Wall clock time and date at job start Wed Apr 1 2020 02:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38675 * 120.41766 * 2 1 4 4 C 1.38637 * 118.41734 * 179.70930 * 3 2 1 5 5 C 1.38227 * 119.16075 * 0.51017 * 4 3 2 6 6 C 1.50705 * 119.61813 * 179.75200 * 5 4 3 7 7 N 1.46900 * 109.46876 * 94.72942 * 6 5 4 8 8 C 1.47555 * 110.99796 * 290.12702 * 7 6 5 9 9 C 1.54583 * 107.41778 * 236.73048 * 8 7 6 10 10 C 1.53943 * 102.74590 * 339.19409 * 9 8 7 11 11 C 1.53221 * 111.55261 * 154.05174 * 10 9 8 12 12 C 1.54799 * 101.39099 * 98.70415 * 11 10 9 13 13 N 1.46929 * 105.54171 * 24.18418 * 12 11 10 14 14 C 1.46499 * 124.37789 * 163.25156 * 13 12 11 15 15 C 1.52995 * 109.47341 * 89.99728 * 14 13 12 16 16 C 1.50701 * 109.47380 * 179.97438 * 15 14 13 17 17 H 1.07995 * 119.99763 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00022 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99883 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99697 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47227 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46886 * 120.00413 * 20 18 16 23 23 H 1.48499 * 109.47040 * 240.00096 * 20 18 16 24 24 C 1.34889 * 111.24291 * 343.24983 * 13 12 11 25 25 O 1.21275 * 125.21649 * 181.27233 * 24 13 12 26 26 C 1.48122 * 110.99653 * 169.18277 * 7 6 5 27 27 N 1.31859 * 120.76139 * 359.48156 * 5 4 3 28 28 C 1.31883 * 121.72850 * 0.27135 * 27 5 4 29 29 H 1.08996 * 109.46812 * 270.02043 * 1 2 3 30 30 H 1.09001 * 109.46730 * 30.02267 * 1 2 3 31 31 H 1.08999 * 109.46922 * 150.01999 * 1 2 3 32 32 H 1.07994 * 120.79269 * 0.02562 * 3 2 1 33 33 H 1.08000 * 120.41760 * 180.28397 * 4 3 2 34 34 H 1.08998 * 109.46617 * 334.73040 * 6 5 4 35 35 H 1.09002 * 109.46966 * 214.72995 * 6 5 4 36 36 H 1.09002 * 109.88176 * 356.23110 * 8 7 6 37 37 H 1.08996 * 109.87677 * 117.23349 * 8 7 6 38 38 H 1.09000 * 110.73301 * 97.44960 * 9 8 7 39 39 H 1.09002 * 110.73232 * 220.75846 * 9 8 7 40 40 H 1.08993 * 111.04190 * 216.72909 * 11 10 9 41 41 H 1.08995 * 111.03780 * 340.67824 * 11 10 9 42 42 H 1.09002 * 110.23114 * 143.20284 * 12 11 10 43 43 H 1.08999 * 110.23056 * 265.16346 * 12 11 10 44 44 H 1.09002 * 109.47021 * 210.00257 * 14 13 12 45 45 H 1.09002 * 109.47223 * 329.99980 * 14 13 12 46 46 H 1.09002 * 109.47495 * 300.00239 * 15 14 13 47 47 H 1.08998 * 109.47199 * 59.99750 * 15 14 13 48 48 H 0.97006 * 119.99612 * 180.02562 * 19 18 16 49 49 H 1.09003 * 110.39580 * 263.70046 * 26 7 6 50 50 H 1.09005 * 110.39828 * 25.98811 * 26 7 6 51 51 H 1.07995 * 119.61474 * 180.02562 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5946 1.1475 0.0062 5 6 4.2257 -0.0823 0.0014 6 6 5.7313 -0.1469 0.0023 7 7 6.2144 -0.2880 1.3824 8 6 5.9963 0.9540 2.1486 9 6 7.3693 1.4079 2.6949 10 6 8.1985 0.1117 2.6489 11 6 9.6970 0.4063 2.5259 12 6 10.1587 0.2624 3.9964 13 7 9.1689 -0.6154 4.6356 14 6 9.3776 -1.3073 5.9100 15 6 8.9012 -0.4158 7.0584 16 6 9.1152 -1.1278 8.3692 17 1 9.5482 -2.1170 8.3819 18 6 8.7593 -0.5157 9.5524 19 7 8.2325 0.6892 9.5368 20 14 9.0253 -1.3980 11.1772 21 1 9.6289 -2.7310 10.9237 22 1 9.9375 -0.5966 12.0320 23 1 7.7216 -1.5677 11.8676 24 6 8.0433 -0.7018 3.8974 25 8 7.0567 -1.3396 4.1985 26 6 7.6594 -0.6129 1.4083 27 7 3.5254 -1.1996 0.0013 28 6 2.2066 -1.1916 0.0004 29 1 -0.3633 0.0004 1.0276 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6890 2.1423 0.0004 33 1 4.1736 2.0592 0.0110 34 1 6.1344 0.7679 -0.4320 35 1 6.0586 -1.0038 -0.5866 36 1 5.5838 1.7241 1.4966 37 1 5.3126 0.7639 2.9759 38 1 7.8083 2.1696 2.0505 39 1 7.2760 1.7732 3.7176 40 1 10.1890 -0.3277 1.8877 41 1 9.8681 1.4184 2.1593 42 1 11.1485 -0.1923 4.0380 43 1 10.1699 1.2366 4.4850 44 1 8.8118 -2.2390 5.9144 45 1 10.4381 -1.5257 6.0355 46 1 9.4669 0.5159 7.0539 47 1 7.8407 -0.1974 6.9329 48 1 7.9824 1.1199 10.3693 49 1 7.8051 -1.6889 1.5036 50 1 8.1483 -0.2424 0.5073 51 1 1.6673 -2.1273 0.0008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273231793.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:02 Heat of formation + Delta-G solvation = -19.966080 kcal Electronic energy + Delta-G solvation = -29966.329725 eV Core-core repulsion = 26057.073203 eV Total energy + Delta-G solvation = -3909.256523 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.14975 -41.19449 -39.03325 -37.42433 -35.95245 -34.98868 -33.99355 -32.96925 -31.81985 -30.59775 -29.51223 -28.50661 -27.03890 -25.92327 -24.51244 -24.45913 -23.56493 -22.65804 -21.82718 -21.57546 -19.90442 -18.69976 -17.71168 -17.53343 -17.07264 -16.95722 -16.73927 -16.62981 -16.37703 -16.09954 -15.65072 -15.06098 -14.88171 -14.79128 -14.52971 -14.47769 -14.31642 -14.15059 -13.97681 -13.70326 -13.61822 -13.38890 -13.23706 -13.19275 -13.13217 -12.94750 -12.87377 -12.79384 -12.53365 -12.28162 -12.09257 -11.97674 -11.90720 -11.83975 -11.53658 -11.40657 -10.68512 -10.64708 -10.52332 -10.31059 -9.72494 -9.52209 -9.16621 -8.26647 -6.39646 0.14182 0.39178 1.36170 1.38224 1.51377 1.64431 2.17290 2.39934 2.66031 3.06659 3.13365 3.31827 3.34237 3.51851 3.59604 3.83206 3.89060 3.94845 3.99405 4.10917 4.11937 4.21058 4.30115 4.37834 4.40303 4.42897 4.52933 4.58617 4.61472 4.66943 4.73402 4.78076 4.78647 4.80671 4.83269 4.84712 4.92222 4.94284 5.04411 5.14184 5.17202 5.19310 5.23266 5.31936 5.37013 5.44347 5.60104 5.81533 5.82395 5.99660 6.13239 6.14901 6.34921 6.75972 7.13537 7.29382 7.32709 8.85891 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012786 B = 0.002405 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.422825 B =11638.182541 C =13010.170654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.145 4.145 3 C -0.084 4.084 4 C -0.165 4.165 5 C 0.110 3.890 6 C 0.104 3.896 7 N -0.543 5.543 8 C 0.052 3.948 9 C -0.112 4.112 10 C -0.103 4.103 11 C -0.099 4.099 12 C 0.092 3.908 13 N -0.625 5.625 14 C 0.143 3.857 15 C 0.026 3.974 16 C -0.545 4.545 17 H 0.066 0.934 18 C -0.001 4.001 19 N -0.933 5.933 20 Si 0.972 3.028 21 H -0.259 1.259 22 H -0.271 1.271 23 H -0.282 1.282 24 C 0.511 3.489 25 O -0.574 6.574 26 C 0.080 3.920 27 N -0.501 5.501 28 C 0.077 3.923 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.161 0.839 33 H 0.156 0.844 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.029 0.971 38 H 0.128 0.872 39 H 0.051 0.949 40 H 0.108 0.892 41 H 0.129 0.871 42 H 0.099 0.901 43 H 0.066 0.934 44 H 0.046 0.954 45 H 0.091 0.909 46 H 0.001 0.999 47 H -0.032 1.032 48 H 0.265 0.735 49 H 0.060 0.940 50 H 0.102 0.898 51 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.373 6.130 -27.438 28.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.147 4.147 3 C -0.109 4.109 4 C -0.185 4.185 5 C -0.028 4.028 6 C -0.024 4.024 7 N -0.268 5.268 8 C -0.076 4.076 9 C -0.150 4.150 10 C -0.107 4.107 11 C -0.137 4.137 12 C -0.030 4.030 13 N -0.358 5.358 14 C 0.021 3.979 15 C -0.012 4.012 16 C -0.583 4.583 17 H 0.084 0.916 18 C -0.199 4.199 19 N -0.573 5.573 20 Si 0.795 3.205 21 H -0.183 1.183 22 H -0.196 1.196 23 H -0.208 1.208 24 C 0.299 3.701 25 O -0.453 6.453 26 C -0.047 4.047 27 N -0.211 5.211 28 C -0.081 4.081 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.178 0.822 33 H 0.174 0.826 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.047 0.953 38 H 0.146 0.854 39 H 0.070 0.930 40 H 0.127 0.873 41 H 0.148 0.852 42 H 0.117 0.883 43 H 0.085 0.915 44 H 0.065 0.935 45 H 0.110 0.890 46 H 0.019 0.981 47 H -0.014 1.014 48 H 0.073 0.927 49 H 0.078 0.922 50 H 0.120 0.880 51 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -4.740 4.667 -26.890 27.700 hybrid contribution -0.468 0.757 1.450 1.701 sum -5.207 5.424 -25.440 26.528 Atomic orbital electron populations 1.20763 0.88164 1.04289 1.03127 1.21285 0.99156 0.93912 1.00355 1.21861 0.93966 0.99206 0.95914 1.22259 0.95940 0.98974 1.01295 1.21354 0.96732 0.88822 0.95923 1.21145 0.88690 1.02972 0.89557 1.63350 1.17234 1.33681 1.12490 1.22766 0.96936 0.90627 0.97226 1.22649 0.94669 0.95520 1.02178 1.21584 0.99417 0.96484 0.93186 1.22594 0.89988 1.06314 0.94770 1.22450 0.92725 0.94137 0.93697 1.48838 1.17553 1.47739 1.21657 1.21317 1.01053 0.94282 0.81259 1.19193 0.93672 0.95077 0.93283 1.21583 1.41748 1.02910 0.92073 0.91592 1.26050 0.94425 0.95706 1.03727 1.70127 1.43265 1.15518 1.28379 0.85303 0.77965 0.79001 0.78197 1.18263 1.19608 1.20759 1.21061 0.81820 0.80743 0.86475 1.90681 1.33197 1.45414 1.75970 1.22667 0.86468 0.99711 0.95868 1.67416 1.09211 1.32531 1.11899 1.22995 0.89571 0.98884 0.96604 0.90695 0.89767 0.90256 0.82177 0.82644 0.89769 0.89468 0.89615 0.95258 0.85406 0.93050 0.87329 0.85250 0.88298 0.91539 0.93511 0.89044 0.98079 1.01350 0.92665 0.92156 0.88004 0.82037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 10.04 71.24 0.72 -0.47 16 2 C -0.14 -2.60 5.90 -19.77 -0.12 -2.72 16 3 C -0.08 -1.38 9.86 22.47 0.22 -1.16 16 4 C -0.16 -3.00 8.78 22.36 0.20 -2.80 16 5 C 0.11 2.60 5.93 42.55 0.25 2.85 16 6 C 0.10 2.13 4.91 85.56 0.42 2.55 16 7 N -0.54 -14.55 5.15 -891.47 -4.60 -19.14 16 8 C 0.05 1.35 6.30 86.72 0.55 1.89 16 9 C -0.11 -2.58 5.96 31.45 0.19 -2.40 16 10 C -0.10 -2.62 0.68 -52.66 -0.04 -2.65 16 11 C -0.10 -1.61 6.26 31.28 0.20 -1.41 16 12 C 0.09 2.27 7.37 86.91 0.64 2.91 16 13 N -0.63 -23.72 2.95 -818.19 -2.41 -26.14 16 14 C 0.14 6.48 5.88 86.38 0.51 6.99 16 15 C 0.03 1.46 5.30 29.85 0.16 1.62 16 16 C -0.54 -32.43 9.11 25.60 0.23 -32.20 16 17 H 0.07 3.72 7.74 -2.91 -0.02 3.70 16 18 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 19 N -0.93 -59.04 13.29 21.45 0.28 -58.75 16 20 Si 0.97 45.72 29.54 68.60 2.03 47.75 16 21 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 22 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 23 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 24 C 0.51 20.43 6.73 87.37 0.59 21.01 16 25 O -0.57 -29.75 17.51 -3.01 -0.05 -29.80 16 26 C 0.08 1.84 5.54 86.22 0.48 2.32 16 27 N -0.50 -14.04 10.27 -183.88 -1.89 -15.93 16 28 C 0.08 1.75 10.86 84.67 0.92 2.67 16 29 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.08 0.65 8.10 -2.39 -0.02 0.64 16 31 H 0.08 0.73 8.09 -2.39 -0.02 0.71 16 32 H 0.16 1.62 8.06 -2.91 -0.02 1.59 16 33 H 0.16 1.90 7.28 -2.91 -0.02 1.88 16 34 H 0.08 1.11 7.86 -2.39 -0.02 1.09 16 35 H 0.09 1.80 8.07 -2.39 -0.02 1.78 16 36 H 0.09 1.60 5.79 -2.39 -0.01 1.59 16 37 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.13 1.71 7.75 -2.39 -0.02 1.69 16 39 H 0.05 1.52 8.01 -2.39 -0.02 1.50 16 40 H 0.11 1.29 7.97 -2.39 -0.02 1.27 16 41 H 0.13 1.15 7.62 -2.39 -0.02 1.13 16 42 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.05 2.30 7.96 -2.39 -0.02 2.28 16 45 H 0.09 3.61 8.14 -2.39 -0.02 3.59 16 46 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 47 H -0.03 -2.12 8.14 -2.39 -0.02 -2.14 16 48 H 0.26 15.58 8.31 -92.70 -0.77 14.81 16 49 H 0.06 1.68 8.01 -2.39 -0.02 1.66 16 50 H 0.10 1.40 7.70 -2.38 -0.02 1.38 16 51 H 0.16 3.05 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -89.41 410.26 0.83 -88.58 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 0.90 Total: 14.03 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: 6.57 Total: -0.60 kcal Atomic # 7 Polarization: -111.34 SS G_CDS: -8.61 Total: -119.96 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -0.05 Total: -29.80 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -89.41 0.83 -88.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273231793.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.609 kcal (2) G-P(sol) polarization free energy of solvation -89.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds