Wall clock time and date at job start Wed Apr 1 2020 02:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38227 * 119.61536 * 2 1 4 4 C 1.38628 * 119.15512 * 180.02562 * 3 2 1 5 5 C 1.38672 * 118.42653 * 359.75354 * 4 3 2 6 6 C 1.38184 * 119.15960 * 0.48453 * 5 4 3 7 7 C 1.50704 * 119.61816 * 179.77533 * 6 5 4 8 8 N 1.46904 * 109.46860 * 94.73070 * 7 6 5 9 9 C 1.47712 * 111.00048 * 56.99324 * 8 7 6 10 10 C 1.54408 * 107.19922 * 122.13116 * 9 8 7 11 11 C 1.55322 * 103.13232 * 22.18944 * 10 9 8 12 12 C 1.46718 * 110.99393 * 177.46467 * 8 7 6 13 13 C 1.53614 * 111.40302 * 94.58144 * 12 8 7 14 14 C 1.54709 * 101.51536 * 214.37833 * 13 12 8 15 15 N 1.46881 * 105.51423 * 24.52832 * 14 13 12 16 16 C 1.46502 * 124.37019 * 163.21744 * 15 14 13 17 17 C 1.53004 * 109.46961 * 269.97839 * 16 15 14 18 18 C 1.50693 * 109.47305 * 180.02562 * 17 16 15 19 19 H 1.08009 * 120.00021 * 0.02562 * 18 17 16 20 20 C 1.37880 * 120.00405 * 180.02562 * 18 17 16 21 21 N 1.31513 * 119.99532 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00165 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47573 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47129 * 119.99814 * 22 20 18 25 25 H 1.48505 * 109.47161 * 239.99299 * 22 20 18 26 26 C 1.34746 * 111.25694 * 343.17629 * 15 14 13 27 27 O 1.21276 * 125.13421 * 181.26901 * 26 15 14 28 28 N 1.31855 * 119.61701 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47553 * 269.97904 * 1 2 3 30 30 H 1.08998 * 109.47002 * 29.98203 * 1 2 3 31 31 H 1.09004 * 109.47258 * 149.98134 * 1 2 3 32 32 H 1.07995 * 120.42538 * 359.97438 * 3 2 1 33 33 H 1.08003 * 120.78826 * 179.97438 * 4 3 2 34 34 H 1.07997 * 120.42047 * 180.24689 * 5 4 3 35 35 H 1.08999 * 109.46992 * 334.73041 * 7 6 5 36 36 H 1.08994 * 109.47109 * 214.73232 * 7 6 5 37 37 H 1.09003 * 109.89522 * 241.52905 * 9 8 7 38 38 H 1.09002 * 109.89441 * 2.73166 * 9 8 7 39 39 H 1.08998 * 110.67943 * 140.59946 * 10 9 8 40 40 H 1.08998 * 110.68246 * 263.60770 * 10 9 8 41 41 H 1.08997 * 111.01056 * 207.34488 * 11 10 9 42 42 H 1.08998 * 111.00900 * 83.47832 * 11 10 9 43 43 H 1.09000 * 111.01846 * 332.42993 * 13 12 8 44 44 H 1.08996 * 111.02312 * 96.28324 * 13 12 8 45 45 H 1.09001 * 110.23912 * 143.53946 * 14 13 12 46 46 H 1.09006 * 110.23612 * 265.51866 * 14 13 12 47 47 H 1.09000 * 109.47273 * 29.97957 * 16 15 14 48 48 H 1.09003 * 109.47201 * 149.98251 * 16 15 14 49 49 H 1.09000 * 109.47082 * 300.00685 * 17 16 15 50 50 H 1.09003 * 109.46827 * 60.00182 * 17 16 15 51 51 H 0.97001 * 119.99990 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2017 0.0000 4 6 3.5763 1.1906 -0.0005 5 6 4.2266 -0.0342 0.0042 6 6 3.4766 -1.1948 -0.0010 7 6 4.1727 -2.5314 -0.0011 8 7 4.2924 -3.0212 1.3787 9 6 2.9673 -3.1117 2.0251 10 6 2.7781 -4.5765 2.4756 11 6 4.2345 -5.1083 2.5678 12 6 4.9126 -4.3504 1.4128 13 6 6.4286 -4.2559 1.6422 14 6 6.9433 -5.4475 0.8004 15 7 5.9134 -5.6812 -0.2205 16 6 6.1212 -6.4650 -1.4406 17 6 6.6113 -5.5449 -2.5605 18 6 6.8244 -6.3510 -3.8158 19 1 6.6294 -7.4133 -3.8151 20 6 7.2684 -5.7325 -4.9653 21 7 7.5054 -4.4389 -4.9663 22 14 7.5319 -6.7316 -6.5214 23 1 7.1958 -8.1540 -6.2594 24 1 6.6574 -6.2066 -7.6007 25 1 8.9526 -6.6283 -6.9414 26 6 4.7526 -5.0823 0.1106 27 8 3.7313 -5.1310 -0.5416 28 7 2.1586 -1.1463 -0.0005 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3633 0.8901 -0.5135 31 1 -0.3634 -0.8898 -0.5141 32 1 1.6508 2.1373 -0.0004 33 1 4.1366 2.1139 -0.0010 34 1 5.3056 -0.0805 0.0079 35 1 5.1664 -2.4236 -0.4358 36 1 3.5937 -3.2426 -0.5901 37 1 2.9307 -2.4499 2.8905 38 1 2.1880 -2.8389 1.3135 39 1 2.2900 -4.6198 3.4492 40 1 2.2072 -5.1364 1.7348 41 1 4.2686 -6.1850 2.4022 42 1 4.6859 -4.8472 3.5249 43 1 6.8229 -3.3121 1.2656 44 1 6.6734 -4.3866 2.6963 45 1 7.8920 -5.1933 0.3276 46 1 7.0589 -6.3308 1.4285 47 1 6.8663 -7.2382 -1.2533 48 1 5.1814 -6.9304 -1.7379 49 1 5.8662 -4.7717 -2.7478 50 1 7.5510 -5.0795 -2.2632 51 1 7.8174 -4.0036 -5.7751 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272945542.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:54 Heat of formation + Delta-G solvation = -8.354121 kcal Electronic energy + Delta-G solvation = -31225.193328 eV Core-core repulsion = 27316.440338 eV Total energy + Delta-G solvation = -3908.752990 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.53711 -41.19252 -38.76231 -37.61871 -35.69257 -34.83309 -33.76747 -33.42708 -32.19728 -30.78312 -28.87229 -28.82995 -27.00445 -26.85745 -24.70203 -23.64111 -23.24010 -23.14101 -21.90589 -21.48309 -19.97485 -18.72830 -17.75035 -17.58357 -17.32916 -17.01825 -16.92637 -16.56805 -16.26985 -16.10503 -15.69967 -15.18776 -15.09131 -14.83788 -14.67353 -14.45799 -14.23371 -14.15995 -13.98854 -13.73179 -13.57009 -13.39485 -13.14536 -13.07520 -12.96574 -12.84283 -12.81788 -12.59979 -12.55092 -12.29768 -12.15045 -12.05485 -11.88863 -11.86312 -11.56031 -11.42026 -10.98826 -10.75638 -10.64291 -10.33122 -9.85283 -9.63741 -9.26423 -8.27019 -6.40145 0.10843 0.35158 1.35778 1.37474 1.45750 1.51039 2.10452 2.38388 2.57308 2.96457 3.06466 3.17320 3.37134 3.45784 3.67160 3.71194 3.86549 3.90864 4.07778 4.13546 4.17921 4.19500 4.27778 4.28769 4.40473 4.49480 4.54814 4.63317 4.65661 4.68952 4.71421 4.76235 4.79792 4.83884 4.84486 4.87000 4.97263 5.02521 5.07727 5.16206 5.17452 5.23073 5.27953 5.29378 5.31196 5.41977 5.56419 5.74682 5.78651 5.81861 5.86270 6.11636 6.25248 6.75101 7.06720 7.16500 7.29933 8.85200 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.009791 B = 0.003511 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2858.992743 B = 7972.072807 C = 9699.439080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.106 3.894 3 C -0.170 4.170 4 C -0.070 4.070 5 C -0.172 4.172 6 C 0.123 3.877 7 C 0.080 3.920 8 N -0.477 5.477 9 C 0.032 3.968 10 C -0.136 4.136 11 C -0.095 4.095 12 C 0.063 3.937 13 C -0.100 4.100 14 C 0.092 3.908 15 N -0.616 5.616 16 C 0.142 3.858 17 C 0.028 3.972 18 C -0.545 4.545 19 H 0.066 0.934 20 C 0.002 3.998 21 N -0.932 5.932 22 Si 0.970 3.030 23 H -0.259 1.259 24 H -0.282 1.282 25 H -0.271 1.271 26 C 0.488 3.512 27 O -0.574 6.574 28 N -0.508 5.508 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.059 0.941 32 H 0.169 0.831 33 H 0.168 0.832 34 H 0.140 0.860 35 H 0.067 0.933 36 H 0.051 0.949 37 H 0.087 0.913 38 H 0.062 0.938 39 H 0.105 0.895 40 H 0.041 0.959 41 H 0.077 0.923 42 H 0.125 0.875 43 H 0.079 0.921 44 H 0.137 0.863 45 H 0.079 0.921 46 H 0.105 0.895 47 H 0.093 0.907 48 H 0.049 0.951 49 H -0.032 1.032 50 H 0.001 0.999 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.601 9.093 20.837 23.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.032 4.032 3 C -0.190 4.190 4 C -0.095 4.095 5 C -0.192 4.192 6 C -0.013 4.013 7 C -0.048 4.048 8 N -0.200 5.200 9 C -0.096 4.096 10 C -0.174 4.174 11 C -0.133 4.133 12 C -0.030 4.030 13 C -0.138 4.138 14 C -0.030 4.030 15 N -0.349 5.349 16 C 0.020 3.980 17 C -0.010 4.010 18 C -0.584 4.584 19 H 0.084 0.916 20 C -0.197 4.197 21 N -0.571 5.571 22 Si 0.793 3.207 23 H -0.182 1.182 24 H -0.208 1.208 25 H -0.196 1.196 26 C 0.276 3.724 27 O -0.455 6.455 28 N -0.220 5.220 29 H 0.109 0.891 30 H 0.118 0.882 31 H 0.078 0.922 32 H 0.187 0.813 33 H 0.186 0.814 34 H 0.158 0.842 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.105 0.895 38 H 0.080 0.920 39 H 0.123 0.877 40 H 0.060 0.940 41 H 0.095 0.905 42 H 0.143 0.857 43 H 0.098 0.902 44 H 0.155 0.845 45 H 0.097 0.903 46 H 0.123 0.877 47 H 0.111 0.889 48 H 0.067 0.933 49 H -0.014 1.014 50 H 0.020 0.980 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.188 8.723 20.598 23.495 hybrid contribution 0.177 -0.163 -2.261 2.274 sum -7.011 8.560 18.337 21.416 Atomic orbital electron populations 1.20771 0.87014 1.03871 1.03949 1.21899 0.98426 0.88326 0.94569 1.22316 0.95078 0.99787 1.01816 1.21975 0.94937 0.98443 0.94174 1.22102 1.01957 0.93029 1.02116 1.20853 0.89605 0.94895 0.95987 1.21337 0.98829 0.93092 0.91570 1.63985 1.21272 1.20612 1.14125 1.23086 0.89988 0.97260 0.99260 1.22799 0.97336 0.95001 1.02299 1.22592 0.94389 0.99217 0.97094 1.22269 0.98758 0.89082 0.92920 1.22604 0.89923 0.98056 1.03177 1.22526 0.91275 0.99945 0.89231 1.48774 1.13192 1.51079 1.21811 1.21363 1.00310 0.93547 0.82784 1.19169 0.94109 0.94394 0.93355 1.21569 1.44952 0.95478 0.96371 0.91592 1.26013 0.94778 0.96049 1.02828 1.70124 1.46469 1.10981 1.29555 0.85331 0.78066 0.79092 0.78163 1.18233 1.20838 1.19647 1.21831 0.82806 0.79349 0.88434 1.90613 1.32445 1.62799 1.59600 1.67255 1.09719 1.31250 1.13767 0.89086 0.88190 0.92167 0.81349 0.81432 0.84189 0.91462 0.93071 0.89525 0.91979 0.87703 0.93978 0.90479 0.85726 0.90206 0.84535 0.90252 0.87732 0.88872 0.93278 1.01361 0.98044 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.77 10.17 71.24 0.72 -1.05 16 2 C 0.11 2.65 6.78 42.55 0.29 2.94 16 3 C -0.17 -3.34 9.74 22.36 0.22 -3.12 16 4 C -0.07 -1.43 10.18 22.47 0.23 -1.20 16 5 C -0.17 -4.67 9.72 22.36 0.22 -4.45 16 6 C 0.12 4.12 5.66 42.54 0.24 4.36 16 7 C 0.08 3.00 4.33 85.56 0.37 3.37 16 8 N -0.48 -14.39 4.94 -848.76 -4.19 -18.58 16 9 C 0.03 0.88 6.27 86.63 0.54 1.43 16 10 C -0.14 -3.31 6.84 31.87 0.22 -3.09 16 11 C -0.09 -2.03 5.97 31.69 0.19 -1.84 16 12 C 0.06 1.79 0.71 3.18 0.00 1.79 16 13 C -0.10 -2.18 6.46 31.38 0.20 -1.98 16 14 C 0.09 2.35 7.37 86.89 0.64 2.99 16 15 N -0.62 -23.16 2.94 -818.13 -2.41 -25.57 16 16 C 0.14 6.30 5.89 86.38 0.51 6.81 16 17 C 0.03 1.55 5.30 29.85 0.16 1.71 16 18 C -0.55 -32.07 9.11 25.60 0.23 -31.83 16 19 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 20 C 0.00 0.09 5.46 84.66 0.46 0.55 16 21 N -0.93 -58.47 13.29 21.45 0.28 -58.19 16 22 Si 0.97 45.35 29.54 68.60 2.03 47.37 16 23 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 24 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 25 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 26 C 0.49 19.30 5.57 87.51 0.49 19.79 16 27 O -0.57 -28.37 15.10 -3.02 -0.05 -28.42 16 28 N -0.51 -16.69 8.23 -172.07 -1.42 -18.11 16 29 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.10 1.21 8.08 -2.39 -0.02 1.19 16 31 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 33 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 34 H 0.14 3.49 8.06 -2.91 -0.02 3.46 16 35 H 0.07 2.68 8.04 -2.39 -0.02 2.66 16 36 H 0.05 2.42 5.13 -2.39 -0.01 2.40 16 37 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.06 2.10 5.49 -2.39 -0.01 2.08 16 39 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.08 1.66 8.00 -2.39 -0.02 1.64 16 42 H 0.12 1.74 7.78 -2.39 -0.02 1.72 16 43 H 0.08 1.91 8.12 -2.39 -0.02 1.89 16 44 H 0.14 1.77 7.63 -2.39 -0.02 1.75 16 45 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 47 H 0.09 3.60 8.14 -2.39 -0.02 3.58 16 48 H 0.05 2.36 7.93 -2.39 -0.02 2.34 16 49 H -0.03 -2.09 8.14 -2.39 -0.02 -2.11 16 50 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 51 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -83.03 404.70 1.09 -81.95 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: 0.91 Total: 22.36 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: 5.93 Total: -2.83 kcal Atomic # 7 Polarization: -112.71 SS G_CDS: -7.73 Total: -120.44 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -0.05 Total: -28.42 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Total: -83.03 1.09 -81.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272945542.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.593 kcal (2) G-P(sol) polarization free energy of solvation -83.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds