Wall clock time and date at job start Wed Apr 1 2020 02:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.49980 * 2 1 4 4 N 1.46496 * 109.46977 * 300.05979 * 3 2 1 5 5 C 1.34774 * 120.00267 * 179.97438 * 4 3 2 6 6 O 1.21291 * 119.99669 * 0.02562 * 5 4 3 7 7 C 1.50698 * 120.00443 * 179.97438 * 5 4 3 8 8 H 1.09006 * 110.25558 * 60.60607 * 7 5 4 9 9 C 1.54335 * 110.29722 * 182.75983 * 7 5 4 10 10 C 1.54195 * 102.46677 * 92.79856 * 9 7 5 11 11 C 1.51218 * 105.20742 * 25.95226 * 10 9 7 12 12 C 1.38743 * 130.69598 * 162.96701 * 11 10 9 13 13 C 1.38576 * 118.55978 * 180.32093 * 12 11 10 14 14 C 1.38225 * 118.99035 * 0.02562 * 13 12 11 15 15 N 1.31689 * 120.79901 * 359.97438 * 14 13 12 16 16 C 1.32294 * 122.03460 * 359.97438 * 15 14 13 17 17 C 1.53042 * 109.49552 * 120.05865 * 2 1 3 18 18 C 1.53046 * 109.53636 * 58.62079 * 17 2 1 19 19 C 1.53194 * 109.31391 * 61.36370 * 18 17 2 20 20 N 1.46930 * 108.77347 * 305.36434 * 19 18 17 21 21 C 1.36932 * 120.63163 * 233.60693 * 20 19 18 22 22 H 1.07998 * 119.99741 * 151.85491 * 21 20 19 23 23 C 1.38812 * 119.99913 * 331.84953 * 21 20 19 24 24 N 1.31618 * 120.00310 * 343.06718 * 23 21 20 25 25 Si 1.86804 * 119.99820 * 163.06290 * 23 21 20 26 26 H 1.48493 * 109.47338 * 90.00015 * 25 23 21 27 27 H 1.48501 * 109.47310 * 210.00766 * 25 23 21 28 28 H 1.48507 * 109.46845 * 330.00639 * 25 23 21 29 29 C 1.46932 * 118.73800 * 53.61180 * 20 19 18 30 30 H 1.09010 * 109.46622 * 60.00251 * 1 2 3 31 31 H 1.08993 * 109.47725 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47267 * 300.00726 * 1 2 3 33 33 H 1.09007 * 109.46899 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47201 * 60.06221 * 3 2 1 35 35 H 0.97006 * 119.99952 * 0.02562 * 4 3 2 36 36 H 1.09004 * 110.82544 * 210.81119 * 9 7 5 37 37 H 1.09007 * 110.82632 * 334.16619 * 9 7 5 38 38 H 1.09006 * 109.95537 * 267.17302 * 10 9 7 39 39 H 1.08998 * 110.58379 * 145.05954 * 10 9 7 40 40 H 1.08001 * 120.72049 * 0.30191 * 12 11 10 41 41 H 1.08002 * 120.50453 * 179.97438 * 13 12 11 42 42 H 1.08001 * 119.60191 * 179.97438 * 14 13 12 43 43 H 1.09000 * 109.46101 * 178.63631 * 17 2 1 44 44 H 1.08993 * 109.46614 * 298.61462 * 17 2 1 45 45 H 1.09001 * 109.50052 * 181.31926 * 18 17 2 46 46 H 1.09002 * 109.49450 * 301.37960 * 18 17 2 47 47 H 1.09000 * 109.58737 * 65.15250 * 19 18 17 48 48 H 1.08998 * 109.58756 * 185.43853 * 19 18 17 49 49 H 0.97000 * 119.99670 * 179.97438 * 24 23 21 50 50 H 1.08998 * 109.58762 * 186.60233 * 29 20 19 51 51 H 1.09003 * 109.58839 * 66.17300 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4423 0.0000 4 7 1.5515 2.1335 -1.1954 5 6 1.8771 3.4238 -1.4084 6 8 2.5755 4.0127 -0.6105 7 6 1.3744 4.1348 -2.6384 8 1 0.2845 4.1517 -2.6455 9 6 1.9345 5.5719 -2.6926 10 6 3.2112 5.3998 -3.5399 11 6 2.9550 4.1832 -4.4007 12 6 3.5903 3.7393 -5.5516 13 6 3.1380 2.5744 -6.1505 14 6 2.0740 1.8988 -5.5831 15 7 1.4949 2.3497 -4.4897 16 6 1.8976 3.4567 -3.8877 17 6 2.0407 -0.7226 1.2487 18 6 1.5035 -2.1556 1.2664 19 6 2.0152 -2.9038 0.0314 20 7 1.6527 -2.1383 -1.1692 21 6 0.9653 -2.7319 -2.1940 22 1 0.3214 -2.1392 -2.8268 23 6 1.0962 -4.0953 -2.4194 24 7 2.1045 -4.7560 -1.8910 25 14 -0.1588 -4.9925 -3.4728 26 1 0.2779 -4.9679 -4.8919 27 1 -0.2739 -6.4003 -3.0145 28 1 -1.4783 -4.3223 -3.3493 29 6 2.0420 -0.7237 -1.2493 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 3.1308 1.4417 -0.0005 34 1 1.6785 1.9559 0.8905 35 1 0.9926 1.6626 -1.8334 36 1 1.2328 6.2428 -3.1882 37 1 2.1724 5.9331 -1.6920 38 1 4.0692 5.2292 -2.8894 39 1 3.3777 6.2773 -4.1646 40 1 4.4191 4.2898 -5.9716 41 1 3.6092 2.2005 -7.0476 42 1 1.7132 0.9901 -6.0420 43 1 3.1304 -0.7435 1.2359 44 1 1.6980 -0.1956 2.1390 45 1 1.8485 -2.6624 2.1677 46 1 0.4138 -2.1357 1.2547 47 1 3.0992 -3.0036 0.0877 48 1 1.5590 -3.8928 -0.0117 49 1 2.1957 -5.7088 -2.0483 50 1 1.6015 -0.2734 -2.1388 51 1 3.1281 -0.6457 -1.2974 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278672361.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:24 Heat of formation + Delta-G solvation = -7.178580 kcal Electronic energy + Delta-G solvation = -31342.033832 eV Core-core repulsion = 27433.331817 eV Total energy + Delta-G solvation = -3908.702015 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.11685 -40.76426 -39.77903 -37.04240 -36.33608 -34.81710 -33.67931 -32.48509 -32.24524 -30.34058 -29.45874 -27.96977 -27.27561 -26.70104 -24.48025 -23.97316 -23.40527 -22.55353 -21.99920 -20.99666 -19.47910 -18.71071 -18.41985 -17.77656 -17.10018 -16.96197 -16.80560 -16.45966 -15.92449 -15.86138 -15.52709 -15.34661 -15.18280 -14.81679 -14.57298 -14.47157 -14.31546 -14.22004 -13.85524 -13.78696 -13.59167 -13.21516 -12.98374 -12.96501 -12.73809 -12.69186 -12.58463 -12.29998 -12.21360 -12.16184 -12.04358 -11.96400 -11.78325 -11.47401 -11.33138 -11.05886 -11.00385 -10.65953 -10.50180 -10.29405 -10.06909 -9.68165 -8.64380 -7.84910 -5.29961 0.07420 0.32080 1.46247 1.48245 1.52114 1.57683 2.19058 2.52108 2.79921 2.97396 3.29984 3.37223 3.55857 3.74408 3.82687 3.88426 3.93604 3.95607 3.97966 4.07351 4.17322 4.30598 4.38785 4.44077 4.46664 4.57907 4.62912 4.63293 4.67923 4.73108 4.80730 4.83325 4.91052 4.95619 4.99327 5.08677 5.09988 5.11508 5.15941 5.18965 5.23226 5.29968 5.33330 5.36845 5.47233 5.50713 5.61885 5.68794 5.75044 5.80136 6.40399 6.48716 6.99738 7.15231 7.17099 7.87708 8.40607 9.21311 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011075 B = 0.003774 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.671112 B = 7416.593365 C = 9234.670503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.079 4.079 3 C 0.141 3.859 4 N -0.715 5.715 5 C 0.524 3.476 6 O -0.569 6.569 7 C -0.060 4.060 8 H 0.128 0.872 9 C -0.098 4.098 10 C -0.075 4.075 11 C -0.149 4.149 12 C -0.071 4.071 13 C -0.163 4.163 14 C 0.084 3.916 15 N -0.498 5.498 16 C 0.095 3.905 17 C -0.092 4.092 18 C -0.131 4.131 19 C 0.176 3.824 20 N -0.600 5.600 21 C -0.253 4.253 22 H 0.064 0.936 23 C -0.049 4.049 24 N -0.936 5.936 25 Si 0.962 3.038 26 H -0.286 1.286 27 H -0.294 1.294 28 H -0.270 1.270 29 C 0.166 3.834 30 H 0.046 0.954 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.050 0.950 34 H 0.078 0.922 35 H 0.408 0.592 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.108 0.892 40 H 0.162 0.838 41 H 0.166 0.834 42 H 0.166 0.834 43 H 0.050 0.950 44 H 0.081 0.919 45 H 0.068 0.932 46 H 0.061 0.939 47 H -0.012 1.012 48 H 0.053 0.947 49 H 0.248 0.752 50 H 0.046 0.954 51 H -0.007 1.007 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.485 20.933 -3.371 21.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.081 4.081 3 C 0.017 3.983 4 N -0.366 5.366 5 C 0.310 3.690 6 O -0.449 6.449 7 C -0.081 4.081 8 H 0.145 0.855 9 C -0.136 4.136 10 C -0.112 4.112 11 C -0.151 4.151 12 C -0.096 4.096 13 C -0.182 4.182 14 C -0.073 4.073 15 N -0.207 5.207 16 C -0.042 4.042 17 C -0.130 4.130 18 C -0.170 4.170 19 C 0.050 3.950 20 N -0.322 5.322 21 C -0.383 4.383 22 H 0.082 0.918 23 C -0.244 4.244 24 N -0.582 5.582 25 Si 0.791 3.209 26 H -0.213 1.213 27 H -0.221 1.221 28 H -0.195 1.195 29 C 0.040 3.960 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.245 0.755 36 H 0.126 0.874 37 H 0.113 0.887 38 H 0.094 0.906 39 H 0.127 0.873 40 H 0.180 0.820 41 H 0.183 0.817 42 H 0.183 0.817 43 H 0.069 0.931 44 H 0.100 0.900 45 H 0.086 0.914 46 H 0.080 0.920 47 H 0.006 0.994 48 H 0.071 0.929 49 H 0.057 0.943 50 H 0.065 0.935 51 H 0.011 0.989 Dipole moment (debyes) X Y Z Total from point charges -0.667 20.683 -2.475 20.841 hybrid contribution 0.228 -1.257 -1.370 1.873 sum -0.439 19.426 -3.845 19.808 Atomic orbital electron populations 1.21669 0.93280 1.01860 1.01093 1.21137 0.97145 0.92676 0.97122 1.21295 0.98047 0.91208 0.87719 1.46137 1.52896 1.11867 1.25664 1.20550 0.79651 0.81831 0.86987 1.90646 1.39221 1.66769 1.48258 1.20858 1.03575 0.96105 0.87603 0.85451 1.22270 0.96900 0.92048 1.02358 1.20980 0.98796 0.95041 0.96430 1.21809 0.96873 0.99548 0.96898 1.21465 0.99073 0.95739 0.93337 1.22444 0.97703 0.95811 1.02265 1.22999 0.93606 0.99562 0.91177 1.66752 1.31034 1.13053 1.09858 1.21526 0.95128 0.91795 0.95785 1.21357 0.99648 0.95404 0.96576 1.22054 1.00815 0.96115 0.98044 1.20603 0.94661 0.94970 0.84762 1.44180 1.65149 1.06480 1.16418 1.19425 1.18172 0.91987 1.08740 0.91783 1.25731 0.98802 0.98903 1.00963 1.70197 1.30146 1.08056 1.49845 0.85356 0.79674 0.77538 0.78382 1.21261 1.22061 1.19472 1.20878 0.94519 0.85036 0.95544 0.93466 0.92949 0.91524 0.93137 0.90382 0.75484 0.87439 0.88736 0.90637 0.87328 0.82008 0.81680 0.81670 0.93095 0.90017 0.91388 0.92027 0.99390 0.92863 0.94274 0.93521 0.98895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.81 7.81 71.98 0.56 -3.25 16 2 C -0.08 -2.60 0.53 -52.10 -0.03 -2.63 16 3 C 0.14 4.25 4.57 86.38 0.39 4.65 16 4 N -0.71 -20.88 4.92 -463.06 -2.28 -23.16 16 5 C 0.52 14.86 7.17 87.66 0.63 15.49 16 6 O -0.57 -18.77 15.45 -3.06 -0.05 -18.82 16 7 C -0.06 -1.33 3.27 -11.59 -0.04 -1.37 16 8 H 0.13 2.43 8.14 -2.38 -0.02 2.41 16 9 C -0.10 -1.65 6.39 31.45 0.20 -1.45 16 10 C -0.08 -1.26 6.75 30.42 0.21 -1.06 16 11 C -0.15 -3.17 6.16 -19.59 -0.12 -3.29 16 12 C -0.07 -1.28 10.17 22.47 0.23 -1.05 16 13 C -0.16 -3.10 10.12 22.35 0.23 -2.87 16 14 C 0.08 2.05 11.18 84.71 0.95 3.00 16 15 N -0.50 -14.06 10.35 -182.98 -1.89 -15.95 16 16 C 0.10 2.40 6.52 42.72 0.28 2.67 16 17 C -0.09 -2.94 4.71 30.62 0.14 -2.80 16 18 C -0.13 -4.85 5.74 30.67 0.18 -4.67 16 19 C 0.18 8.55 5.30 86.36 0.46 9.00 16 20 N -0.60 -30.00 2.43 -699.08 -1.70 -31.70 16 21 C -0.25 -13.84 9.58 84.03 0.81 -13.04 16 22 H 0.06 3.44 7.88 -2.91 -0.02 3.42 16 23 C -0.05 -2.73 4.92 84.86 0.42 -2.31 16 24 N -0.94 -55.74 11.19 21.65 0.24 -55.50 16 25 Si 0.96 44.91 29.59 68.60 2.03 46.94 16 26 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 27 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 28 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 29 C 0.17 7.05 4.94 86.36 0.43 7.48 16 30 H 0.05 1.43 6.86 -2.38 -0.02 1.42 16 31 H 0.05 1.92 5.97 -2.39 -0.01 1.91 16 32 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 34 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.41 12.24 6.18 -92.70 -0.57 11.67 16 36 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.09 1.77 6.94 -2.38 -0.02 1.75 16 38 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 39 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.16 1.87 8.06 -2.91 -0.02 1.84 16 41 H 0.17 2.10 8.06 -2.91 -0.02 2.08 16 42 H 0.17 3.64 8.06 -2.91 -0.02 3.61 16 43 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 46 H 0.06 2.27 6.34 -2.39 -0.02 2.25 16 47 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 48 H 0.05 2.93 6.06 -2.39 -0.01 2.91 16 49 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 50 H 0.05 2.00 6.84 -2.39 -0.02 1.99 16 51 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 Total: -1.00 -70.03 394.36 2.62 -67.41 By element: Atomic # 1 Polarization: 27.93 SS G_CDS: 0.36 Total: 28.29 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: 5.91 Total: 2.50 kcal Atomic # 7 Polarization: -120.68 SS G_CDS: -5.63 Total: -126.32 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.05 Total: -18.82 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -70.03 2.62 -67.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278672361.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.231 kcal (2) G-P(sol) polarization free energy of solvation -70.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds