Wall clock time and date at job start Wed Apr 1 2020 02:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37922 * 119.57660 * 2 1 4 4 C 1.39459 * 119.06256 * 179.97438 * 3 2 1 5 5 N 1.39174 * 120.86096 * 179.97438 * 4 3 2 6 6 C 1.46812 * 110.99817 * 304.70176 * 5 4 3 7 7 C 1.53264 * 109.43512 * 170.79649 * 6 5 4 8 8 C 1.53216 * 108.62811 * 55.59304 * 7 6 5 9 9 C 1.52769 * 117.79081 * 93.99194 * 8 7 6 10 10 C 1.52735 * 117.84353 * 162.99954 * 8 7 6 11 11 H 1.08995 * 117.50068 * 144.78909 * 10 8 7 12 12 C 1.50696 * 117.50607 * 359.72576 * 10 8 7 13 13 O 1.21280 * 120.00296 * 0.02562 * 12 10 8 14 14 N 1.34779 * 119.99811 * 180.02562 * 12 10 8 15 15 C 1.46506 * 119.99750 * 180.02562 * 14 12 10 16 16 C 1.52998 * 109.46918 * 180.02562 * 15 14 12 17 17 C 1.50701 * 109.47119 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99685 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99846 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00165 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99665 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47825 * 59.99637 * 21 19 17 23 23 H 1.48502 * 109.47496 * 179.97438 * 21 19 17 24 24 H 1.48508 * 109.47372 * 299.99648 * 21 19 17 25 25 C 1.53208 * 114.73351 * 308.58930 * 8 7 6 26 26 C 1.46803 * 110.99593 * 180.02562 * 5 4 3 27 27 C 1.39488 * 118.26924 * 0.26957 * 4 3 2 28 28 C 1.37871 * 119.06970 * 359.48168 * 27 4 3 29 29 N 1.31984 * 119.58089 * 180.02562 * 2 1 3 30 30 H 1.09008 * 109.46902 * 90.00638 * 1 2 3 31 31 H 1.09001 * 109.46812 * 210.00383 * 1 2 3 32 32 H 1.08999 * 109.47357 * 330.00618 * 1 2 3 33 33 H 1.08002 * 120.46572 * 0.02562 * 3 2 1 34 34 H 1.08997 * 109.47574 * 50.80966 * 6 5 4 35 35 H 1.08997 * 109.47881 * 290.78621 * 6 5 4 36 36 H 1.09001 * 109.61252 * 295.84521 * 7 6 5 37 37 H 1.09003 * 109.60947 * 175.33481 * 7 6 5 38 38 H 1.08998 * 117.50106 * 215.29018 * 9 8 7 39 39 H 1.08994 * 117.50859 * 0.33208 * 9 8 7 40 40 H 0.96996 * 120.00048 * 0.02562 * 14 12 10 41 41 H 1.08994 * 109.47056 * 299.99939 * 15 14 12 42 42 H 1.08998 * 109.47166 * 60.00391 * 15 14 12 43 43 H 1.09008 * 109.47044 * 299.99992 * 16 15 14 44 44 H 1.08996 * 109.47227 * 59.99409 * 16 15 14 45 45 H 0.97002 * 119.99488 * 180.02562 * 20 19 17 46 46 H 1.09004 * 109.61284 * 171.15561 * 25 8 7 47 47 H 1.09003 * 109.60847 * 291.48949 * 25 8 7 48 48 H 1.09002 * 109.47723 * 69.21762 * 26 5 4 49 49 H 1.09000 * 109.48795 * 309.19608 * 26 5 4 50 50 H 1.08004 * 120.46140 * 179.72198 * 27 4 3 51 51 H 1.08003 * 119.57606 * 180.24936 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1878 1.1995 0.0000 4 6 3.5823 1.1870 0.0005 5 7 4.3069 2.3752 0.0000 6 6 3.9150 3.2299 -1.1275 7 6 4.5584 4.6117 -0.9677 8 6 6.0743 4.4334 -0.8344 9 6 6.9181 4.5385 -2.1035 10 6 6.9592 5.6576 -1.0602 11 1 7.8598 5.7465 -0.4527 12 6 6.2763 6.9559 -1.4052 13 8 5.0676 7.0005 -1.4937 14 7 7.0089 8.0675 -1.6153 15 6 6.3449 9.3299 -1.9501 16 6 7.3966 10.4253 -2.1367 17 6 6.7136 11.7240 -2.4805 18 1 5.6372 11.7638 -2.5585 19 6 7.4631 12.8610 -2.6964 20 7 8.7739 12.8123 -2.6019 21 14 6.6165 14.4708 -3.1218 22 1 5.6955 14.8519 -2.0210 23 1 7.6371 15.5341 -3.3031 24 1 5.8436 14.3065 -4.3792 25 6 6.5095 3.4224 0.2313 26 6 5.7509 2.1107 0.0001 27 6 4.2319 -0.0474 -0.0047 28 6 3.4775 -1.2014 0.0007 29 7 2.1585 -1.1478 -0.0005 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5137 33 1 1.6484 2.1352 0.0004 34 1 2.8302 3.3339 -1.1448 35 1 4.2518 2.7779 -2.0604 36 1 4.1669 5.0963 -0.0732 37 1 4.3374 5.2217 -1.8437 38 1 7.7917 3.8914 -2.1822 39 1 6.3971 4.7409 -3.0392 40 1 7.9756 8.0318 -1.5449 41 1 5.7790 9.2089 -2.8738 42 1 5.6678 9.6095 -1.1431 43 1 7.9629 10.5464 -1.2132 44 1 8.0735 10.1455 -2.9439 45 1 9.3011 13.6123 -2.7534 46 1 7.5818 3.2440 0.1501 47 1 6.2777 3.8128 1.2222 48 1 6.0427 1.6862 -0.9604 49 1 5.9916 1.4068 0.7968 50 1 5.3107 -0.0984 -0.0090 51 1 3.9720 -2.1615 0.0008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273583725.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:15:55 Heat of formation + Delta-G solvation = -0.790595 kcal Electronic energy + Delta-G solvation = -28999.051903 eV Core-core repulsion = 25090.626892 eV Total energy + Delta-G solvation = -3908.425011 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.94915 -41.14957 -39.57720 -37.57581 -36.44362 -34.82337 -33.79042 -32.99474 -32.13038 -31.59767 -29.67861 -28.54719 -27.14180 -25.07670 -24.76351 -24.36285 -23.22201 -22.74742 -21.89469 -21.09826 -19.67185 -18.62309 -18.36558 -17.95446 -17.37880 -16.75078 -16.61091 -16.45006 -16.43583 -15.98892 -15.74876 -15.49565 -15.16078 -15.12133 -14.85539 -14.43918 -14.38680 -14.29605 -14.15290 -14.02380 -13.27719 -13.26387 -13.25085 -13.11110 -12.94708 -12.84808 -12.71475 -12.54872 -12.52301 -12.26506 -12.15817 -11.67247 -11.57301 -11.48273 -11.35104 -10.99067 -10.80188 -10.61313 -10.45119 -10.37966 -9.98710 -9.87965 -9.17620 -8.25454 -6.36154 0.20817 0.32615 1.40679 1.42702 1.50797 1.54651 2.22496 2.43238 2.53622 2.80036 2.91354 3.09117 3.47298 3.55598 3.60009 3.79045 3.80324 3.84874 4.06929 4.09809 4.15924 4.24750 4.25363 4.32573 4.44600 4.46626 4.49353 4.50189 4.57045 4.64622 4.75109 4.78127 4.78997 4.80186 4.83553 4.85008 4.94446 4.96581 5.04875 5.12928 5.16113 5.21948 5.28851 5.29768 5.43856 5.54031 5.56369 5.68217 5.77638 5.92228 6.14745 6.16079 6.66758 6.76815 7.12817 7.33006 7.33237 8.85979 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.025539 B = 0.001686 C = 0.001600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.107122 B =16602.362162 C =17496.518657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.134 3.866 3 C -0.211 4.211 4 C 0.154 3.846 5 N -0.495 5.495 6 C 0.070 3.930 7 C -0.071 4.071 8 C -0.092 4.092 9 C -0.129 4.129 10 C -0.188 4.188 11 H 0.148 0.852 12 C 0.529 3.471 13 O -0.579 6.579 14 N -0.716 5.716 15 C 0.143 3.857 16 C 0.023 3.977 17 C -0.549 4.549 18 H 0.058 0.942 19 C 0.008 3.992 20 N -0.925 5.925 21 Si 0.964 3.036 22 H -0.269 1.269 23 H -0.280 1.280 24 H -0.269 1.269 25 C -0.074 4.074 26 C 0.054 3.946 27 C -0.235 4.235 28 C 0.119 3.881 29 N -0.536 5.536 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.137 0.863 34 H 0.080 0.920 35 H 0.050 0.950 36 H 0.052 0.948 37 H 0.076 0.924 38 H 0.137 0.863 39 H 0.086 0.914 40 H 0.410 0.590 41 H 0.044 0.956 42 H 0.043 0.957 43 H 0.008 0.992 44 H 0.009 0.991 45 H 0.266 0.734 46 H 0.104 0.896 47 H 0.070 0.930 48 H 0.062 0.938 49 H 0.100 0.900 50 H 0.160 0.840 51 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.417 -29.762 5.322 30.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.002 4.002 3 C -0.234 4.234 4 C 0.047 3.953 5 N -0.209 5.209 6 C -0.055 4.055 7 C -0.109 4.109 8 C -0.093 4.093 9 C -0.166 4.166 10 C -0.209 4.209 11 H 0.166 0.834 12 C 0.318 3.682 13 O -0.460 6.460 14 N -0.367 5.367 15 C 0.019 3.981 16 C -0.015 4.015 17 C -0.588 4.588 18 H 0.076 0.924 19 C -0.191 4.191 20 N -0.564 5.564 21 Si 0.789 3.211 22 H -0.194 1.194 23 H -0.205 1.205 24 H -0.194 1.194 25 C -0.111 4.111 26 C -0.072 4.072 27 C -0.258 4.258 28 C -0.038 4.038 29 N -0.249 5.249 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.155 0.845 34 H 0.098 0.902 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.155 0.845 39 H 0.105 0.895 40 H 0.245 0.755 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.026 0.974 44 H 0.027 0.973 45 H 0.075 0.925 46 H 0.122 0.878 47 H 0.089 0.911 48 H 0.080 0.920 49 H 0.118 0.882 50 H 0.177 0.823 51 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -6.648 -30.012 5.650 31.255 hybrid contribution 0.809 1.951 -0.712 2.229 sum -5.839 -28.061 4.938 29.084 Atomic orbital electron populations 1.20772 0.87424 1.04029 1.03767 1.21498 0.98086 0.87787 0.92838 1.21744 0.93316 0.99916 1.08406 1.19453 0.93105 0.89936 0.92844 1.58537 1.07155 1.12947 1.42296 1.22259 1.00708 0.92616 0.89889 1.21264 0.92325 0.94489 1.02793 1.21548 0.92959 0.95915 0.98876 1.23214 1.02866 0.97942 0.92593 1.22335 1.03596 0.87197 1.07750 0.83425 1.20400 0.86920 0.85308 0.75610 1.90619 1.15676 1.86001 1.53735 1.46155 1.11223 1.09067 1.70219 1.21172 0.95768 0.82754 0.98421 1.19130 0.93876 0.92285 0.96189 1.21442 0.93733 0.95068 1.48537 0.92407 1.25863 0.95518 1.02818 0.94899 1.70049 1.05950 1.30411 1.50021 0.85510 0.78211 0.78315 0.79080 1.19422 1.20490 1.19363 1.21289 1.00658 0.92110 0.97087 1.22399 0.84008 0.98112 1.02632 1.22479 1.02777 0.92013 1.08551 1.23005 0.88985 0.99300 0.92495 1.67604 1.11033 1.29693 1.16574 0.89596 0.90473 0.89516 0.84474 0.90209 0.93205 0.92943 0.90555 0.84546 0.89546 0.75488 0.93738 0.93832 0.97380 0.97312 0.92524 0.87753 0.91147 0.91972 0.88208 0.82259 0.80467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.35 10.17 71.24 0.72 -0.62 16 2 C 0.13 2.51 6.78 42.46 0.29 2.80 16 3 C -0.21 -3.93 8.83 22.49 0.20 -3.73 16 4 C 0.15 2.74 5.66 38.57 0.22 2.96 16 5 N -0.50 -8.63 4.63 -694.08 -3.21 -11.85 16 6 C 0.07 1.34 5.32 86.41 0.46 1.80 16 7 C -0.07 -1.68 4.32 30.76 0.13 -1.55 16 8 C -0.09 -1.71 2.02 -52.20 -0.11 -1.82 16 9 C -0.13 -2.13 9.63 30.54 0.29 -1.83 16 10 C -0.19 -3.95 5.92 -11.61 -0.07 -4.02 16 11 H 0.15 2.35 8.14 -2.39 -0.02 2.33 16 12 C 0.53 16.85 7.59 87.66 0.67 17.52 16 13 O -0.58 -22.40 13.13 -3.03 -0.04 -22.44 16 14 N -0.72 -24.35 5.56 -463.06 -2.57 -26.92 16 15 C 0.14 6.12 5.61 86.38 0.48 6.60 16 16 C 0.02 1.14 5.09 29.85 0.15 1.29 16 17 C -0.55 -30.72 9.11 25.60 0.23 -30.49 16 18 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 19 C 0.01 0.45 5.46 84.66 0.46 0.91 16 20 N -0.92 -53.98 13.29 21.45 0.28 -53.70 16 21 Si 0.96 43.49 29.54 68.60 2.03 45.51 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 23 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 24 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 25 C -0.07 -0.96 5.87 30.75 0.18 -0.78 16 26 C 0.05 0.67 4.20 86.41 0.36 1.03 16 27 C -0.24 -3.42 8.89 22.48 0.20 -3.22 16 28 C 0.12 1.86 11.17 84.58 0.94 2.81 16 29 N -0.54 -10.81 10.27 -184.19 -1.89 -12.70 16 30 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 31 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.09 0.90 8.08 -2.39 -0.02 0.88 16 33 H 0.14 2.37 7.21 -2.91 -0.02 2.35 16 34 H 0.08 1.54 6.65 -2.39 -0.02 1.52 16 35 H 0.05 0.90 8.12 -2.39 -0.02 0.89 16 36 H 0.05 1.48 8.12 -2.39 -0.02 1.46 16 37 H 0.08 2.22 6.00 -2.39 -0.01 2.20 16 38 H 0.14 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.41 11.90 8.47 -92.71 -0.79 11.12 16 41 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.01 0.41 8.14 -2.38 -0.02 0.40 16 44 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 45 H 0.27 14.62 8.31 -92.71 -0.77 13.84 16 46 H 0.10 0.82 8.08 -2.38 -0.02 0.80 16 47 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.06 0.65 7.91 -2.39 -0.02 0.63 16 49 H 0.10 0.95 6.80 -2.39 -0.02 0.93 16 50 H 0.16 1.46 5.96 -2.91 -0.02 1.45 16 51 H 0.18 1.68 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -70.68 406.29 0.57 -70.11 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: 0.14 Total: 22.32 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: 5.83 Total: -10.35 kcal Atomic # 7 Polarization: -97.77 SS G_CDS: -7.39 Total: -105.16 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.04 Total: -22.44 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -70.68 0.57 -70.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273583725.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.323 kcal (2) G-P(sol) polarization free energy of solvation -70.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds