Wall clock time and date at job start Wed Apr 1 2020 02:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38234 * 119.61409 * 2 1 4 4 C 1.38632 * 119.15604 * 179.70370 * 3 2 1 5 5 C 1.38666 * 118.42069 * 0.51119 * 4 3 2 6 6 C 1.50706 * 120.41752 * 179.78467 * 5 4 3 7 7 N 1.46901 * 109.46692 * 269.71950 * 6 5 4 8 8 C 1.48621 * 111.00570 * 307.44573 * 7 6 5 9 9 C 1.55160 * 103.36432 * 200.85246 * 8 7 6 10 10 C 1.53611 * 102.66049 * 36.57977 * 9 8 7 11 11 C 1.53623 * 110.83184 * 99.47933 * 10 9 8 12 12 C 1.54858 * 101.44430 * 96.71423 * 11 10 9 13 13 N 1.46873 * 105.43975 * 24.83705 * 12 11 10 14 14 C 1.46500 * 124.37203 * 163.09989 * 13 12 11 15 15 C 1.52997 * 109.47473 * 269.72291 * 14 13 12 16 16 C 1.50701 * 109.47212 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99913 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99734 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47094 * 90.00289 * 20 18 16 22 22 H 1.48505 * 109.47195 * 210.00171 * 20 18 16 23 23 H 1.48493 * 109.47449 * 330.00136 * 20 18 16 24 24 C 1.34754 * 111.25757 * 342.83453 * 13 12 11 25 25 O 1.21283 * 125.13391 * 181.25056 * 24 13 12 26 26 C 1.48188 * 110.99952 * 189.99644 * 7 6 5 27 27 C 1.38184 * 119.16525 * 359.51197 * 5 4 3 28 28 N 1.31849 * 119.62149 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.46886 * 270.02012 * 1 2 3 30 30 H 1.09000 * 109.47021 * 30.02230 * 1 2 3 31 31 H 1.08994 * 109.46636 * 150.02398 * 1 2 3 32 32 H 1.07995 * 120.42075 * 359.97438 * 3 2 1 33 33 H 1.08000 * 120.78414 * 180.27343 * 4 3 2 34 34 H 1.08996 * 109.47015 * 149.72276 * 6 5 4 35 35 H 1.08996 * 109.46817 * 29.72089 * 6 5 4 36 36 H 1.09000 * 110.64451 * 319.32354 * 8 7 6 37 37 H 1.09004 * 110.64178 * 82.22228 * 8 7 6 38 38 H 1.08999 * 110.77425 * 278.28803 * 9 8 7 39 39 H 1.08995 * 110.77329 * 154.87485 * 9 8 7 40 40 H 1.08998 * 111.01686 * 214.96194 * 11 10 9 41 41 H 1.09002 * 111.01734 * 338.80389 * 11 10 9 42 42 H 1.08996 * 110.36859 * 265.79395 * 12 11 10 43 43 H 1.09006 * 110.17795 * 143.76879 * 12 11 10 44 44 H 1.09002 * 109.47129 * 149.72034 * 14 13 12 45 45 H 1.08998 * 109.46845 * 29.72841 * 14 13 12 46 46 H 1.09002 * 109.47153 * 59.99757 * 15 14 13 47 47 H 1.09001 * 109.46832 * 299.99948 * 15 14 13 48 48 H 0.97002 * 119.99768 * 179.97438 * 19 18 16 49 49 H 1.09007 * 110.01539 * 26.35108 * 26 7 6 50 50 H 1.09001 * 110.02373 * 264.95746 * 26 7 6 51 51 H 1.08000 * 119.61502 * 180.25260 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2018 0.0000 4 6 3.5764 1.1907 0.0063 5 6 4.2266 -0.0340 0.0014 6 6 5.7323 -0.0986 0.0030 7 7 6.2229 -0.1199 -1.3815 8 6 5.5593 -1.1942 -2.1653 9 6 6.5334 -1.4275 -3.3503 10 6 7.9106 -1.2439 -2.6952 11 6 8.5444 -2.6039 -2.3654 12 6 9.4638 -2.8201 -3.5926 13 7 9.7534 -1.4748 -4.1060 14 6 10.8486 -1.1588 -5.0263 15 6 12.1017 -0.8018 -4.2243 16 6 13.2285 -0.4774 -5.1710 17 1 13.0669 -0.5210 -6.2380 18 6 14.4655 -0.1239 -4.6750 19 7 14.6621 -0.0703 -3.3758 20 14 15.8619 0.2790 -5.8485 21 1 15.8461 1.7316 -6.1565 22 1 17.1576 -0.0792 -5.2175 23 1 15.6922 -0.4952 -7.1043 24 6 8.8781 -0.5697 -3.6259 25 8 8.8721 0.6109 -3.9035 26 6 7.6728 -0.4224 -1.4265 27 6 3.4767 -1.1947 0.0009 28 7 2.1587 -1.1462 0.0005 29 1 -0.3633 0.0004 1.0276 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3632 -0.8902 -0.5134 32 1 1.6507 2.1374 -0.0004 33 1 4.1365 2.1141 0.0108 34 1 6.0566 -1.0031 0.5174 35 1 6.1328 0.7752 0.5170 36 1 5.4581 -2.0998 -1.5671 37 1 4.5854 -0.8619 -2.5249 38 1 6.3753 -0.6850 -4.1326 39 1 6.4253 -2.4371 -3.7466 40 1 9.1231 -2.5521 -1.4432 41 1 7.7858 -3.3843 -2.3050 42 1 8.9510 -3.4110 -4.3514 43 1 10.3866 -3.3143 -3.2886 44 1 10.5646 -0.3129 -5.6522 45 1 11.0547 -2.0240 -5.6564 46 1 12.3858 -1.6478 -3.5984 47 1 11.8956 0.0633 -3.5942 48 1 15.5325 0.1781 -3.0269 49 1 7.9609 -1.0004 -0.5483 50 1 8.2462 0.5037 -1.4688 51 1 3.9756 -2.1525 0.0013 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273259780.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:08 Heat of formation + Delta-G solvation = 3.530493 kcal Electronic energy + Delta-G solvation = -29740.782986 eV Core-core repulsion = 25832.545352 eV Total energy + Delta-G solvation = -3908.237635 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.10580 -40.49324 -38.09603 -35.99161 -34.73016 -33.44951 -32.60429 -32.20820 -30.62364 -29.26082 -28.65750 -27.73063 -25.44040 -24.88985 -23.81982 -23.24514 -22.17201 -21.81555 -20.93333 -20.16873 -18.59998 -17.01697 -16.73290 -16.48673 -16.42262 -16.01377 -15.50162 -15.40090 -14.92680 -14.65450 -14.52247 -14.42066 -14.31341 -13.61322 -13.54361 -13.47948 -13.25546 -12.81773 -12.69044 -12.63832 -12.57480 -12.35868 -12.24571 -12.13126 -11.91684 -11.87265 -11.58719 -11.43270 -11.28256 -10.99440 -10.94570 -10.71896 -10.65025 -10.07708 -9.99687 -9.87564 -9.72745 -9.34033 -9.17333 -9.06636 -8.54659 -8.38094 -8.00991 -6.03283 -4.06697 0.75144 1.01136 2.98480 3.31429 3.37014 3.37660 3.39738 3.55462 3.90199 3.96051 4.28652 4.32351 4.40341 4.42266 4.44968 4.58549 4.63098 4.70575 4.81781 4.96037 5.02708 5.09003 5.19090 5.21076 5.23494 5.29618 5.31967 5.33041 5.38894 5.43284 5.48885 5.64144 5.66872 5.69936 5.72336 5.80560 5.83698 5.90098 5.95825 6.01676 6.08390 6.11383 6.39717 6.46707 6.64406 6.78726 6.80602 7.01481 7.50267 7.66273 7.68366 7.84801 7.96610 8.32931 8.69542 9.00025 9.57405 11.08109 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.028238 B = 0.001938 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.336168 B =14446.381667 C =14747.666282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.122 3.878 3 C -0.172 4.172 4 C -0.051 4.051 5 C -0.137 4.137 6 C 0.088 3.912 7 N -0.506 5.506 8 C 0.040 3.960 9 C -0.099 4.099 10 C -0.106 4.106 11 C -0.123 4.123 12 C 0.103 3.897 13 N -0.612 5.612 14 C 0.128 3.872 15 C 0.012 3.988 16 C -0.522 4.522 17 H 0.057 0.943 18 C 0.059 3.941 19 N -0.893 5.893 20 Si 0.895 3.105 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.527 3.473 25 O -0.522 6.522 26 C 0.060 3.940 27 C 0.110 3.890 28 N -0.486 5.486 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.134 0.866 33 H 0.137 0.863 34 H 0.049 0.951 35 H 0.089 0.911 36 H 0.047 0.953 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.066 0.934 43 H 0.081 0.919 44 H 0.070 0.930 45 H 0.065 0.935 46 H 0.017 0.983 47 H 0.020 0.980 48 H 0.261 0.739 49 H 0.056 0.944 50 H 0.093 0.907 51 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.161 -5.061 9.095 28.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.016 4.016 3 C -0.192 4.192 4 C -0.077 4.077 5 C -0.139 4.139 6 C -0.040 4.040 7 N -0.230 5.230 8 C -0.088 4.088 9 C -0.138 4.138 10 C -0.110 4.110 11 C -0.161 4.161 12 C -0.021 4.021 13 N -0.345 5.345 14 C 0.008 3.992 15 C -0.026 4.026 16 C -0.561 4.561 17 H 0.075 0.925 18 C -0.143 4.143 19 N -0.532 5.532 20 Si 0.723 3.277 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.198 1.198 24 C 0.313 3.687 25 O -0.398 6.398 26 C -0.068 4.068 27 C -0.048 4.048 28 N -0.195 5.195 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.152 0.848 33 H 0.155 0.845 34 H 0.067 0.933 35 H 0.107 0.893 36 H 0.065 0.935 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.084 0.916 43 H 0.099 0.901 44 H 0.089 0.911 45 H 0.083 0.917 46 H 0.035 0.965 47 H 0.039 0.961 48 H 0.071 0.929 49 H 0.074 0.926 50 H 0.111 0.889 51 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -26.528 -4.641 8.798 28.331 hybrid contribution 1.713 0.193 -0.149 1.730 sum -24.814 -4.448 8.649 26.652 Atomic orbital electron populations 1.20708 0.88928 1.03474 1.02998 1.21308 0.97022 0.88448 0.94827 1.21978 0.94886 0.99274 1.03082 1.21521 0.94116 0.98147 0.93939 1.20751 0.96575 0.94344 1.02209 1.21181 0.89925 1.02265 0.90610 1.65034 1.03586 1.44090 1.10307 1.23293 0.98212 0.92902 0.94407 1.22330 0.91104 1.02463 0.97853 1.21513 0.96486 0.96418 0.96566 1.22751 0.98952 0.95570 0.98832 1.22075 0.99704 0.85303 0.95036 1.48631 1.30552 1.08052 1.47296 1.21798 0.86136 1.00079 0.91213 1.19400 0.90267 0.97165 0.95722 1.21091 0.95273 1.46791 0.92973 0.92475 1.25001 0.98800 0.95364 0.95111 1.69972 1.23466 1.48178 1.11538 0.86546 0.81430 0.78793 0.80947 1.20571 1.21210 1.19817 1.20087 0.81409 0.86062 0.81154 1.90709 1.72917 1.14767 1.61417 1.22742 0.88999 1.00195 0.94844 1.22639 0.89276 0.97824 0.95075 1.67522 1.09706 1.29428 1.12884 0.90492 0.90725 0.90505 0.84822 0.84500 0.93254 0.89293 0.93459 0.90154 0.90051 0.90175 0.89757 0.89519 0.91601 0.90073 0.91147 0.91665 0.96489 0.96113 0.92943 0.92626 0.88853 0.83171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.62 10.17 36.01 0.37 -0.25 16 2 C 0.12 1.08 6.78 -82.58 -0.56 0.52 16 3 C -0.17 -1.38 9.75 -39.44 -0.38 -1.76 16 4 C -0.05 -0.44 9.86 -39.28 -0.39 -0.83 16 5 C -0.14 -1.24 4.61 -104.48 -0.48 -1.72 16 6 C 0.09 0.80 5.21 -4.97 -0.03 0.77 16 7 N -0.51 -5.73 5.40 -232.05 -1.25 -6.98 16 8 C 0.04 0.39 5.00 -1.73 -0.01 0.39 16 9 C -0.10 -1.12 6.11 -25.27 -0.15 -1.27 16 10 C -0.11 -1.39 0.77 -155.25 -0.12 -1.51 16 11 C -0.12 -1.31 6.08 -25.43 -0.15 -1.47 16 12 C 0.10 1.34 7.37 -2.86 -0.02 1.32 16 13 N -0.61 -11.04 2.94 -172.44 -0.51 -11.55 16 14 C 0.13 2.71 5.89 -4.04 -0.02 2.69 16 15 C 0.01 0.32 5.30 -27.88 -0.15 0.18 16 16 C -0.52 -14.84 9.11 -34.44 -0.31 -15.16 16 17 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 20 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 24 C 0.53 9.78 6.63 -11.22 -0.07 9.71 16 25 O -0.52 -12.00 17.17 5.55 0.10 -11.91 16 26 C 0.06 0.76 6.01 -3.12 -0.02 0.74 16 27 C 0.11 1.02 9.53 -17.55 -0.17 0.85 16 28 N -0.49 -5.04 10.27 -9.47 -0.10 -5.14 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 33 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 34 H 0.05 0.39 7.77 -51.93 -0.40 -0.01 16 35 H 0.09 0.77 8.09 -51.93 -0.42 0.35 16 36 H 0.05 0.39 7.06 -51.93 -0.37 0.03 16 37 H 0.08 0.84 7.76 -51.93 -0.40 0.44 16 38 H 0.08 1.09 7.92 -51.93 -0.41 0.68 16 39 H 0.08 0.73 7.64 -51.93 -0.40 0.33 16 40 H 0.08 0.89 7.62 -51.93 -0.40 0.49 16 41 H 0.09 0.67 7.67 -51.93 -0.40 0.28 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.07 1.59 7.93 -51.93 -0.41 1.17 16 45 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 46 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 49 H 0.06 0.59 6.86 -51.93 -0.36 0.24 16 50 H 0.09 1.46 7.46 -51.93 -0.39 1.07 16 51 H 0.15 1.14 7.37 -52.49 -0.39 0.75 16 LS Contribution 407.96 15.07 6.15 6.15 Total: -1.00 -34.95 407.96 -11.18 -46.13 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -8.50 Total: -1.95 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -2.77 Total: -5.21 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: -1.12 Total: -49.93 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.10 Total: -11.91 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.95 -11.18 -46.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273259780.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.656 kcal (2) G-P(sol) polarization free energy of solvation -34.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds