.0703 -4.8807 2.3655 11 6 4.5833 -5.0872 2.5404 12 6 4.9752 -6.5569 2.3562 13 6 5.0748 -7.0332 3.8257 14 7 5.3403 -5.8226 4.6148 15 6 5.8516 -5.8256 5.9877 16 6 4.6781 -5.8589 6.9688 17 6 5.2041 -5.8614 8.3811 18 1 6.2688 -5.8416 8.5608 19 6 4.3259 -5.8889 9.4437 20 7 3.0293 -5.9135 9.2249 21 14 4.9778 -5.8926 11.1943 22 1 5.1228 -4.4939 11.6714 23 1 4.0285 -6.6201 12.0744 24 1 6.3005 -6.5669 11.2285 25 6 5.0524 -4.7080 3.9117 26 8 5.1572 -3.5730 4.3261 27 6 5.1911 -4.1972 1.4480 28 7 2.1587 -1.1463 0.0005 29 1 -0.3634 0.0004 1.0277 30 1 -0.3632 0.8898 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6508 2.1373 -0.0004 33 1 4.1366 2.1138 -0.0010 34 1 5.3056 -0.0806 0.0035 35 1 3.5936 -3.2424 -0.5905 36 1 5.1664 -2.4235 -0.4357 37 1 2.7282 -2.7739 2.7753 38 1 2.2114 -3.2981 1.1484 39 1 2.5482 -5.0338 3.3101 40 1 2.6769 -5.5427 1.5942 41 1 4.2004 -7.1041 1.8192 42 1 5.9365 -6.6451 1.8502 43 1 5.8945 -7.7430 3.9372 44 1 4.1362 -7.4897 4.1399 45 1 6.4778 -6.7046 6.1402 46 1 6.4418 -4.9250 6.1575 47 1 4.0518 -4.9799 6.8163 48 1 4.0879 -6.7594 6.7989 49 1 2.4116 -5.9325 9.9724 50 1 5.2039 -4.7227 0.4931 51 1 6.1989 -3.8888 1.7263 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272944732.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:47 Heat of formation + Delta-G solvation = -18.179670 kcal Electronic energy + Delta-G solvation = -30104.496322 eV Core-core repulsion = 26195.317264 eV Total energy + Delta-G solvation = -3909.179058 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.15581 -41.18840 -39.01374 -37.42037 -35.92115 -34.79437 -33.79815 -33.26790 -31.71048 -30.59120 -29.36097 -28.65209 -27.14510 -26.71322 -24.53256 -23.58367 -23.33553 -23.08536 -21.80733 -21.53197 -19.89473 -18.69508 -17.53416 -17.45787 -17.21253 -17.05328 -16.73699 -16.56268 -16.38255 -16.21319 -15.57248 -15.18542 -14.83868 -14.80518 -14.54455 -14.47857 -14.30915 -14.12908 -13.88064 -13.70526 -13.59310 -13.30757 -13.21191 -13.13871 -13.04116 -12.92293 -12.86215 -12.80960 -12.52826 -12.37432 -12.11933 -11.98225 -11.91008 -11.82994 -11.54554 -11.41991 -10.73629 -10.64304 -10.52389 -10.35048 -9.75731 -9.52289 -9.21714 -8.26020 -6.39458 0.17051 0.38829 1.36611 1.39716 1.50409 1.63533 2.17077 2.40146 2.65410 3.07180 3.12118 3.26128 3.32690 3.49140 3.57806 3.80222 3.89550 3.91458 4.07116 4.18126 4.23055 4.23900 4.31268 4.38222 4.45998 4.49424 4.54283 4.61095 4.63055 4.69665 4.71813 4.73742 4.76719 4.78820 4.83537 4.84943 4.87200 4.94266 5.03429 5.13059 5.18593 5.20992 5.28524 5.32000 5.33932 5.44241 5.59956 5.81735 5.83256 5.95445 6.12035 6.13978 6.34312 6.76260 7.09993 7.29361 7.32342 8.86315 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013059 B = 0.002446 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.663886 B =11444.483385 C =12511.758870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.104 3.896 3 C -0.180 4.180 4 C -0.079 4.079 5 C -0.172 4.172 6 C 0.120 3.880 7 C 0.104 3.896 8 N -0.538 5.538 9 C 0.059 3.941 10 C -0.113 4.113 11 C -0.103 4.103 12 C -0.100 4.100 13 C 0.092 3.908 14 N -0.625 5.625 15 C 0.143 3.857 16 C 0.025 3.975 17 C -0.545 4.545 18 H 0.067 0.933 19 C -0.001 4.001 20 N -0.934 5.934 21 Si 0.972 3.028 22 H -0.277 1.277 23 H -0.278 1.278 24 H -0.255 1.255 25 C 0.513 3.487 26 O -0.572 6.572 27 C 0.078 3.922 28 N -0.504 5.504 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.072 0.928 32 H 0.158 0.842 33 H 0.160 0.840 34 H 0.147 0.853 35 H 0.062 0.938 36 H 0.110 0.890 37 H 0.024 0.976 38 H 0.080 0.920 39 H 0.048 0.952 40 H 0.120 0.880 41 H 0.124 0.876 42 H 0.112 0.888 43 H 0.101 0.899 44 H 0.063 0.937 45 H 0.092 0.908 46 H 0.049 0.951 47 H -0.033 1.033 48 H -0.001 1.001 49 H 0.264 0.736 50 H 0.100 0.900 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.840 5.031 -27.548 28.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.033 4.033 3 C -0.200 4.200 4 C -0.104 4.104 5 C -0.192 4.192 6 C -0.017 4.017 7 C -0.024 4.024 8 N -0.263 5.263 9 C -0.069 4.069 10 C -0.151 4.151 11 C -0.107 4.107 12 C -0.137 4.137 13 C -0.030 4.030 14 N -0.357 5.357 15 C 0.022 3.978 16 C -0.013 4.013 17 C -0.584 4.584 18 H 0.086 0.914 19 C -0.199 4.199 20 N -0.574 5.574 21 Si 0.795 3.205 22 H -0.203 1.203 23 H -0.204 1.204 24 H -0.179 1.179 25 C 0.301 3.699 26 O -0.450 6.450 27 C -0.049 4.049 28 N -0.216 5.216 29 H 0.094 0.906 30 H 0.116 0.884 31 H 0.091 0.909 32 H 0.176 0.824 33 H 0.177 0.823 34 H 0.164 0.836 35 H 0.081 0.919 36 H 0.128 0.872 37 H 0.043 0.957 38 H 0.098 0.902 39 H 0.067 0.933 40 H 0.138 0.862 41 H 0.143 0.857 42 H 0.131 0.869 43 H 0.119 0.881 44 H 0.082 0.918 45 H 0.110 0.890 46 H 0.068 0.932 47 H -0.015 1.015 48 H 0.017 0.983 49 H 0.073 0.927 50 H 0.118 0.882 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.516 5.216 -26.888 27.394 hybrid contribution -0.069 0.582 1.370 1.490 sum 0.446 5.799 -25.517 26.172 Atomic orbital electron populations 1.20752 0.87416 1.04277 1.03285 1.21774 0.98229 0.88570 0.94771 1.22266 0.95359 0.99820 1.02522 1.21965 0.94830 0.99012 0.94613 1.22173 1.02237 0.93001 1.01806 1.21307 0.89357 0.96214 0.94859 1.21191 1.00487 0.91442 0.89279 1.63451 1.10243 1.33265 1.19323 1.22641 0.91264 0.94180 0.98809 1.22586 0.92866 0.97503 1.02194 1.21532 0.97618 0.99073 0.92452 1.22589 1.05601 0.90665 0.94857 1.22437 1.02538 0.86789 0.91217 1.48833 1.64366 1.08287 1.14258 1.21322 0.96116 1.01473 0.78922 1.19197 0.93841 0.94148 0.94093 1.21559 0.93723 1.51209 0.91880 0.91435 1.26064 0.94976 0.94336 1.04557 1.70124 1.02988 1.51195 1.33053 0.85350 0.78777 0.78360 0.77972 1.20266 1.20353 1.17903 1.20977 0.76273 0.84034 0.88589 1.90670 1.54974 1.23143 1.76241 1.22723 0.96384 0.88565 0.97202 1.67265 1.10027 1.30621 1.13642 0.90642 0.88413 0.90917 0.82429 0.82271 0.83560 0.91946 0.87218 0.95691 0.90202 0.93321 0.86225 0.85739 0.86934 0.88094 0.91836 0.88986 0.93237 1.01453 0.98263 0.92685 0.88206 0.90958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.56 10.17 71.24 0.72 -0.84 16 2 C 0.10 2.24 6.78 42.55 0.29 2.53 16 3 C -0.18 -3.20 9.74 22.36 0.22 -2.99 16 4 C -0.08 -1.39 10.18 22.47 0.23 -1.16 16 5 C -0.17 -3.56 9.72 22.36 0.22 -3.34 16 6 C 0.12 2.86 5.94 42.54 0.25 3.11 16 7 C 0.10 2.12 4.87 85.56 0.42 2.54 16 8 N -0.54 -14.43 5.15 -891.48 -4.59 -19.03 16 9 C 0.06 1.75 6.28 86.72 0.54 2.29 16 10 C -0.11 -2.95 5.94 31.37 0.19 -2.77 16 11 C -0.10 -2.69 0.67 -52.74 -0.04 -2.72 16 12 C -0.10 -1.68 6.26 31.28 0.20 -1.49 16 13 C 0.09 2.32 7.37 86.91 0.64 2.96 16 14 N -0.62 -23.64 2.95 -818.20 -2.41 -26.06 16 15 C 0.14 6.45 5.88 86.38 0.51 6.96 16 16 C 0.03 1.43 5.30 29.85 0.16 1.59 16 17 C -0.55 -32.39 9.11 25.60 0.23 -32.15 16 18 H 0.07 3.77 7.74 -2.92 -0.02 3.75 16 19 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 20 N -0.93 -59.37 13.29 21.45 0.28 -59.08 16 21 Si 0.97 45.63 29.54 68.60 2.03 47.66 16 22 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 23 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 24 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 25 C 0.51 20.38 6.73 87.36 0.59 20.97 16 26 O -0.57 -29.05 17.51 -3.03 -0.05 -29.11 16 27 C 0.08 1.74 5.53 86.22 0.48 2.22 16 28 N -0.50 -12.77 8.98 -172.08 -1.55 -14.32 16 29 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.10 0.98 8.08 -2.39 -0.02 0.96 16 31 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 33 H 0.16 1.83 8.06 -2.91 -0.02 1.80 16 34 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 35 H 0.06 1.14 7.96 -2.39 -0.02 1.12 16 36 H 0.11 1.69 7.97 -2.38 -0.02 1.67 16 37 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.08 2.18 6.45 -2.39 -0.02 2.17 16 39 H 0.05 1.58 8.00 -2.38 -0.02 1.56 16 40 H 0.12 2.12 7.74 -2.39 -0.02 2.11 16 41 H 0.12 1.32 7.62 -2.39 -0.02 1.30 16 42 H 0.11 1.32 7.97 -2.39 -0.02 1.30 16 43 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.09 3.59 8.14 -2.39 -0.02 3.57 16 46 H 0.05 2.39 7.96 -2.39 -0.02 2.37 16 47 H -0.03 -2.19 8.14 -2.38 -0.02 -2.21 16 48 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 49 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 50 H 0.10 1.37 7.70 -2.39 -0.02 1.35 16 51 H 0.07 1.79 8.01 -2.39 -0.02 1.78 16 Total: -1.00 -86.56 411.50 0.91 -85.65 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 0.90 Total: 16.18 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: 6.30 Total: -1.89 kcal Atomic # 7 Polarization: -110.22 SS G_CDS: -8.27 Total: -118.49 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -0.05 Total: -29.11 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -86.56 0.91 -85.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272944732.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.471 kcal (2) G-P(sol) polarization free energy of solvation -86.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds