Wall clock time and date at job start Wed Apr 1 2020 02:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38233 * 119.61552 * 2 1 4 4 C 1.38631 * 119.15599 * 179.74276 * 3 2 1 5 5 C 1.38674 * 118.41979 * 0.47229 * 4 3 2 6 6 C 1.50702 * 120.41791 * 179.78191 * 5 4 3 7 7 N 1.46900 * 109.46872 * 269.72536 * 6 5 4 8 8 C 1.48724 * 111.00534 * 60.00443 * 7 6 5 9 9 C 1.55005 * 103.35223 * 158.81668 * 8 7 6 10 10 C 1.54793 * 102.94349 * 323.04430 * 9 8 7 11 11 C 1.47081 * 110.99951 * 177.16573 * 7 6 5 12 12 C 1.53853 * 110.71491 * 93.71004 * 11 7 6 13 13 C 1.54651 * 101.58720 * 215.60609 * 12 11 7 14 14 N 1.46853 * 105.50226 * 24.75015 * 13 12 11 15 15 C 1.46503 * 124.36870 * 163.39668 * 14 13 12 16 16 C 1.53003 * 109.46944 * 269.72382 * 15 14 13 17 17 C 1.50701 * 109.46901 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00122 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99542 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00035 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99623 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47331 * 60.00455 * 21 19 17 23 23 H 1.48500 * 109.47302 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47670 * 300.00126 * 21 19 17 25 25 C 1.34663 * 111.26337 * 343.12898 * 14 13 12 26 26 O 1.21285 * 125.08025 * 180.82919 * 25 14 13 27 27 C 1.38174 * 119.16290 * 359.50578 * 5 4 3 28 28 N 1.31852 * 119.61691 * 179.97438 * 2 1 3 29 29 H 1.08995 * 109.47578 * 270.02959 * 1 2 3 30 30 H 1.09008 * 109.46912 * 30.02559 * 1 2 3 31 31 H 1.09002 * 109.46942 * 150.02078 * 1 2 3 32 32 H 1.07997 * 120.41899 * 359.97438 * 3 2 1 33 33 H 1.08001 * 120.78606 * 180.22663 * 4 3 2 34 34 H 1.08990 * 109.47518 * 149.71939 * 6 5 4 35 35 H 1.09004 * 109.46921 * 29.71579 * 6 5 4 36 36 H 1.08993 * 110.64194 * 40.35144 * 8 7 6 37 37 H 1.08998 * 110.78077 * 277.34635 * 8 7 6 38 38 H 1.09002 * 110.71939 * 204.67452 * 9 8 7 39 39 H 1.09001 * 110.86745 * 81.48083 * 9 8 7 40 40 H 1.09002 * 110.37318 * 263.05892 * 10 9 8 41 41 H 1.09004 * 110.37053 * 140.72485 * 10 9 8 42 42 H 1.08991 * 111.00749 * 333.68463 * 12 11 7 43 43 H 1.09001 * 111.00045 * 97.49876 * 12 11 7 44 44 H 1.08997 * 110.24354 * 265.73951 * 13 12 11 45 45 H 1.09001 * 110.23557 * 143.75421 * 13 12 11 46 46 H 1.09003 * 109.47092 * 29.71814 * 15 14 13 47 47 H 1.08995 * 109.47237 * 149.72412 * 15 14 13 48 48 H 1.09000 * 109.46675 * 300.00157 * 16 15 14 49 49 H 1.09003 * 109.46839 * 59.99815 * 16 15 14 50 50 H 0.97006 * 119.99524 * 180.02562 * 20 19 17 51 51 H 1.08006 * 119.61375 * 180.25380 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2017 0.0000 4 6 3.5764 1.1906 0.0054 5 6 4.2266 -0.0342 0.0006 6 6 5.7322 -0.0988 0.0013 7 7 6.2219 -0.1205 -1.3835 8 6 5.7975 1.1008 -2.1183 9 6 6.8078 1.1823 -3.2911 10 6 8.1289 0.6995 -2.6448 11 6 7.6922 -0.1157 -1.4228 12 6 8.2392 -1.5513 -1.5059 13 6 9.5241 -1.4441 -0.6520 14 7 9.2934 -0.3205 0.2649 15 6 10.0771 -0.0674 1.4765 16 6 9.4287 -0.7844 2.6624 17 6 10.2352 -0.5245 3.9086 18 1 11.1214 0.0908 3.8598 19 6 9.8411 -1.0716 5.1113 20 7 8.7617 -1.8205 5.1708 21 14 10.8413 -0.7501 6.6559 22 1 10.8842 0.7101 6.9229 23 1 10.2119 -1.4459 7.8070 24 1 12.2232 -1.2594 6.4659 25 6 8.2722 0.4506 -0.1548 26 8 7.8784 1.4515 0.4057 27 6 3.4766 -1.1947 0.0011 28 7 2.1586 -1.1463 0.0005 29 1 -0.3634 0.0005 1.0276 30 1 -0.3633 0.8898 -0.5143 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6507 2.1373 -0.0004 33 1 4.1366 2.1140 0.0092 34 1 6.0569 -1.0031 0.5158 35 1 6.1332 0.7752 0.5147 36 1 5.8779 1.9807 -1.4801 37 1 4.7802 0.9920 -2.4944 38 1 6.9045 2.2083 -3.6462 39 1 6.5121 0.5203 -4.1050 40 1 8.7339 1.5519 -2.3358 41 1 8.6845 0.0713 -3.3410 42 1 7.5381 -2.2624 -1.0693 43 1 8.4750 -1.8205 -2.5355 44 1 10.3845 -1.2404 -1.2892 45 1 9.6804 -2.3643 -0.0889 46 1 11.0919 -0.4402 1.3373 47 1 10.1074 1.0044 1.6724 48 1 8.4139 -0.4116 2.8016 49 1 9.3984 -1.8562 2.4665 50 1 8.4843 -2.2050 6.0171 51 1 3.9755 -2.1526 0.0015 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273261908.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:04:11 Heat of formation + Delta-G solvation = 9.830731 kcal Electronic energy + Delta-G solvation = -31034.036930 eV Core-core repulsion = 27126.072495 eV Total energy + Delta-G solvation = -3907.964436 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.35114 -40.14903 -37.59914 -36.24010 -34.32182 -33.54363 -32.29678 -31.84234 -31.48235 -29.11458 -28.17651 -27.74016 -25.16432 -24.79335 -23.64774 -23.23905 -21.87636 -21.65678 -20.88122 -20.28835 -18.65891 -16.85359 -16.67425 -16.39643 -16.04741 -15.98420 -15.36496 -15.15105 -15.10469 -14.61929 -14.44051 -14.40350 -14.13700 -13.74027 -13.24793 -13.14603 -12.94309 -12.80949 -12.72805 -12.52938 -12.37961 -12.27472 -12.09423 -12.01650 -11.74621 -11.70467 -11.33048 -11.21870 -11.10626 -11.01476 -10.94229 -10.75253 -10.59215 -10.08645 -9.91876 -9.82106 -9.76184 -9.40170 -9.27125 -8.82931 -8.40685 -8.29767 -7.95331 -6.05477 -4.09478 1.09833 1.30646 2.80717 3.30480 3.34912 3.36378 3.46636 3.64913 4.03629 4.27394 4.36284 4.41487 4.42807 4.59279 4.69928 4.81911 4.90930 4.95417 5.01964 5.08273 5.12074 5.18827 5.30611 5.32702 5.42873 5.45610 5.48214 5.57055 5.62885 5.66692 5.74130 5.75793 5.81269 5.84868 5.86400 5.92206 6.00731 6.01798 6.08759 6.10302 6.13254 6.36323 6.40196 6.73225 6.74747 6.81585 6.88405 6.92412 7.42595 7.61009 7.78068 7.92776 8.02008 8.28762 8.53780 8.96579 9.54852 11.05662 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.009266 B = 0.003499 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3020.927539 B = 8001.106055 C =10170.464519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.118 3.882 3 C -0.174 4.174 4 C -0.065 4.065 5 C -0.122 4.122 6 C 0.056 3.944 7 N -0.478 5.478 8 C 0.032 3.968 9 C -0.120 4.120 10 C -0.107 4.107 11 C 0.059 3.941 12 C -0.112 4.112 13 C 0.097 3.903 14 N -0.605 5.605 15 C 0.126 3.874 16 C 0.015 3.985 17 C -0.525 4.525 18 H 0.056 0.944 19 C 0.061 3.939 20 N -0.891 5.891 21 Si 0.895 3.105 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.276 1.276 25 C 0.501 3.499 26 O -0.530 6.530 27 C 0.123 3.877 28 N -0.487 5.487 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.054 0.946 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.068 0.932 45 H 0.083 0.917 46 H 0.066 0.934 47 H 0.070 0.930 48 H 0.019 0.981 49 H 0.017 0.983 50 H 0.262 0.738 51 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.870 3.308 -19.022 21.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.020 4.020 3 C -0.194 4.194 4 C -0.091 4.091 5 C -0.125 4.125 6 C -0.072 4.072 7 N -0.201 5.201 8 C -0.096 4.096 9 C -0.158 4.158 10 C -0.145 4.145 11 C -0.034 4.034 12 C -0.150 4.150 13 C -0.026 4.026 14 N -0.337 5.337 15 C 0.006 3.994 16 C -0.023 4.023 17 C -0.564 4.564 18 H 0.074 0.926 19 C -0.142 4.142 20 N -0.530 5.530 21 Si 0.722 3.278 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.202 1.202 25 C 0.286 3.714 26 O -0.408 6.408 27 C -0.035 4.035 28 N -0.196 5.196 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.072 0.928 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.101 0.899 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.086 0.914 45 H 0.101 0.899 46 H 0.085 0.915 47 H 0.088 0.912 48 H 0.037 0.963 49 H 0.036 0.964 50 H 0.072 0.928 51 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -9.810 2.473 -18.749 21.304 hybrid contribution 1.434 1.516 1.535 2.591 sum -8.376 3.989 -17.214 19.555 Atomic orbital electron populations 1.20681 0.89131 1.03145 1.02934 1.21265 0.96890 0.88538 0.95314 1.21886 0.94693 0.99138 1.03695 1.21555 0.94283 0.98060 0.95196 1.20709 0.96528 0.94100 1.01123 1.21727 0.90121 1.05161 0.90163 1.65065 1.04784 1.36930 1.13305 1.23329 0.99248 0.91997 0.94987 1.22508 0.94202 1.01358 0.97729 1.22259 0.98149 0.99426 0.94708 1.22090 0.89608 0.97103 0.94622 1.22613 0.96237 0.95092 1.01050 1.22164 0.97550 0.90979 0.91950 1.48651 1.33213 1.26892 1.24954 1.21844 0.93573 1.01219 0.82800 1.19373 0.96604 0.95502 0.90831 1.21032 1.10842 1.31584 0.92918 0.92569 1.24991 0.95099 0.94998 0.99062 1.69958 1.23722 1.33078 1.26212 0.86621 0.80211 0.78512 0.82449 1.20156 1.21206 1.20166 1.21011 0.80592 0.83497 0.86264 1.90621 1.62686 1.25599 1.61926 1.22650 0.88832 0.98213 0.93781 1.67538 1.09934 1.29257 1.12866 0.90572 0.90975 0.90631 0.85092 0.85060 0.89479 0.89002 0.92753 0.90135 0.90940 0.90569 0.91059 0.89927 0.89243 0.89141 0.91408 0.89882 0.91519 0.91206 0.96255 0.96448 0.92828 0.82693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.90 10.17 36.01 0.37 -0.53 16 2 C 0.12 1.45 6.78 -82.58 -0.56 0.89 16 3 C -0.17 -2.01 9.75 -39.44 -0.38 -2.39 16 4 C -0.06 -0.83 8.70 -39.28 -0.34 -1.17 16 5 C -0.12 -1.74 4.84 -104.48 -0.51 -2.25 16 6 C 0.06 0.87 4.19 -4.97 -0.02 0.85 16 7 N -0.48 -6.38 4.98 -218.20 -1.09 -7.46 16 8 C 0.03 0.38 5.13 -1.75 -0.01 0.37 16 9 C -0.12 -1.16 7.07 -24.73 -0.17 -1.34 16 10 C -0.11 -1.16 6.24 -25.66 -0.16 -1.32 16 11 C 0.06 0.79 0.76 -132.18 -0.10 0.69 16 12 C -0.11 -1.27 6.39 -25.42 -0.16 -1.43 16 13 C 0.10 1.26 7.36 -2.98 -0.02 1.24 16 14 N -0.60 -10.61 2.94 -172.49 -0.51 -11.11 16 15 C 0.13 2.61 5.88 -4.04 -0.02 2.58 16 16 C 0.01 0.38 5.30 -27.88 -0.15 0.23 16 17 C -0.53 -14.76 9.11 -34.44 -0.31 -15.07 16 18 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 20 N -0.89 -26.81 13.29 55.43 0.74 -26.08 16 21 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 C 0.50 8.86 5.46 -11.13 -0.06 8.80 16 26 O -0.53 -11.26 15.08 5.55 0.08 -11.17 16 27 C 0.12 1.75 10.86 -17.55 -0.19 1.56 16 28 N -0.49 -7.01 10.27 -9.47 -0.10 -7.10 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.48 8.08 -51.92 -0.42 0.06 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.13 1.58 7.68 -52.49 -0.40 1.18 16 34 H 0.09 1.47 8.09 -51.93 -0.42 1.05 16 35 H 0.09 1.71 4.98 -51.93 -0.26 1.45 16 36 H 0.05 0.72 7.58 -51.93 -0.39 0.33 16 37 H 0.08 0.91 7.79 -51.93 -0.40 0.51 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.85 7.73 -51.93 -0.40 0.45 16 41 H 0.08 0.71 7.29 -51.93 -0.38 0.33 16 42 H 0.09 1.08 8.10 -51.93 -0.42 0.65 16 43 H 0.09 0.77 7.41 -51.93 -0.38 0.39 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 46 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 47 H 0.07 1.53 7.93 -51.93 -0.41 1.12 16 48 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 49 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 51 H 0.16 2.02 8.06 -52.48 -0.42 1.60 16 LS Contribution 404.98 15.07 6.10 6.10 Total: -1.00 -33.49 404.98 -11.19 -44.68 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -8.49 Total: 2.17 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: -2.91 Total: -6.64 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: -0.96 Total: -51.76 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.08 Total: -11.17 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.49 -11.19 -44.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273261908.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.508 kcal (2) G-P(sol) polarization free energy of solvation -33.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds