Wall clock time and date at job start Wed Apr 1 2020 02:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.49980 * 2 1 4 4 N 1.46496 * 109.46977 * 300.05979 * 3 2 1 5 5 C 1.34774 * 120.00267 * 179.97438 * 4 3 2 6 6 O 1.21291 * 119.99669 * 0.02562 * 5 4 3 7 7 C 1.50698 * 120.00443 * 179.97438 * 5 4 3 8 8 H 1.09006 * 110.25558 * 60.60607 * 7 5 4 9 9 C 1.54335 * 110.29722 * 182.75983 * 7 5 4 10 10 C 1.54195 * 102.46677 * 92.79856 * 9 7 5 11 11 C 1.51218 * 105.20742 * 25.95226 * 10 9 7 12 12 C 1.38743 * 130.69598 * 162.96701 * 11 10 9 13 13 C 1.38576 * 118.55978 * 180.32093 * 12 11 10 14 14 C 1.38225 * 118.99035 * 0.02562 * 13 12 11 15 15 N 1.31689 * 120.79901 * 359.97438 * 14 13 12 16 16 C 1.32294 * 122.03460 * 359.97438 * 15 14 13 17 17 C 1.53042 * 109.49552 * 120.05865 * 2 1 3 18 18 C 1.53046 * 109.53636 * 58.62079 * 17 2 1 19 19 C 1.53194 * 109.31391 * 61.36370 * 18 17 2 20 20 N 1.46930 * 108.77347 * 305.36434 * 19 18 17 21 21 C 1.36932 * 120.63163 * 233.60693 * 20 19 18 22 22 H 1.07998 * 119.99741 * 151.85491 * 21 20 19 23 23 C 1.38812 * 119.99913 * 331.84953 * 21 20 19 24 24 N 1.31618 * 120.00310 * 343.06718 * 23 21 20 25 25 Si 1.86804 * 119.99820 * 163.06290 * 23 21 20 26 26 H 1.48493 * 109.47338 * 90.00015 * 25 23 21 27 27 H 1.48501 * 109.47310 * 210.00766 * 25 23 21 28 28 H 1.48507 * 109.46845 * 330.00639 * 25 23 21 29 29 C 1.46932 * 118.73800 * 53.61180 * 20 19 18 30 30 H 1.09010 * 109.46622 * 60.00251 * 1 2 3 31 31 H 1.08993 * 109.47725 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47267 * 300.00726 * 1 2 3 33 33 H 1.09007 * 109.46899 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47201 * 60.06221 * 3 2 1 35 35 H 0.97006 * 119.99952 * 0.02562 * 4 3 2 36 36 H 1.09004 * 110.82544 * 210.81119 * 9 7 5 37 37 H 1.09007 * 110.82632 * 334.16619 * 9 7 5 38 38 H 1.09006 * 109.95537 * 267.17302 * 10 9 7 39 39 H 1.08998 * 110.58379 * 145.05954 * 10 9 7 40 40 H 1.08001 * 120.72049 * 0.30191 * 12 11 10 41 41 H 1.08002 * 120.50453 * 179.97438 * 13 12 11 42 42 H 1.08001 * 119.60191 * 179.97438 * 14 13 12 43 43 H 1.09000 * 109.46101 * 178.63631 * 17 2 1 44 44 H 1.08993 * 109.46614 * 298.61462 * 17 2 1 45 45 H 1.09001 * 109.50052 * 181.31926 * 18 17 2 46 46 H 1.09002 * 109.49450 * 301.37960 * 18 17 2 47 47 H 1.09000 * 109.58737 * 65.15250 * 19 18 17 48 48 H 1.08998 * 109.58756 * 185.43853 * 19 18 17 49 49 H 0.97000 * 119.99670 * 179.97438 * 24 23 21 50 50 H 1.08998 * 109.58762 * 186.60233 * 29 20 19 51 51 H 1.09003 * 109.58839 * 66.17300 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4423 0.0000 4 7 1.5515 2.1335 -1.1954 5 6 1.8771 3.4238 -1.4084 6 8 2.5755 4.0127 -0.6105 7 6 1.3744 4.1348 -2.6384 8 1 0.2845 4.1517 -2.6455 9 6 1.9345 5.5719 -2.6926 10 6 3.2112 5.3998 -3.5399 11 6 2.9550 4.1832 -4.4007 12 6 3.5903 3.7393 -5.5516 13 6 3.1380 2.5744 -6.1505 14 6 2.0740 1.8988 -5.5831 15 7 1.4949 2.3497 -4.4897 16 6 1.8976 3.4567 -3.8877 17 6 2.0407 -0.7226 1.2487 18 6 1.5035 -2.1556 1.2664 19 6 2.0152 -2.9038 0.0314 20 7 1.6527 -2.1383 -1.1692 21 6 0.9653 -2.7319 -2.1940 22 1 0.3214 -2.1392 -2.8268 23 6 1.0962 -4.0953 -2.4194 24 7 2.1045 -4.7560 -1.8910 25 14 -0.1588 -4.9925 -3.4728 26 1 0.2779 -4.9679 -4.8919 27 1 -0.2739 -6.4003 -3.0145 28 1 -1.4783 -4.3223 -3.3493 29 6 2.0420 -0.7237 -1.2493 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 3.1308 1.4417 -0.0005 34 1 1.6785 1.9559 0.8905 35 1 0.9926 1.6626 -1.8334 36 1 1.2328 6.2428 -3.1882 37 1 2.1724 5.9331 -1.6920 38 1 4.0692 5.2292 -2.8894 39 1 3.3777 6.2773 -4.1646 40 1 4.4191 4.2898 -5.9716 41 1 3.6092 2.2005 -7.0476 42 1 1.7132 0.9901 -6.0420 43 1 3.1304 -0.7435 1.2359 44 1 1.6980 -0.1956 2.1390 45 1 1.8485 -2.6624 2.1677 46 1 0.4138 -2.1357 1.2547 47 1 3.0992 -3.0036 0.0877 48 1 1.5590 -3.8928 -0.0117 49 1 2.1957 -5.7088 -2.0483 50 1 1.6015 -0.2734 -2.1388 51 1 3.1281 -0.6457 -1.2974 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278672361.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:25 Heat of formation + Delta-G solvation = 10.457933 kcal Electronic energy + Delta-G solvation = -31341.269056 eV Core-core repulsion = 27433.331817 eV Total energy + Delta-G solvation = -3907.937238 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.19348 -39.53418 -38.37987 -36.07956 -34.83515 -33.24783 -32.73039 -30.85107 -30.43027 -29.49491 -28.53362 -26.56998 -25.47531 -25.17287 -23.64674 -22.59731 -22.02431 -21.52890 -20.52445 -19.90944 -18.03686 -17.41678 -16.89058 -16.61943 -16.20162 -15.80333 -15.35482 -14.94225 -14.83184 -14.63978 -14.05622 -13.84109 -13.72054 -13.59480 -13.51466 -13.32907 -13.08396 -12.93992 -12.66019 -12.26680 -12.15710 -12.07256 -11.90499 -11.69120 -11.46512 -11.28380 -11.22925 -10.94218 -10.88293 -10.58304 -10.42576 -10.19035 -10.13284 -10.06014 -9.84051 -9.77088 -9.49983 -9.39737 -9.32342 -8.84935 -8.77868 -8.43105 -6.62552 -5.76325 -3.18400 0.94042 1.16182 2.63934 3.29292 3.37685 3.45169 3.47420 3.69121 3.84952 4.18062 4.50358 4.59860 4.66379 4.79499 4.80778 5.00159 5.08213 5.14036 5.21521 5.28480 5.36382 5.41423 5.43361 5.46023 5.60217 5.64120 5.65709 5.82859 5.84255 5.91063 5.92322 5.99665 6.03045 6.07784 6.09306 6.18773 6.25046 6.42694 6.50535 6.56702 6.62762 6.64177 6.68309 6.81565 6.88840 6.93717 7.02592 7.42674 7.67404 7.70113 7.82379 7.88956 8.31685 8.47374 9.24022 9.87536 10.44861 11.32019 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011075 B = 0.003774 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.671112 B = 7416.593365 C = 9234.670503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.092 4.092 3 C 0.133 3.867 4 N -0.713 5.713 5 C 0.525 3.475 6 O -0.544 6.544 7 C -0.061 4.061 8 H 0.114 0.886 9 C -0.104 4.104 10 C -0.078 4.078 11 C -0.142 4.142 12 C -0.067 4.067 13 C -0.168 4.168 14 C 0.110 3.890 15 N -0.468 5.468 16 C 0.119 3.881 17 C -0.094 4.094 18 C -0.143 4.143 19 C 0.170 3.830 20 N -0.586 5.586 21 C -0.248 4.248 22 H 0.065 0.935 23 C 0.003 3.997 24 N -0.903 5.903 25 Si 0.899 3.101 26 H -0.288 1.288 27 H -0.291 1.291 28 H -0.279 1.279 29 C 0.161 3.839 30 H 0.043 0.957 31 H 0.076 0.924 32 H 0.039 0.961 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.409 0.591 36 H 0.080 0.920 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.132 0.868 41 H 0.138 0.862 42 H 0.162 0.838 43 H 0.055 0.945 44 H 0.047 0.953 45 H 0.048 0.952 46 H 0.059 0.941 47 H 0.015 0.985 48 H 0.086 0.914 49 H 0.253 0.747 50 H 0.052 0.948 51 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.191 18.593 -3.174 18.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.094 4.094 3 C 0.009 3.991 4 N -0.364 5.364 5 C 0.309 3.691 6 O -0.423 6.423 7 C -0.083 4.083 8 H 0.132 0.868 9 C -0.142 4.142 10 C -0.116 4.116 11 C -0.144 4.144 12 C -0.093 4.093 13 C -0.188 4.188 14 C -0.048 4.048 15 N -0.176 5.176 16 C -0.019 4.019 17 C -0.132 4.132 18 C -0.183 4.183 19 C 0.044 3.956 20 N -0.308 5.308 21 C -0.377 4.377 22 H 0.082 0.918 23 C -0.196 4.196 24 N -0.547 5.547 25 Si 0.729 3.271 26 H -0.215 1.215 27 H -0.217 1.217 28 H -0.205 1.205 29 C 0.034 3.966 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.246 0.754 36 H 0.099 0.901 37 H 0.120 0.880 38 H 0.105 0.895 39 H 0.098 0.902 40 H 0.150 0.850 41 H 0.156 0.844 42 H 0.179 0.821 43 H 0.073 0.927 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.077 0.923 47 H 0.033 0.967 48 H 0.104 0.896 49 H 0.063 0.937 50 H 0.071 0.929 51 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 0.020 18.313 -2.279 18.454 hybrid contribution -0.050 -0.538 -1.377 1.479 sum -0.030 17.775 -3.656 18.147 Atomic orbital electron populations 1.21760 0.94216 1.03085 0.99596 1.21327 0.96620 0.92268 0.99175 1.21456 0.98807 0.92160 0.86708 1.46105 1.52885 1.11525 1.25911 1.20047 0.80363 0.82215 0.86457 1.90663 1.38144 1.66323 1.47128 1.20770 1.02750 0.95325 0.89486 0.86762 1.22228 0.96361 0.93183 1.02398 1.20945 0.99338 0.94723 0.96566 1.21466 0.97400 0.99123 0.96435 1.21052 0.98646 0.95777 0.93840 1.22132 0.98728 0.96144 1.01750 1.22726 0.92402 0.98744 0.90883 1.66821 1.29825 1.12104 1.08879 1.21318 0.93979 0.91485 0.95110 1.21356 0.99886 0.96591 0.95407 1.22230 1.00821 0.95225 0.99985 1.20774 0.96544 0.95583 0.82659 1.43977 1.65153 1.05214 1.16479 1.19142 1.18426 0.91638 1.08539 0.91762 1.25015 0.97143 0.98146 0.99273 1.70039 1.28387 1.08250 1.48048 0.86355 0.81582 0.79110 0.80078 1.21494 1.21666 1.20487 1.20863 0.95794 0.86417 0.93478 0.93773 0.90487 0.94167 0.91904 0.91902 0.75368 0.90140 0.88005 0.89476 0.90180 0.85032 0.84409 0.82053 0.92668 0.93460 0.93381 0.92270 0.96664 0.89597 0.93741 0.92934 0.96820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 7.81 37.16 0.29 -1.84 16 2 C -0.09 -1.56 0.53 -154.39 -0.08 -1.64 16 3 C 0.13 2.07 4.57 -4.04 -0.02 2.05 16 4 N -0.71 -10.65 4.92 -60.29 -0.30 -10.95 16 5 C 0.52 7.66 7.17 -10.99 -0.08 7.58 16 6 O -0.54 -9.21 15.45 5.55 0.09 -9.13 16 7 C -0.06 -0.72 3.27 -91.85 -0.30 -1.02 16 8 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 9 C -0.10 -0.98 6.39 -25.41 -0.16 -1.15 16 10 C -0.08 -0.74 6.75 -27.00 -0.18 -0.92 16 11 C -0.14 -1.63 6.16 -104.21 -0.64 -2.27 16 12 C -0.07 -0.68 10.17 -39.27 -0.40 -1.08 16 13 C -0.17 -1.72 10.12 -39.46 -0.40 -2.12 16 14 C 0.11 1.35 11.18 -17.62 -0.20 1.15 16 15 N -0.47 -6.59 10.35 -9.19 -0.10 -6.69 16 16 C 0.12 1.54 6.52 -82.04 -0.53 1.01 16 17 C -0.09 -1.59 4.71 -26.69 -0.13 -1.72 16 18 C -0.14 -2.70 5.74 -26.61 -0.15 -2.86 16 19 C 0.17 4.01 5.30 -3.71 -0.02 3.99 16 20 N -0.59 -14.28 2.43 -172.31 -0.42 -14.70 16 21 C -0.25 -6.63 9.58 -15.06 -0.14 -6.77 16 22 H 0.06 1.70 7.88 -52.49 -0.41 1.29 16 23 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 24 N -0.90 -25.98 11.19 55.49 0.62 -25.36 16 25 Si 0.90 21.45 29.59 -169.99 -5.03 16.42 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 29 C 0.16 3.36 4.94 -3.71 -0.02 3.34 16 30 H 0.04 0.70 6.86 -51.92 -0.36 0.34 16 31 H 0.08 1.46 5.97 -51.93 -0.31 1.15 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.41 6.18 6.18 -40.82 -0.25 5.93 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.10 1.04 6.94 -51.93 -0.36 0.68 16 38 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 42 H 0.16 1.73 8.06 -52.49 -0.42 1.31 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.06 1.12 6.34 -51.93 -0.33 0.79 16 47 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.09 2.27 6.06 -51.93 -0.31 1.96 16 49 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 50 H 0.05 1.10 6.84 -51.93 -0.36 0.74 16 51 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 394.36 15.07 5.94 5.94 Total: -1.00 -31.35 394.36 -10.61 -41.96 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -8.17 Total: 6.76 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -3.25 Total: -4.27 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: -0.19 Total: -57.69 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.09 Total: -9.13 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.35 -10.61 -41.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278672361.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.419 kcal (2) G-P(sol) polarization free energy of solvation -31.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds