Wall clock time and date at job start Wed Apr 1 2020 02:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38673 * 120.41976 * 2 1 4 4 C 1.38627 * 118.42284 * 180.02562 * 3 2 1 5 5 C 1.38229 * 119.16047 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.61849 * 179.97438 * 5 4 3 7 7 N 1.46905 * 109.47091 * 94.99614 * 6 5 4 8 8 C 1.47657 * 110.99559 * 69.43765 * 7 6 5 9 9 C 1.54523 * 107.05715 * 123.12161 * 8 7 6 10 10 C 1.54838 * 102.59520 * 22.98691 * 9 8 7 11 11 H 1.09000 * 111.04928 * 80.45181 * 10 9 8 12 12 C 1.48268 * 110.99817 * 189.99893 * 7 6 5 13 13 H 1.09004 * 111.35495 * 91.92825 * 12 7 6 14 14 C 1.53121 * 108.11533 * 329.41693 * 12 7 6 15 15 C 1.52889 * 109.32988 * 182.70162 * 14 12 7 16 16 C 1.50341 * 109.31071 * 52.85314 * 15 14 12 17 17 O 1.21283 * 118.80380 * 158.34063 * 16 15 14 18 18 N 1.33354 * 122.39753 * 338.35594 * 16 15 14 19 19 C 1.46497 * 117.28978 * 179.47632 * 18 16 15 20 20 C 1.53002 * 109.47013 * 90.00371 * 19 18 16 21 21 C 1.50696 * 109.47119 * 180.02562 * 20 19 18 22 22 H 1.07997 * 120.00485 * 359.97438 * 21 20 19 23 23 C 1.37877 * 119.99994 * 180.02562 * 21 20 19 24 24 N 1.31519 * 120.00153 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00154 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47692 * 89.99496 * 25 23 21 27 27 H 1.48504 * 109.46961 * 209.99575 * 25 23 21 28 28 H 1.48497 * 109.46997 * 329.99054 * 25 23 21 29 29 N 1.31855 * 120.76389 * 0.25426 * 5 4 3 30 30 C 1.31883 * 121.72219 * 359.47886 * 29 5 4 31 31 H 1.09003 * 109.47086 * 89.99876 * 1 2 3 32 32 H 1.08997 * 109.46745 * 209.99951 * 1 2 3 33 33 H 1.08997 * 109.47010 * 330.00029 * 1 2 3 34 34 H 1.07998 * 120.78900 * 0.02562 * 3 2 1 35 35 H 1.08000 * 120.41898 * 179.97438 * 4 3 2 36 36 H 1.09004 * 109.46757 * 335.00388 * 6 5 4 37 37 H 1.08994 * 109.47235 * 214.99782 * 6 5 4 38 38 H 1.09006 * 109.91588 * 242.47336 * 8 7 6 39 39 H 1.09000 * 109.92302 * 3.56842 * 8 7 6 40 40 H 1.09000 * 110.78381 * 141.26636 * 9 8 7 41 41 H 1.08991 * 110.78442 * 264.72062 * 9 8 7 42 42 H 1.08997 * 109.49822 * 62.74859 * 14 12 7 43 43 H 1.08999 * 109.49632 * 302.65534 * 14 12 7 44 44 H 1.09000 * 109.50242 * 292.89687 * 15 14 12 45 45 H 1.09007 * 109.52612 * 172.81614 * 15 14 12 46 46 H 1.08993 * 109.47200 * 210.00339 * 19 18 16 47 47 H 1.09004 * 109.47469 * 330.00329 * 19 18 16 48 48 H 1.09002 * 109.46867 * 299.99976 * 20 19 18 49 49 H 1.08998 * 109.47325 * 59.99977 * 20 19 18 50 50 H 0.97003 * 120.00095 * 180.02562 * 24 23 21 51 51 H 1.08004 * 119.61368 * 180.26542 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5945 1.1475 -0.0005 5 6 4.2256 -0.0823 -0.0005 6 6 5.7312 -0.1469 -0.0017 7 7 6.2164 -0.2878 1.3777 8 6 5.8794 -1.6176 1.9238 9 6 7.2059 -2.2756 2.3656 10 6 8.1326 -1.0543 2.5832 11 1 7.9477 -0.5903 3.5520 12 6 7.6875 -0.1152 1.4438 13 1 7.9570 0.9225 1.6404 14 6 8.2839 -0.6024 0.1203 15 6 9.8080 -0.4995 0.1837 16 6 10.3034 -1.2090 1.4131 17 8 11.4563 -1.5842 1.4466 18 7 9.5214 -1.4412 2.4681 19 6 10.1168 -2.1523 3.6020 20 6 10.7287 -1.1412 4.5737 21 6 11.3417 -1.8728 5.7399 22 1 11.2989 -2.9510 5.7839 23 6 11.9564 -1.1655 6.7513 24 7 12.0082 0.1476 6.6981 25 14 12.7169 -2.0723 8.1965 26 1 14.1357 -2.3876 7.8920 27 1 12.6490 -1.2171 9.4087 28 1 11.9705 -3.3332 8.4380 29 7 3.5255 -1.1996 -0.0050 30 6 2.2067 -1.1916 0.0005 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 1.6890 2.1423 0.0004 35 1 4.1735 2.0592 -0.0010 36 1 6.1337 0.7680 -0.4367 37 1 6.0577 -1.0037 -0.5910 38 1 5.2150 -1.5094 2.7812 39 1 5.3986 -2.2235 1.1559 40 1 7.0721 -2.8300 3.2945 41 1 7.5970 -2.9226 1.5805 42 1 7.9113 0.0161 -0.6962 43 1 7.9961 -1.6401 -0.0483 44 1 10.1005 0.5496 0.2264 45 1 10.2416 -0.9623 -0.7029 46 1 9.3465 -2.7285 4.1145 47 1 10.8943 -2.8256 3.2410 48 1 11.4990 -0.5650 4.0612 49 1 9.9512 -0.4679 4.9348 50 1 12.4410 0.6452 7.4095 51 1 1.6673 -2.1273 0.0009 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273232289.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:04 Heat of formation + Delta-G solvation = -16.063862 kcal Electronic energy + Delta-G solvation = -30304.406358 eV Core-core repulsion = 26395.319049 eV Total energy + Delta-G solvation = -3909.087310 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.24355 -41.13293 -39.70804 -36.93752 -35.51645 -34.64757 -34.31508 -33.27275 -32.20767 -30.92564 -29.39727 -28.43721 -26.97090 -25.90812 -24.91933 -24.26080 -23.35043 -22.71620 -22.41366 -21.03637 -19.25996 -18.63714 -17.94662 -17.73558 -17.42180 -17.01516 -16.86690 -16.57888 -16.14889 -15.94700 -15.83046 -15.15742 -14.94020 -14.89518 -14.70183 -14.45922 -14.25759 -14.16165 -13.86462 -13.62695 -13.51604 -13.48785 -13.31282 -13.09172 -12.95256 -12.81375 -12.75382 -12.68262 -12.47343 -12.28124 -12.16035 -11.92651 -11.88681 -11.82659 -11.55258 -11.41345 -10.61368 -10.60702 -10.58349 -10.28618 -9.69059 -9.62438 -9.29618 -8.23858 -6.36173 0.20760 0.44307 1.37350 1.40297 1.50864 1.65879 2.02259 2.39779 2.70069 3.09255 3.12484 3.34292 3.46894 3.52466 3.66354 3.80853 3.86084 4.01441 4.08445 4.11084 4.16139 4.18011 4.23648 4.32484 4.39684 4.45064 4.49049 4.56540 4.64800 4.73469 4.76870 4.79246 4.83638 4.85643 4.87227 4.88516 4.91925 4.96453 5.00503 5.11016 5.24224 5.24476 5.28622 5.32012 5.44082 5.46755 5.56746 5.79618 5.81587 5.89249 6.01431 6.16148 6.60962 6.78708 7.13079 7.22658 7.32938 8.88409 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016707 B = 0.002337 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.577406 B =11975.959145 C =12862.808192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.143 4.143 3 C -0.085 4.085 4 C -0.154 4.154 5 C 0.111 3.889 6 C 0.099 3.901 7 N -0.516 5.516 8 C 0.055 3.945 9 C -0.145 4.145 10 C 0.134 3.866 11 H 0.080 0.920 12 C 0.075 3.925 13 H 0.110 0.890 14 C -0.136 4.136 15 C -0.121 4.121 16 C 0.498 3.502 17 O -0.605 6.605 18 N -0.586 5.586 19 C 0.125 3.875 20 C 0.030 3.970 21 C -0.544 4.544 22 H 0.063 0.937 23 C -0.001 4.001 24 N -0.932 5.932 25 Si 0.970 3.030 26 H -0.276 1.276 27 H -0.278 1.278 28 H -0.259 1.259 29 N -0.500 5.500 30 C 0.081 3.919 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.155 0.845 35 H 0.150 0.850 36 H 0.113 0.887 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.116 0.884 43 H 0.070 0.930 44 H 0.113 0.887 45 H 0.113 0.887 46 H 0.079 0.921 47 H 0.055 0.945 48 H -0.024 1.024 49 H -0.003 1.003 50 H 0.264 0.736 51 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.050 2.248 -18.809 32.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.145 4.145 3 C -0.111 4.111 4 C -0.174 4.174 5 C -0.027 4.027 6 C -0.029 4.029 7 N -0.240 5.240 8 C -0.073 4.073 9 C -0.184 4.184 10 C 0.029 3.971 11 H 0.098 0.902 12 C -0.033 4.033 13 H 0.128 0.872 14 C -0.175 4.175 15 C -0.161 4.161 16 C 0.288 3.712 17 O -0.487 6.487 18 N -0.315 5.315 19 C 0.002 3.998 20 C -0.008 4.008 21 C -0.582 4.582 22 H 0.081 0.919 23 C -0.199 4.199 24 N -0.572 5.572 25 Si 0.794 3.206 26 H -0.201 1.201 27 H -0.203 1.203 28 H -0.183 1.183 29 N -0.209 5.209 30 C -0.076 4.076 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.172 0.828 35 H 0.168 0.832 36 H 0.131 0.869 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.134 0.866 43 H 0.089 0.911 44 H 0.131 0.869 45 H 0.131 0.869 46 H 0.098 0.902 47 H 0.073 0.927 48 H -0.006 1.006 49 H 0.015 0.985 50 H 0.073 0.927 51 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -25.256 1.808 -18.448 31.328 hybrid contribution 0.813 -0.111 0.768 1.124 sum -24.443 1.696 -17.680 30.215 Atomic orbital electron populations 1.20761 0.88442 1.03933 1.03333 1.21239 0.98953 0.93953 1.00336 1.21835 0.93994 0.99192 0.96102 1.22178 0.95660 0.99232 1.00303 1.21195 0.96253 0.88948 0.96262 1.21261 0.88599 1.03482 0.89530 1.63855 1.10516 1.29909 1.19737 1.22773 0.95539 0.88640 1.00320 1.23164 0.95459 0.97340 1.02477 1.21723 0.79142 0.95965 1.00230 0.90197 1.22813 0.87169 0.99828 0.93488 0.87180 1.22286 0.93215 1.03221 0.98765 1.21613 0.97590 1.02584 0.94325 1.21135 0.85093 0.79369 0.85599 1.90703 1.20260 1.54360 1.83356 1.47107 1.11610 1.56382 1.16445 1.21443 0.97283 0.94892 0.86152 1.19109 0.94093 0.94366 0.93234 1.21535 1.36946 0.93759 1.05985 0.91897 1.26023 0.96460 0.95737 1.01634 1.70116 1.44826 1.07495 1.34727 0.85375 0.78696 0.78704 0.77829 1.20147 1.20317 1.18274 1.67415 1.09153 1.31853 1.12480 1.22950 0.89498 0.98691 0.96490 0.89991 0.90525 0.90499 0.82751 0.83210 0.86892 0.92158 0.91351 0.90432 0.90398 0.90903 0.86575 0.91148 0.86870 0.86901 0.90222 0.92682 1.00555 0.98489 0.92690 0.81715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 10.04 71.24 0.72 0.00 16 2 C -0.14 -1.79 5.90 -19.77 -0.12 -1.90 16 3 C -0.09 -1.05 9.86 22.47 0.22 -0.83 16 4 C -0.15 -2.21 9.72 22.36 0.22 -2.00 16 5 C 0.11 1.96 5.93 42.55 0.25 2.21 16 6 C 0.10 1.56 3.68 85.56 0.31 1.87 16 7 N -0.52 -10.29 5.15 -864.21 -4.45 -14.74 16 8 C 0.06 1.20 6.28 86.68 0.54 1.74 16 9 C -0.15 -3.58 5.79 31.74 0.18 -3.40 16 10 C 0.13 3.94 3.16 46.38 0.15 4.08 16 11 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 12 C 0.08 1.64 3.49 45.10 0.16 1.80 16 13 H 0.11 2.38 8.14 -2.38 -0.02 2.36 16 14 C -0.14 -2.46 3.87 30.60 0.12 -2.34 16 15 C -0.12 -2.90 6.08 29.70 0.18 -2.72 16 16 C 0.50 18.81 7.47 87.76 0.66 19.47 16 17 O -0.60 -29.48 16.21 -3.04 -0.05 -29.53 16 18 N -0.59 -21.87 2.48 -798.86 -1.98 -23.85 16 19 C 0.13 5.71 5.02 86.38 0.43 6.14 16 20 C 0.03 1.70 5.28 29.85 0.16 1.85 16 21 C -0.54 -32.53 9.11 25.60 0.23 -32.30 16 22 H 0.06 3.58 7.74 -2.91 -0.02 3.56 16 23 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 24 N -0.93 -58.91 13.29 21.45 0.28 -58.62 16 25 Si 0.97 45.90 29.54 68.60 2.03 47.92 16 26 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 27 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 28 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 29 N -0.50 -9.74 9.05 -183.88 -1.66 -11.40 16 30 C 0.08 1.27 10.86 84.67 0.92 2.19 16 31 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.08 0.42 8.09 -2.39 -0.02 0.40 16 33 H 0.08 0.39 8.10 -2.39 -0.02 0.37 16 34 H 0.15 1.10 8.06 -2.91 -0.02 1.08 16 35 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 36 H 0.11 1.26 7.20 -2.38 -0.02 1.24 16 37 H 0.06 0.96 6.73 -2.39 -0.02 0.95 16 38 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 39 H 0.08 1.67 6.42 -2.39 -0.02 1.66 16 40 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.07 1.80 7.38 -2.39 -0.02 1.78 16 42 H 0.12 1.33 6.38 -2.39 -0.02 1.32 16 43 H 0.07 1.34 6.53 -2.39 -0.02 1.32 16 44 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 45 H 0.11 2.40 8.14 -2.38 -0.02 2.38 16 46 H 0.08 3.30 7.78 -2.39 -0.02 3.28 16 47 H 0.05 2.73 7.15 -2.38 -0.02 2.71 16 48 H -0.02 -1.56 8.14 -2.39 -0.02 -1.58 16 49 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 50 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 51 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -79.84 399.27 0.87 -78.96 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 0.91 Total: 14.97 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: 5.80 Total: -3.70 kcal Atomic # 7 Polarization: -100.81 SS G_CDS: -7.81 Total: -108.62 kcal Atomic # 8 Polarization: -29.48 SS G_CDS: -0.05 Total: -29.53 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.92 kcal Total: -79.84 0.87 -78.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273232289.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.900 kcal (2) G-P(sol) polarization free energy of solvation -79.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds