Wall clock time and date at job start Wed Apr 1 2020 02:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37922 * 119.57660 * 2 1 4 4 C 1.39459 * 119.06256 * 179.97438 * 3 2 1 5 5 N 1.39174 * 120.86096 * 179.97438 * 4 3 2 6 6 C 1.46812 * 110.99817 * 304.70176 * 5 4 3 7 7 C 1.53264 * 109.43512 * 170.79649 * 6 5 4 8 8 C 1.53216 * 108.62811 * 55.59304 * 7 6 5 9 9 C 1.52769 * 117.79081 * 93.99194 * 8 7 6 10 10 C 1.52735 * 117.84353 * 162.99954 * 8 7 6 11 11 H 1.08995 * 117.50068 * 144.78909 * 10 8 7 12 12 C 1.50696 * 117.50607 * 359.72576 * 10 8 7 13 13 O 1.21280 * 120.00296 * 0.02562 * 12 10 8 14 14 N 1.34779 * 119.99811 * 180.02562 * 12 10 8 15 15 C 1.46506 * 119.99750 * 180.02562 * 14 12 10 16 16 C 1.52998 * 109.46918 * 180.02562 * 15 14 12 17 17 C 1.50701 * 109.47119 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99685 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99846 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00165 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99665 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47825 * 59.99637 * 21 19 17 23 23 H 1.48502 * 109.47496 * 179.97438 * 21 19 17 24 24 H 1.48508 * 109.47372 * 299.99648 * 21 19 17 25 25 C 1.53208 * 114.73351 * 308.58930 * 8 7 6 26 26 C 1.46803 * 110.99593 * 180.02562 * 5 4 3 27 27 C 1.39488 * 118.26924 * 0.26957 * 4 3 2 28 28 C 1.37871 * 119.06970 * 359.48168 * 27 4 3 29 29 N 1.31984 * 119.58089 * 180.02562 * 2 1 3 30 30 H 1.09008 * 109.46902 * 90.00638 * 1 2 3 31 31 H 1.09001 * 109.46812 * 210.00383 * 1 2 3 32 32 H 1.08999 * 109.47357 * 330.00618 * 1 2 3 33 33 H 1.08002 * 120.46572 * 0.02562 * 3 2 1 34 34 H 1.08997 * 109.47574 * 50.80966 * 6 5 4 35 35 H 1.08997 * 109.47881 * 290.78621 * 6 5 4 36 36 H 1.09001 * 109.61252 * 295.84521 * 7 6 5 37 37 H 1.09003 * 109.60947 * 175.33481 * 7 6 5 38 38 H 1.08998 * 117.50106 * 215.29018 * 9 8 7 39 39 H 1.08994 * 117.50859 * 0.33208 * 9 8 7 40 40 H 0.96996 * 120.00048 * 0.02562 * 14 12 10 41 41 H 1.08994 * 109.47056 * 299.99939 * 15 14 12 42 42 H 1.08998 * 109.47166 * 60.00391 * 15 14 12 43 43 H 1.09008 * 109.47044 * 299.99992 * 16 15 14 44 44 H 1.08996 * 109.47227 * 59.99409 * 16 15 14 45 45 H 0.97002 * 119.99488 * 180.02562 * 20 19 17 46 46 H 1.09004 * 109.61284 * 171.15561 * 25 8 7 47 47 H 1.09003 * 109.60847 * 291.48949 * 25 8 7 48 48 H 1.09002 * 109.47723 * 69.21762 * 26 5 4 49 49 H 1.09000 * 109.48795 * 309.19608 * 26 5 4 50 50 H 1.08004 * 120.46140 * 179.72198 * 27 4 3 51 51 H 1.08003 * 119.57606 * 180.24936 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1878 1.1995 0.0000 4 6 3.5823 1.1870 0.0005 5 7 4.3069 2.3752 0.0000 6 6 3.9150 3.2299 -1.1275 7 6 4.5584 4.6117 -0.9677 8 6 6.0743 4.4334 -0.8344 9 6 6.9181 4.5385 -2.1035 10 6 6.9592 5.6576 -1.0602 11 1 7.8598 5.7465 -0.4527 12 6 6.2763 6.9559 -1.4052 13 8 5.0676 7.0005 -1.4937 14 7 7.0089 8.0675 -1.6153 15 6 6.3449 9.3299 -1.9501 16 6 7.3966 10.4253 -2.1367 17 6 6.7136 11.7240 -2.4805 18 1 5.6372 11.7638 -2.5585 19 6 7.4631 12.8610 -2.6964 20 7 8.7739 12.8123 -2.6019 21 14 6.6165 14.4708 -3.1218 22 1 5.6955 14.8519 -2.0210 23 1 7.6371 15.5341 -3.3031 24 1 5.8436 14.3065 -4.3792 25 6 6.5095 3.4224 0.2313 26 6 5.7509 2.1107 0.0001 27 6 4.2319 -0.0474 -0.0047 28 6 3.4775 -1.2014 0.0007 29 7 2.1585 -1.1478 -0.0005 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5137 33 1 1.6484 2.1352 0.0004 34 1 2.8302 3.3339 -1.1448 35 1 4.2518 2.7779 -2.0604 36 1 4.1669 5.0963 -0.0732 37 1 4.3374 5.2217 -1.8437 38 1 7.7917 3.8914 -2.1822 39 1 6.3971 4.7409 -3.0392 40 1 7.9756 8.0318 -1.5449 41 1 5.7790 9.2089 -2.8738 42 1 5.6678 9.6095 -1.1431 43 1 7.9629 10.5464 -1.2132 44 1 8.0735 10.1455 -2.9439 45 1 9.3011 13.6123 -2.7534 46 1 7.5818 3.2440 0.1501 47 1 6.2777 3.8128 1.2222 48 1 6.0427 1.6862 -0.9604 49 1 5.9916 1.4068 0.7968 50 1 5.3107 -0.0984 -0.0090 51 1 3.9720 -2.1615 0.0008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273583725.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:15:56 Heat of formation + Delta-G solvation = 18.696023 kcal Electronic energy + Delta-G solvation = -28998.206900 eV Core-core repulsion = 25090.626892 eV Total energy + Delta-G solvation = -3907.580008 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.20422 -40.17636 -38.60966 -36.64297 -34.82441 -33.17334 -32.88371 -32.23086 -31.40439 -29.85233 -28.83160 -27.95303 -25.40611 -24.34740 -23.69573 -23.38843 -22.50567 -21.25440 -20.90695 -19.87874 -18.86987 -17.69415 -17.04776 -16.67654 -16.32545 -15.89064 -15.64873 -15.20995 -15.06751 -14.75761 -14.67741 -14.53938 -14.38670 -14.15110 -13.81402 -13.70738 -13.39950 -13.06856 -13.00533 -12.70495 -12.56590 -12.47343 -12.32049 -12.14716 -11.91249 -11.81857 -11.42545 -11.24280 -11.05110 -10.84927 -10.70456 -10.63363 -10.38167 -10.12335 -9.93390 -9.77108 -9.72083 -9.43167 -9.24554 -9.09058 -8.57139 -8.49075 -8.38120 -6.12083 -4.15182 0.85276 1.01353 2.72793 3.20315 3.28983 3.32981 3.35362 3.48473 3.55046 3.77195 4.04604 4.32272 4.35718 4.39141 4.51397 4.56024 4.69645 4.70552 4.85409 4.89090 4.91561 4.97057 5.10641 5.18031 5.20130 5.21758 5.24897 5.27791 5.28519 5.41672 5.45338 5.50281 5.53361 5.57170 5.61915 5.77211 5.79069 5.83451 5.93831 6.09757 6.30299 6.30832 6.31999 6.39609 6.61609 6.70106 6.82083 6.91060 7.48105 7.57963 7.78469 7.85687 7.99097 8.24609 8.63057 8.90509 9.49736 10.99384 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.025539 B = 0.001686 C = 0.001600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.107122 B =16602.362162 C =17496.518657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.148 3.852 3 C -0.198 4.198 4 C 0.166 3.834 5 N -0.486 5.486 6 C 0.060 3.940 7 C -0.076 4.076 8 C -0.093 4.093 9 C -0.148 4.148 10 C -0.179 4.179 11 H 0.121 0.879 12 C 0.534 3.466 13 O -0.546 6.546 14 N -0.718 5.718 15 C 0.122 3.878 16 C 0.012 3.988 17 C -0.523 4.523 18 H 0.059 0.941 19 C 0.059 3.941 20 N -0.894 5.894 21 Si 0.897 3.103 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 C -0.080 4.080 26 C 0.056 3.944 27 C -0.238 4.238 28 C 0.127 3.873 29 N -0.512 5.512 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.136 0.864 34 H 0.083 0.917 35 H 0.045 0.955 36 H 0.078 0.922 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.398 0.602 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.022 0.978 44 H 0.022 0.978 45 H 0.263 0.737 46 H 0.075 0.925 47 H 0.080 0.920 48 H 0.050 0.950 49 H 0.084 0.916 50 H 0.136 0.864 51 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.372 -28.150 5.194 29.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.011 3.989 3 C -0.221 4.221 4 C 0.059 3.941 5 N -0.200 5.200 6 C -0.064 4.064 7 C -0.113 4.113 8 C -0.094 4.094 9 C -0.185 4.185 10 C -0.200 4.200 11 H 0.139 0.861 12 C 0.320 3.680 13 O -0.426 6.426 14 N -0.366 5.366 15 C 0.000 4.000 16 C -0.025 4.025 17 C -0.562 4.562 18 H 0.077 0.923 19 C -0.143 4.143 20 N -0.533 5.533 21 Si 0.725 3.275 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.201 1.201 25 C -0.118 4.118 26 C -0.070 4.070 27 C -0.261 4.261 28 C -0.030 4.030 29 N -0.224 5.224 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.154 0.846 34 H 0.101 0.899 35 H 0.064 0.936 36 H 0.096 0.904 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.231 0.769 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.040 0.960 44 H 0.040 0.960 45 H 0.072 0.928 46 H 0.094 0.906 47 H 0.098 0.902 48 H 0.069 0.931 49 H 0.102 0.898 50 H 0.154 0.846 51 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -7.616 -28.373 5.514 29.891 hybrid contribution 1.135 1.483 -0.678 1.986 sum -6.481 -26.891 4.836 28.080 Atomic orbital electron populations 1.20723 0.88831 1.03494 1.03123 1.21127 0.96907 0.87902 0.92987 1.21613 0.92844 0.99747 1.07898 1.19293 0.92973 0.89448 0.92425 1.58567 1.05930 1.12882 1.42620 1.22443 1.01019 0.93573 0.89382 1.21476 0.90540 0.93943 1.05369 1.21457 0.94255 0.96211 0.97451 1.23098 1.02281 0.99362 0.93773 1.22347 1.02596 0.89421 1.05642 0.86057 1.19578 0.87198 0.84313 0.76923 1.90617 1.13981 1.85346 1.52610 1.46309 1.10591 1.09986 1.69757 1.21723 0.97109 0.81755 0.99414 1.19321 0.93656 0.91863 0.97659 1.21009 0.93432 0.93497 1.48243 0.92315 1.24994 0.94849 0.99223 0.95186 1.69944 1.04635 1.29310 1.49361 0.86568 0.79131 0.82711 0.79093 1.20106 1.21217 1.20114 1.21270 0.98972 0.92886 0.98685 1.22281 0.85341 0.97991 1.01419 1.22246 1.01622 0.92772 1.09472 1.22522 0.89322 0.97949 0.93226 1.67560 1.09940 1.29196 1.15665 0.90362 0.90457 0.90630 0.84618 0.89861 0.93633 0.90381 0.87857 0.88018 0.88228 0.76874 0.92614 0.92553 0.95957 0.95959 0.92777 0.90601 0.90183 0.93134 0.89767 0.84586 0.82939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.71 10.17 36.01 0.37 -0.34 16 2 C 0.15 1.41 6.78 -82.64 -0.56 0.85 16 3 C -0.20 -1.88 8.83 -39.24 -0.35 -2.23 16 4 C 0.17 1.59 5.66 -83.61 -0.47 1.11 16 5 N -0.49 -4.58 4.63 -170.74 -0.79 -5.37 16 6 C 0.06 0.59 5.32 -3.74 -0.02 0.57 16 7 C -0.08 -0.88 4.32 -26.48 -0.11 -1.00 16 8 C -0.09 -0.94 2.02 -154.54 -0.31 -1.26 16 9 C -0.15 -1.41 9.63 -26.82 -0.26 -1.67 16 10 C -0.18 -2.04 5.92 -91.88 -0.54 -2.58 16 11 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 12 C 0.53 8.48 7.59 -10.99 -0.08 8.39 16 13 O -0.55 -10.20 13.13 5.56 0.07 -10.13 16 14 N -0.72 -12.10 5.56 -60.29 -0.33 -12.43 16 15 C 0.12 2.54 5.61 -4.04 -0.02 2.52 16 16 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 17 C -0.52 -14.39 9.11 -34.44 -0.31 -14.70 16 18 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 20 N -0.89 -25.89 13.29 55.43 0.74 -25.16 16 21 Si 0.90 21.23 29.54 -169.99 -5.02 16.20 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 C -0.08 -0.65 5.87 -26.48 -0.16 -0.80 16 26 C 0.06 0.43 4.20 -3.74 -0.02 0.41 16 27 C -0.24 -2.00 8.89 -39.25 -0.35 -2.35 16 28 C 0.13 1.11 11.17 -17.61 -0.20 0.91 16 29 N -0.51 -5.38 10.27 -9.57 -0.10 -5.48 16 30 H 0.08 0.46 8.14 -51.92 -0.42 0.04 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 33 H 0.14 1.15 7.21 -52.49 -0.38 0.77 16 34 H 0.08 0.78 6.65 -51.93 -0.35 0.43 16 35 H 0.05 0.44 8.12 -51.93 -0.42 0.01 16 36 H 0.08 1.05 8.12 -51.93 -0.42 0.62 16 37 H 0.10 1.42 6.00 -51.93 -0.31 1.11 16 38 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.40 5.85 8.47 -40.82 -0.35 5.50 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.02 0.57 8.14 -51.92 -0.42 0.14 16 44 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 46 H 0.08 0.48 8.08 -51.93 -0.42 0.06 16 47 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.05 0.37 7.91 -51.93 -0.41 -0.05 16 49 H 0.08 0.56 6.80 -51.93 -0.35 0.21 16 50 H 0.14 0.87 5.96 -52.48 -0.31 0.56 16 51 H 0.15 0.91 8.06 -52.48 -0.42 0.49 16 LS Contribution 406.29 15.07 6.12 6.12 Total: -1.00 -32.00 406.29 -11.28 -43.29 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -8.33 Total: 3.39 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -3.64 Total: -10.44 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: -0.49 Total: -48.43 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.07 Total: -10.13 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.00 -11.28 -43.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273583725.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.982 kcal (2) G-P(sol) polarization free energy of solvation -32.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds