Wall clock time and date at job start Wed Apr 1 2020 02:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38675 * 120.41766 * 2 1 4 4 C 1.38637 * 118.41734 * 179.70930 * 3 2 1 5 5 C 1.38227 * 119.16075 * 0.51017 * 4 3 2 6 6 C 1.50705 * 119.61813 * 179.75200 * 5 4 3 7 7 N 1.46900 * 109.46876 * 94.72942 * 6 5 4 8 8 C 1.47555 * 110.99796 * 290.12702 * 7 6 5 9 9 C 1.54583 * 107.41778 * 236.73048 * 8 7 6 10 10 C 1.53943 * 102.74590 * 339.19409 * 9 8 7 11 11 C 1.53221 * 111.55261 * 154.05174 * 10 9 8 12 12 C 1.54799 * 101.39099 * 98.70415 * 11 10 9 13 13 N 1.46929 * 105.54171 * 24.18418 * 12 11 10 14 14 C 1.46499 * 124.37789 * 163.25156 * 13 12 11 15 15 C 1.52995 * 109.47341 * 89.99728 * 14 13 12 16 16 C 1.50701 * 109.47380 * 179.97438 * 15 14 13 17 17 H 1.07995 * 119.99763 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00022 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99883 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99697 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47227 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46886 * 120.00413 * 20 18 16 23 23 H 1.48499 * 109.47040 * 240.00096 * 20 18 16 24 24 C 1.34889 * 111.24291 * 343.24983 * 13 12 11 25 25 O 1.21275 * 125.21649 * 181.27233 * 24 13 12 26 26 C 1.48122 * 110.99653 * 169.18277 * 7 6 5 27 27 N 1.31859 * 120.76139 * 359.48156 * 5 4 3 28 28 C 1.31883 * 121.72850 * 0.27135 * 27 5 4 29 29 H 1.08996 * 109.46812 * 270.02043 * 1 2 3 30 30 H 1.09001 * 109.46730 * 30.02267 * 1 2 3 31 31 H 1.08999 * 109.46922 * 150.01999 * 1 2 3 32 32 H 1.07994 * 120.79269 * 0.02562 * 3 2 1 33 33 H 1.08000 * 120.41760 * 180.28397 * 4 3 2 34 34 H 1.08998 * 109.46617 * 334.73040 * 6 5 4 35 35 H 1.09002 * 109.46966 * 214.72995 * 6 5 4 36 36 H 1.09002 * 109.88176 * 356.23110 * 8 7 6 37 37 H 1.08996 * 109.87677 * 117.23349 * 8 7 6 38 38 H 1.09000 * 110.73301 * 97.44960 * 9 8 7 39 39 H 1.09002 * 110.73232 * 220.75846 * 9 8 7 40 40 H 1.08993 * 111.04190 * 216.72909 * 11 10 9 41 41 H 1.08995 * 111.03780 * 340.67824 * 11 10 9 42 42 H 1.09002 * 110.23114 * 143.20284 * 12 11 10 43 43 H 1.08999 * 110.23056 * 265.16346 * 12 11 10 44 44 H 1.09002 * 109.47021 * 210.00257 * 14 13 12 45 45 H 1.09002 * 109.47223 * 329.99980 * 14 13 12 46 46 H 1.09002 * 109.47495 * 300.00239 * 15 14 13 47 47 H 1.08998 * 109.47199 * 59.99750 * 15 14 13 48 48 H 0.97006 * 119.99612 * 180.02562 * 19 18 16 49 49 H 1.09003 * 110.39580 * 263.70046 * 26 7 6 50 50 H 1.09005 * 110.39828 * 25.98811 * 26 7 6 51 51 H 1.07995 * 119.61474 * 180.02562 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5946 1.1475 0.0062 5 6 4.2257 -0.0823 0.0014 6 6 5.7313 -0.1469 0.0023 7 7 6.2144 -0.2880 1.3824 8 6 5.9963 0.9540 2.1486 9 6 7.3693 1.4079 2.6949 10 6 8.1985 0.1117 2.6489 11 6 9.6970 0.4063 2.5259 12 6 10.1587 0.2624 3.9964 13 7 9.1689 -0.6154 4.6356 14 6 9.3776 -1.3073 5.9100 15 6 8.9012 -0.4158 7.0584 16 6 9.1152 -1.1278 8.3692 17 1 9.5482 -2.1170 8.3819 18 6 8.7593 -0.5157 9.5524 19 7 8.2325 0.6892 9.5368 20 14 9.0253 -1.3980 11.1772 21 1 9.6289 -2.7310 10.9237 22 1 9.9375 -0.5966 12.0320 23 1 7.7216 -1.5677 11.8676 24 6 8.0433 -0.7018 3.8974 25 8 7.0567 -1.3396 4.1985 26 6 7.6594 -0.6129 1.4083 27 7 3.5254 -1.1996 0.0013 28 6 2.2066 -1.1916 0.0004 29 1 -0.3633 0.0004 1.0276 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6890 2.1423 0.0004 33 1 4.1736 2.0592 0.0110 34 1 6.1344 0.7679 -0.4320 35 1 6.0586 -1.0038 -0.5866 36 1 5.5838 1.7241 1.4966 37 1 5.3126 0.7639 2.9759 38 1 7.8083 2.1696 2.0505 39 1 7.2760 1.7732 3.7176 40 1 10.1890 -0.3277 1.8877 41 1 9.8681 1.4184 2.1593 42 1 11.1485 -0.1923 4.0380 43 1 10.1699 1.2366 4.4850 44 1 8.8118 -2.2390 5.9144 45 1 10.4381 -1.5257 6.0355 46 1 9.4669 0.5159 7.0539 47 1 7.8407 -0.1974 6.9329 48 1 7.9824 1.1199 10.3693 49 1 7.8051 -1.6889 1.5036 50 1 8.1483 -0.2424 0.5073 51 1 1.6673 -2.1273 0.0008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273231793.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:03 Heat of formation + Delta-G solvation = 5.475730 kcal Electronic energy + Delta-G solvation = -29965.226485 eV Core-core repulsion = 26057.073203 eV Total energy + Delta-G solvation = -3908.153283 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.99826 -40.35876 -37.87778 -35.89898 -34.56908 -33.62940 -32.68118 -31.92149 -30.59888 -29.20892 -28.48965 -27.54350 -25.31020 -24.89893 -23.74953 -23.28671 -21.89149 -21.84918 -20.78228 -20.26960 -18.53218 -16.92331 -16.66807 -16.36702 -16.03824 -15.80741 -15.53567 -15.37913 -15.20679 -14.54889 -14.39665 -14.25299 -13.78129 -13.63345 -13.45733 -13.19688 -13.18420 -12.93824 -12.74508 -12.61176 -12.57192 -12.38597 -12.33532 -12.11470 -11.96096 -11.81756 -11.46661 -11.27711 -11.05110 -10.95202 -10.88492 -10.70030 -10.61108 -9.95338 -9.93216 -9.82117 -9.51720 -9.26022 -8.98692 -8.96713 -8.35510 -8.27451 -7.92769 -6.00508 -4.03543 0.89558 1.13146 3.09672 3.32009 3.39142 3.43237 3.47183 3.61580 4.00832 4.10621 4.41638 4.43262 4.47524 4.51144 4.57230 4.59324 4.71101 4.79251 4.85326 5.01148 5.11845 5.15478 5.20204 5.27162 5.27788 5.35381 5.35902 5.45002 5.49014 5.52506 5.58033 5.62777 5.72484 5.73112 5.78577 5.87382 5.90303 5.93909 6.04749 6.07563 6.13096 6.22788 6.51477 6.52801 6.85687 6.89595 7.00164 7.09814 7.56652 7.70832 7.90617 7.91818 8.00314 8.36908 8.81395 9.03759 9.60400 11.11020 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012786 B = 0.002405 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.422825 B =11638.182541 C =13010.170654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.144 4.144 3 C -0.077 4.077 4 C -0.163 4.163 5 C 0.136 3.864 6 C 0.099 3.901 7 N -0.508 5.508 8 C 0.046 3.954 9 C -0.117 4.117 10 C -0.108 4.108 11 C -0.120 4.120 12 C 0.104 3.896 13 N -0.617 5.617 14 C 0.129 3.871 15 C 0.012 3.988 16 C -0.520 4.520 17 H 0.057 0.943 18 C 0.058 3.942 19 N -0.893 5.893 20 Si 0.894 3.106 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.283 1.283 24 C 0.529 3.471 25 O -0.508 6.508 26 C 0.074 3.926 27 N -0.460 5.460 28 C 0.102 3.898 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.050 0.950 35 H 0.091 0.909 36 H 0.055 0.945 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.064 0.936 46 H 0.016 0.984 47 H 0.020 0.980 48 H 0.260 0.740 49 H 0.085 0.915 50 H 0.055 0.945 51 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.013 4.554 -25.404 26.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.146 4.146 3 C -0.103 4.103 4 C -0.184 4.184 5 C -0.002 4.002 6 C -0.029 4.029 7 N -0.232 5.232 8 C -0.082 4.082 9 C -0.156 4.156 10 C -0.112 4.112 11 C -0.158 4.158 12 C -0.020 4.020 13 N -0.351 5.351 14 C 0.009 3.991 15 C -0.026 4.026 16 C -0.559 4.559 17 H 0.076 0.924 18 C -0.143 4.143 19 N -0.532 5.532 20 Si 0.722 3.278 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.209 1.209 24 C 0.314 3.686 25 O -0.382 6.382 26 C -0.054 4.054 27 N -0.168 5.168 28 C -0.056 4.056 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.068 0.932 35 H 0.109 0.891 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.106 0.894 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.082 0.918 46 H 0.034 0.966 47 H 0.039 0.961 48 H 0.070 0.930 49 H 0.103 0.897 50 H 0.073 0.927 51 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.422 3.073 -24.820 25.821 hybrid contribution 0.135 1.248 0.791 1.484 sum -6.286 4.321 -24.029 25.211 Atomic orbital electron populations 1.20711 0.90299 1.02915 1.02701 1.20944 0.97563 0.94363 1.01744 1.21431 0.93926 0.98137 0.96832 1.21968 0.95226 0.98875 1.02310 1.21029 0.96038 0.88292 0.94844 1.21103 0.89161 1.01549 0.91085 1.63580 1.16081 1.32996 1.10559 1.22944 0.97243 0.89846 0.98155 1.22589 0.94946 0.95087 1.02967 1.21585 0.96489 0.97071 0.96060 1.22483 0.93317 1.03038 0.96935 1.22050 0.92879 0.95266 0.91812 1.48686 1.16052 1.47490 1.22846 1.21767 1.00304 0.96092 0.80891 1.19405 0.97168 0.94802 0.91241 1.21138 1.41454 1.02352 0.90969 0.92435 1.25005 0.95083 0.94932 0.99319 1.69987 1.42464 1.13770 1.27006 0.86501 0.77867 0.79789 0.83642 1.19646 1.21023 1.20947 1.19868 0.82895 0.81233 0.84589 1.90734 1.30869 1.42593 1.74051 1.22682 0.86720 1.01061 0.94894 1.67478 1.07900 1.31003 1.10463 1.22683 0.89797 0.97449 0.95689 0.90818 0.91493 0.91213 0.85013 0.85127 0.93182 0.89057 0.92717 0.90101 0.90431 0.89878 0.89948 0.89389 0.90696 0.91220 0.91217 0.91773 0.96569 0.96130 0.93034 0.89663 0.92667 0.82916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.04 36.01 0.36 -0.32 16 2 C -0.14 -1.33 5.90 -104.48 -0.62 -1.95 16 3 C -0.08 -0.69 9.86 -39.27 -0.39 -1.08 16 4 C -0.16 -1.61 8.78 -39.44 -0.35 -1.96 16 5 C 0.14 1.63 5.93 -82.58 -0.49 1.14 16 6 C 0.10 1.09 4.91 -4.97 -0.02 1.06 16 7 N -0.51 -6.88 5.15 -233.13 -1.20 -8.08 16 8 C 0.05 0.60 6.30 -2.63 -0.02 0.58 16 9 C -0.12 -1.45 5.96 -25.41 -0.15 -1.60 16 10 C -0.11 -1.45 0.68 -155.24 -0.10 -1.55 16 11 C -0.12 -1.22 6.26 -25.67 -0.16 -1.38 16 12 C 0.10 1.39 7.37 -2.86 -0.02 1.37 16 13 N -0.62 -11.42 2.95 -172.56 -0.51 -11.93 16 14 C 0.13 2.82 5.88 -4.04 -0.02 2.79 16 15 C 0.01 0.31 5.30 -27.89 -0.15 0.17 16 16 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 17 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -27.39 13.29 55.43 0.74 -26.65 16 20 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 21 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 23 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 24 C 0.53 10.10 6.73 -11.36 -0.08 10.02 16 25 O -0.51 -12.09 17.51 5.56 0.10 -12.00 16 26 C 0.07 0.91 5.54 -2.92 -0.02 0.90 16 27 N -0.46 -6.18 10.27 -9.47 -0.10 -6.28 16 28 C 0.10 1.12 10.86 -17.55 -0.19 0.93 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 31 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 32 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 33 H 0.13 1.00 7.28 -52.49 -0.38 0.62 16 34 H 0.05 0.43 7.86 -51.93 -0.41 0.02 16 35 H 0.09 0.98 8.07 -51.93 -0.42 0.56 16 36 H 0.05 0.57 5.79 -51.93 -0.30 0.27 16 37 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.08 0.72 7.75 -51.93 -0.40 0.31 16 39 H 0.08 1.20 8.01 -51.93 -0.42 0.78 16 40 H 0.08 0.72 7.97 -51.93 -0.41 0.30 16 41 H 0.09 0.69 7.62 -51.93 -0.40 0.29 16 42 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.07 1.61 7.96 -51.93 -0.41 1.20 16 45 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 48 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 49 H 0.09 1.18 8.01 -51.93 -0.42 0.77 16 50 H 0.06 0.51 7.70 -51.93 -0.40 0.11 16 51 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 410.26 15.07 6.18 6.18 Total: -1.00 -36.60 410.26 -11.19 -47.79 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -8.55 Total: -1.45 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: -2.82 Total: -4.60 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: -1.07 Total: -52.94 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.10 Total: -12.00 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -36.60 -11.19 -47.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273231793.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.270 kcal (2) G-P(sol) polarization free energy of solvation -36.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds