Wall clock time and date at job start Wed Apr 1 2020 02:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.49728 * 2 1 4 4 N 1.46503 * 109.47015 * 299.99576 * 3 2 1 5 5 C 1.34777 * 120.00171 * 180.02562 * 4 3 2 6 6 O 1.21280 * 119.99767 * 359.97438 * 5 4 3 7 7 C 1.50696 * 119.99654 * 180.02562 * 5 4 3 8 8 H 1.09000 * 110.26413 * 300.69567 * 7 5 4 9 9 C 1.54345 * 110.29178 * 178.64758 * 7 5 4 10 10 C 1.54376 * 102.38618 * 214.72688 * 9 7 5 11 11 C 1.51221 * 105.11936 * 26.29279 * 10 9 7 12 12 C 1.38743 * 130.69430 * 162.85746 * 11 10 9 13 13 C 1.38986 * 118.45123 * 179.78131 * 12 11 10 14 14 C 1.38232 * 119.03180 * 0.21770 * 13 12 11 15 15 N 1.31681 * 120.79880 * 359.84330 * 14 13 12 16 16 C 1.32300 * 122.03301 * 359.97438 * 15 14 13 17 17 C 1.53049 * 109.49453 * 120.06005 * 2 1 3 18 18 C 1.53030 * 109.53908 * 58.58769 * 17 2 1 19 19 C 1.53193 * 109.31383 * 61.36342 * 18 17 2 20 20 N 1.46930 * 108.77590 * 305.36789 * 19 18 17 21 21 C 1.36933 * 120.62773 * 233.62891 * 20 19 18 22 22 H 1.07997 * 120.00562 * 27.66230 * 21 20 19 23 23 C 1.38812 * 119.99990 * 207.66668 * 21 20 19 24 24 N 1.31621 * 119.99669 * 17.35076 * 23 21 20 25 25 Si 1.86800 * 120.00279 * 197.35146 * 23 21 20 26 26 H 1.48500 * 109.46729 * 59.99907 * 25 23 21 27 27 H 1.48496 * 109.47068 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.46896 * 299.99914 * 25 23 21 29 29 C 1.46998 * 118.75558 * 53.60347 * 20 19 18 30 30 H 1.09004 * 109.47114 * 60.00788 * 1 2 3 31 31 H 1.09003 * 109.47600 * 300.00337 * 1 2 3 32 32 H 1.08997 * 109.47182 * 179.97438 * 1 2 3 33 33 H 1.08992 * 109.47735 * 59.99574 * 3 2 1 34 34 H 1.09008 * 109.47290 * 179.97438 * 3 2 1 35 35 H 0.97000 * 119.99897 * 359.97438 * 4 3 2 36 36 H 1.09007 * 110.82187 * 332.94184 * 9 7 5 37 37 H 1.08993 * 110.82400 * 96.30142 * 9 7 5 38 38 H 1.09002 * 110.31371 * 145.20855 * 10 9 7 39 39 H 1.09003 * 110.30689 * 267.38232 * 10 9 7 40 40 H 1.07995 * 120.72091 * 0.02562 * 12 11 10 41 41 H 1.08001 * 120.46589 * 180.02562 * 13 12 11 42 42 H 1.07995 * 119.60128 * 179.82389 * 14 13 12 43 43 H 1.09004 * 109.45558 * 178.61228 * 17 2 1 44 44 H 1.09002 * 109.45862 * 298.57775 * 17 2 1 45 45 H 1.09003 * 109.50338 * 181.31656 * 18 17 2 46 46 H 1.09003 * 109.50006 * 301.38204 * 18 17 2 47 47 H 1.09001 * 109.58499 * 65.15268 * 19 18 17 48 48 H 1.09003 * 109.58884 * 185.43426 * 19 18 17 49 49 H 0.97008 * 119.99888 * 180.02562 * 24 23 21 50 50 H 1.08997 * 109.62545 * 186.61800 * 29 20 19 51 51 H 1.09002 * 109.57695 * 66.17206 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 7 1.5526 2.1331 -1.1963 5 6 1.8792 3.4231 -1.4099 6 8 2.5767 4.0122 -0.6115 7 6 1.3768 4.1337 -2.6401 8 1 1.7218 3.6224 -3.5388 9 6 1.8539 5.6016 -2.6428 10 6 0.6638 6.3354 -3.2973 11 6 -0.5425 5.4728 -3.0014 12 6 -1.8980 5.7638 -3.0559 13 6 -2.8040 4.7616 -2.7297 14 6 -2.3251 3.5187 -2.3601 15 7 -1.0308 3.2798 -2.3185 16 6 -0.1363 4.2052 -2.6249 17 6 2.0407 -0.7227 1.2487 18 6 1.5029 -2.1553 1.2669 19 6 2.0139 -2.9040 0.0319 20 7 1.6516 -2.1385 -1.1688 21 6 0.9632 -2.7319 -2.1930 22 1 0.3073 -3.5658 -1.9911 23 6 1.1085 -2.2617 -3.4910 24 7 2.1332 -1.4969 -3.8029 25 14 -0.1502 -2.7145 -4.7949 26 1 -1.4890 -2.2218 -4.3826 27 1 0.2299 -2.0904 -6.0876 28 1 -0.1923 -4.1907 -4.9507 29 6 2.0413 -0.7235 -1.2497 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6775 1.9563 0.8898 34 1 3.1307 1.4418 0.0005 35 1 0.9951 1.6617 -1.8350 36 1 2.0167 5.9579 -1.6256 37 1 2.7584 5.7139 -3.2404 38 1 0.5397 7.3241 -2.8555 39 1 0.8156 6.4174 -4.3736 40 1 -2.2402 6.7452 -3.3490 41 1 -3.8665 4.9523 -2.7616 42 1 -3.0208 2.7341 -2.1020 43 1 3.1304 -0.7439 1.2357 44 1 1.6984 -0.1952 2.1390 45 1 1.8479 -2.6621 2.1681 46 1 0.4131 -2.1350 1.2554 47 1 3.0979 -3.0042 0.0880 48 1 1.5573 -3.8928 -0.0109 49 1 2.2346 -1.1679 -4.7099 50 1 1.6008 -0.2727 -2.1389 51 1 3.1275 -0.6460 -1.2980 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278672359.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:19 Heat of formation + Delta-G solvation = -7.891989 kcal Electronic energy + Delta-G solvation = -31591.877825 eV Core-core repulsion = 27683.144874 eV Total energy + Delta-G solvation = -3908.732951 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.02240 -40.72122 -39.72714 -37.05113 -36.22399 -34.89555 -33.71363 -32.86139 -31.62399 -30.34182 -29.50183 -27.94965 -27.27038 -26.66815 -24.45496 -23.98931 -23.32946 -22.45428 -21.84298 -21.00163 -19.58513 -18.55431 -18.37706 -17.75421 -17.37241 -16.98039 -16.67141 -16.25383 -15.96551 -15.71088 -15.50823 -15.39073 -15.00157 -14.83841 -14.58682 -14.49584 -14.35286 -14.10607 -13.86130 -13.79025 -13.57988 -13.15958 -13.02367 -12.91509 -12.71288 -12.61188 -12.56784 -12.54990 -12.27521 -12.18146 -12.00677 -11.85434 -11.72998 -11.41209 -11.28343 -10.97569 -10.95376 -10.63162 -10.49393 -10.23060 -9.98363 -9.68613 -8.62121 -7.83313 -5.27363 0.09669 0.35709 1.45861 1.48173 1.53937 1.57531 2.27713 2.52470 2.82309 2.95083 3.29790 3.35449 3.61013 3.72010 3.88420 3.95525 3.95859 4.04141 4.05358 4.08855 4.19174 4.29518 4.36310 4.45753 4.51938 4.55172 4.58163 4.64448 4.71590 4.74938 4.80545 4.83727 4.97052 4.99585 5.05672 5.06737 5.11038 5.16604 5.19911 5.23876 5.29478 5.31120 5.33785 5.41082 5.48391 5.55841 5.63476 5.73468 5.77433 5.78415 6.42248 6.55949 7.03428 7.18626 7.20548 7.90287 8.42846 9.21960 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010284 B = 0.004095 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2721.940977 B = 6835.583218 C = 8021.160924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.090 4.090 3 C 0.142 3.858 4 N -0.705 5.705 5 C 0.519 3.481 6 O -0.581 6.581 7 C -0.065 4.065 8 H 0.119 0.881 9 C -0.098 4.098 10 C -0.069 4.069 11 C -0.146 4.146 12 C -0.067 4.067 13 C -0.161 4.161 14 C 0.082 3.918 15 N -0.505 5.505 16 C 0.093 3.907 17 C -0.094 4.094 18 C -0.123 4.123 19 C 0.137 3.863 20 N -0.604 5.604 21 C -0.256 4.256 22 H 0.064 0.936 23 C -0.043 4.043 24 N -0.930 5.930 25 Si 0.955 3.045 26 H -0.279 1.279 27 H -0.297 1.297 28 H -0.278 1.278 29 C 0.200 3.800 30 H 0.038 0.962 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.050 0.950 35 H 0.408 0.592 36 H 0.076 0.924 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.168 0.832 41 H 0.171 0.829 42 H 0.168 0.832 43 H 0.052 0.948 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.063 0.937 47 H 0.008 0.992 48 H 0.053 0.947 49 H 0.248 0.752 50 H 0.062 0.938 51 H -0.019 1.019 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.302 16.213 3.329 18.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.092 4.092 3 C 0.018 3.982 4 N -0.354 5.354 5 C 0.306 3.694 6 O -0.462 6.462 7 C -0.087 4.087 8 H 0.137 0.863 9 C -0.136 4.136 10 C -0.106 4.106 11 C -0.148 4.148 12 C -0.092 4.092 13 C -0.180 4.180 14 C -0.075 4.075 15 N -0.214 5.214 16 C -0.045 4.045 17 C -0.132 4.132 18 C -0.162 4.162 19 C 0.011 3.989 20 N -0.327 5.327 21 C -0.387 4.387 22 H 0.082 0.918 23 C -0.238 4.238 24 N -0.576 5.576 25 Si 0.784 3.216 26 H -0.205 1.205 27 H -0.223 1.223 28 H -0.203 1.203 29 C 0.074 3.926 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.245 0.755 36 H 0.095 0.905 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.186 0.814 41 H 0.188 0.812 42 H 0.185 0.815 43 H 0.071 0.929 44 H 0.094 0.906 45 H 0.100 0.900 46 H 0.081 0.919 47 H 0.026 0.974 48 H 0.071 0.929 49 H 0.057 0.943 50 H 0.081 0.919 51 H -0.001 1.001 Dipole moment (debyes) X Y Z Total from point charges -7.491 15.783 3.996 17.922 hybrid contribution -0.714 -0.293 -1.495 1.683 sum -8.206 15.490 2.501 17.707 Atomic orbital electron populations 1.21561 0.93692 1.01442 1.00250 1.21326 0.96915 0.92667 0.98269 1.21268 0.97872 0.91793 0.87308 1.46096 1.52069 1.11723 1.25554 1.20653 0.79354 0.81859 0.87560 1.90610 1.40309 1.66874 1.48435 1.21015 0.90459 1.00064 0.97136 0.86303 1.22286 0.99220 0.89049 1.03007 1.21040 0.88635 0.98347 1.02582 1.21793 0.96676 0.96300 1.00055 1.21589 0.90611 1.01074 0.95955 1.22559 1.02595 0.93392 0.99486 1.23029 0.90495 0.97700 0.96294 1.66727 1.03812 1.36288 1.14529 1.21498 0.94211 0.91198 0.97583 1.21374 0.99751 0.95985 0.96113 1.21921 1.00906 0.95494 0.97840 1.21098 0.96020 0.94607 0.87131 1.44229 1.65283 1.06396 1.16753 1.19403 1.17781 1.14838 0.86639 0.91815 1.25620 0.98453 1.01151 0.98592 1.70184 1.28923 1.39886 1.18652 0.85520 0.79652 0.77868 0.78532 1.20486 1.22322 1.20349 1.20511 0.93635 0.83704 0.94714 0.94310 0.92621 0.92629 0.91674 0.93162 0.75510 0.90509 0.87822 0.87853 0.87607 0.81404 0.81179 0.81485 0.92913 0.90579 0.90046 0.91867 0.97390 0.92892 0.94325 0.91946 1.00092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.08 7.81 71.98 0.56 -3.52 16 2 C -0.09 -3.37 0.53 -52.11 -0.03 -3.40 16 3 C 0.14 5.20 4.57 86.38 0.39 5.59 16 4 N -0.70 -26.29 4.78 -463.06 -2.21 -28.50 16 5 C 0.52 18.64 7.17 87.66 0.63 19.27 16 6 O -0.58 -23.31 15.50 -3.03 -0.05 -23.35 16 7 C -0.06 -1.86 3.25 -11.58 -0.04 -1.90 16 8 H 0.12 3.32 8.14 -2.39 -0.02 3.30 16 9 C -0.10 -2.12 6.34 31.52 0.20 -1.92 16 10 C -0.07 -1.10 6.77 30.48 0.21 -0.89 16 11 C -0.15 -3.11 6.16 -19.56 -0.12 -3.23 16 12 C -0.07 -1.11 10.19 22.57 0.23 -0.88 16 13 C -0.16 -2.76 10.14 22.45 0.23 -2.53 16 14 C 0.08 1.96 11.18 84.71 0.95 2.90 16 15 N -0.50 -15.51 9.72 -182.86 -1.78 -17.29 16 16 C 0.09 2.63 6.60 42.76 0.28 2.91 16 17 C -0.09 -3.08 4.71 30.62 0.14 -2.93 16 18 C -0.12 -4.02 5.74 30.67 0.18 -3.84 16 19 C 0.14 5.68 6.51 86.36 0.56 6.24 16 20 N -0.60 -29.99 2.43 -698.92 -1.70 -31.69 16 21 C -0.26 -13.95 9.59 84.03 0.81 -13.15 16 22 H 0.06 3.40 7.89 -2.91 -0.02 3.38 16 23 C -0.04 -2.35 4.91 84.86 0.42 -1.94 16 24 N -0.93 -54.52 11.19 21.65 0.24 -54.28 16 25 Si 0.96 44.84 29.59 68.60 2.03 46.87 16 26 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 27 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 28 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 29 C 0.20 9.58 3.73 86.35 0.32 9.90 16 30 H 0.04 1.51 6.86 -2.38 -0.02 1.49 16 31 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.05 2.17 5.97 -2.39 -0.01 2.16 16 33 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 35 H 0.41 16.23 5.76 -92.71 -0.53 15.69 16 36 H 0.08 1.94 7.04 -2.38 -0.02 1.92 16 37 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 41 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 42 H 0.17 3.39 8.06 -2.91 -0.02 3.36 16 43 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 44 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 46 H 0.06 2.09 6.34 -2.39 -0.02 2.07 16 47 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 48 H 0.05 2.14 7.94 -2.39 -0.02 2.12 16 49 H 0.25 14.20 8.31 -92.70 -0.77 13.43 16 50 H 0.06 3.32 4.94 -2.39 -0.01 3.31 16 51 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 Total: -1.00 -70.92 393.35 2.85 -68.07 By element: Atomic # 1 Polarization: 33.09 SS G_CDS: 0.40 Total: 33.49 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: 5.92 Total: 6.69 kcal Atomic # 7 Polarization: -126.31 SS G_CDS: -5.45 Total: -131.76 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.05 Total: -23.35 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -70.92 2.85 -68.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278672359.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.175 kcal (2) G-P(sol) polarization free energy of solvation -70.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds